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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0338000 |
| Transcript ID | LotjaGi5g1v0338000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cysteine--tRNA ligase; TAIR: AT5G38830.1 Cysteinyl-tRNA synthetase, class Ia family protein; Swiss-Prot: sp|B3LFA4|SYCC2_ARATH Cysteine--tRNA ligase 2, cytoplasmic; TrEMBL-Plants: tr|A0A151U7E6|A0A151U7E6_CAJCA Cysteinyl-tRNA synthetase; Found in the gene: LotjaGi5g1v0338000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:65521766..65529256) extracted from Lotus japonicus Gifu genome v1.2.
CTCGCAATCCAGGTTAATAAGCGTTGAACAAAACGCGTAACCAAACACGGCATATAAATATTAGTTTGTAACAAGTACTT ACATCGTGTAACAACAGAGACAGAGCGAGAGACAGGGTACAAGGAAGAGCGGTTACAAAAGGTGCGGCGGCGGCGGCACC AAATCGAAGTGAATTAGGGCGAACCGAACCGACGGTGGGTGGTGGCAATGGCGGCGGAGGAGCAGATTGAGTTCAGGGTT TACAATTCCATGACTCATGAGAAGGAGATCTTCAAGCCCAAAGTCCCCGGCAAGGTTTCCATGTACGTTTGTGGTGTCAC TGCCTACGATTTCAGCCATCTCGGTCACGCTCGTGCCGCCGTTTCTTTTGATATCCTCTTCAGGTACTGTTATTCATTCT CATTCATCCAATCTCAATTGTTTTTTGTTTTATTTGATTCTCTCTCGATTTGTGATTGGTTGTTCTGGAATGAGTGTGGT TTGTTTAATGTGAGTTGATAGGTTTCTGTTGTTCATTGCTGGGTCTGCTTGCTTCTGATTGAAGATTTTTTCACTTGTGT GTGTCTTTTTATGCTAATCCATCCATGTTATATGATATCTCACTTTTTCATTGACAATGGTTAATCATAATGGCAAAACT CAGTGTCTTGCAGAGGCTATTTACAGTTACACTTCCTGATATATGTACAATTGAACTTCTTTTTCGCCACTGAGTAATTT GGTAGTGAGTATGTTGCTTTGCATGAAACAGTATGAGCTATAGCTTCAGATGCCACTAGTTCTACATTAAAATTTGAATT TATGAACTAGGCTCAGTTCATTCTTTGTTATGAACTAGTGGGGTATATGATTATATATAATGGGTCATGATTATATATAA TGTGCCACGTGCCAATTGATTCGATTTCGAAAATGTTTGCCTTTCTTTTCTGCTGTTGTCCTTGATGGGGTTTAGTCCTG CTAGTATTATTTAGGTTTGTGATCTTAATTTTATATATTAGTTTATCGGAGAGTAGTTAAAACGTGAGAGTCGGCTCACC TTTTTTTCTTTTTTTTCTTTTCTGTTCACTATTTTCTTCTTTAGATTTTCTGATTTTAGATGTGATGATAGAGAGTTAAC ATGGTGTTTTTACTCTGCATGGCATGAAAACTTGCAGGTACCTTAAACACTTGGGCTATGAGGTGACATATGTACGCAAT TTCACTGATGTTGATGACAAGGTAAGGAGGATAAATACATCATCTAAATTTATGTTTGTTACTTGTGAATGATGTAAGCG TACAATATCCAGTGTTGTCAAATAGCGGATATTGCGGCACTTTAGTGCTATAGCTGAGGGCTCACCGCTATCCACTATTT GCCGCTATTTTTCGCTCGGCTGGCTTGACATAGTGGATTTTTGGCTTTCCGCTATTTTCCGCAATATGCGATTAACAAAA CTGGCAATATCAAGTTATAAGGATTCATATTAACAGCATGATAATGATTGTGTGATGATTCTGTGTTAGTGAATCCAAAC AGATCATATGTATTAATGGTGTCTTTAAATTGAGTAATAGGTCTATGGAAATGGCTACATGAGTTGAATGCTTCAAATAT CTGTTTGATCATATTATGACAGTCCATATTTATAATAAAGAGTGTATATTCCCCATTATGAATAGTGCTGCCCATGGTTT ATGAATATATTTTCCATTATGTGTATATTCTGAAGAATAAGTCATAATATTCATTTTCATCGTCACATTTGTATGTAGTA AAAAATTGCAGTGGATGTGCCATGTTTTAATTGAATTAAGTGCAATCTTCTGAGACTACATAAAAATTTCTCATTTTATC CCCTATTAGAGAACATGAGTAAATAGTACTAACTGCAATGAAGTTCTGTAAGCCATTCAGTATGGTAATGTATGTGCTTA TGATTTGAAATGTGTGACAGGCATCATCCGTTATGGTAATTGTTCAAATGTAGTCTTTAAGTTGGTAGTTTCTTTTCCTT CTTGAACTGTCTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTACTGCTGCT GTTGTTGCTGCTGCAGTTATTGTTGTTGCTGTTATTTCCTCACTTGACATGAAGTTTTGTCCTTTTGATTCAAATGATGA GGCTATTTTTAGCAATGCTGGTGTTCCTGCTTGATACACAATAACTCTTACTTATTGTCAGAAGTTTCATCAAGTTCATT TGTTCTTGAAAATACAGACCTTAAATTTTAATTATTTTACATGAGTCTCGTATCTGGTTCTTTAATGCTTATTATAGACT GCTAATATCAGCATTGCTGCAGATTATTAAGCGAGCAAATGAGACCGGGGAGGATCCTTTGATGCTAAGCAAGCGTTTTT GCAATGAATATGATGTTGATATGTCTGGTCTTCAGTGTGAGAGACCATCTACGGAGCCTTGTGTTTCAGATCACATTGAG AAGATAATCGAGATGATACAGCAGGTTTTAATTTTCCATTAAGATTGCTCTCTTTTGCTTTGTTTGAACTTTTTCATGGA ATCTGCTGAAATGAAATATATTCCTTTTTGCATCACTTTTATTCCAATGGAATTCCAATACTTTGATGGTTTTGCATGCT GTTTAATATTAGTCACATCACTTATTTTTTCACAAGTACATTTGGAATTCATGTATTGCCTGAAACCTGTGACATTTAAG ATGATCTGTATACTCTTTGCTATGCTGTATGCTTCTAATTAAAAGTTTATAGTACTCACTCACTGCTGATTGTTGAATGG ATTTAGATATTACAAAAAAACTTTGTTTCGAATTAAAGAATAAGGTTTTCCTTCTCAATCTTCCAGCAAGTGCTATTATT GTACTTTCTCTCTTTAAATTGTGAAAAAAATGATTCAAATTGAGCAGGAATGGAAAGAAAAATCAAAATGGAAACAGGCT TGATTTTAAGTTGTCATAGTTAGAGATGAAGCTACTTGCAATCTCCAGATGTAACATCAATGAGGTTGCGGGTGGTGATA ATTGATAAACTTAACTTTCTGAGGCATGTTTTGTTGTGGCATGTTTTACTCAGTTCTAAGGCATTAATTAAAAATTCTAA AGAACATTAGTCTTTCATGTACCATGTAGATTATCAAAAACGGCTATGCATATGAAGTTGATGGTGATGTTTTCTATTCT GTCACTGAATTCCCAAGTTATGGCATGTTGTCTGGACAAAGGCTAGACCATAATAGAGCGGGAGAACGAGTTGCTGTCGA CACCAGAAAGCGTCATCCTGCTGATTTTGCATTGTGGAAGGTTTGCAGATTTGACCAGTTATTTTGACATGTTTTGGGTT ATGTTTTCAAATCCCGCTGATTTCTTAACAATAATTGCAGAAGGCTAAGCCGGATGAGCCTCGGTGGCCCAGCCCTTGGG GTGATGGAAGGCCTGGGTGGCACATTGAATGCAGTGCAATGAGTGCTTGTTATTTAACTCATAACTTTGATATTCATGGT GGTGGGATTGATTTAATATTTCCTCATCATGAAAATGAGATTGCACAGAGCTGGGCTGCAAACAAAGAGAGCAATGTCAG CTATTGGATGCACAATGGGCATGTCACTAACAACAATGAGAAGATGTCAAAATCCTTGGGCAATTTTTTCACCATTCGTC AGGTTAGCCCTTGGGCAACTTTTTCACCACACTCCCGTCTAATGATAGCTTTTTATTCCGTTTTGGATATTTCTTAACTA GATCATATGATTTTGTTTCTCTTTTGGAAATCTTTCCTCACTTAGTGGGATAAGGCTTTTGTTGTTGTTGTTTGCAGATT ACAGAGCGTTATCATCCACTTGCTTTGAGACATTTTTTGATTACTGCCCATTACAGATCTCCGCTTAATTACTCAATCTC ACAGCTGGAGACTTCATCTGATGCTATTTATTATATATTTCAGGTAAGCAGCTTCTAAGTAATCTGTATCGAAAATTCTG TGTCATTGCTTTAATATTGACAGGCAAGTTCACCTCTCATGTTTGAAACAGTTTCATCATTATGTAATCTAAAATTTGGG GAAGGGAACTGCTAGAGAATTTAGTTAGATAAAATATTAATTAGGAATAAATAGAGATGTAAGTTAGTTAGTAGATAGAG GGGACATCAATTAGATGAAAAAAAGGTGAATGAGAGAAAATAGGAGACGTAGAAAATTAGATATTTTTTGAAAGAGGTAT CTTGAAGGACATTCCTTTCACTAATAATAAATTTGTTCTTGTTCTCTTCTCTCATATTCTTCAACTCTTTATGGTGGTTT TGTATCAATTTGGTCTGGTATCATCAGCTGATGACAGCCATGAACTCAAGATTTGAAGTTTCGGAAGGACAGTTTCAGAA ACACAGTTCTAACTCTCAGAAATCAAGAACAATGTAGCCACTATAGATGTCAAATAACTTTTTTCACAGTAGCTGCAGAA GCTAAGCATATATTTGGACGAAAATGATGATGAGGAGCAACTAGTAAGTGAAAGTAGTAGCATGAACAACAGAAATTAAG ATTTTCAATTTTGGGCGAGGAAGGTAAAACTGCCCATTTTAAAGGACAAAATCCTCCAGGTGGTTCGTGAGAGCTGAAGT TTCTTTTGACGTGCCGCCTGGTATTCAGTGGAGAAGGTCCATATGACTTTCATCTGCATGGAGGGAAGGGCGGTGCATTG GTTCAGGTACTTGTGCTAGAAGATGCCCAAATTGATATGGGAAGGGCTTACTTCAGTTCTCACCCAATGTTCACGAGAGA CTGACCCTAATCTAACAGGCTCTTTTGAGGAATGCATACAAGAGTTTTTAGTCATTGGTAGCCCAGGCTTCAAACAACTC TTGTAGGTGCTCAGGGGTGACAAGATGTGCAATGTAAATTCTAACCCATATATCCTCAGGATGTGTTTAGGGCGATGATC CTACTTCGGATAGTGGAGGAGAAGCTGTAAATAGTATGGGGCAAGGGTAAAGATGAAAAGTCACAACTGTACATGGGATG GGGATAACAATCTCAACCCACAGAGGCTGGATTCATTAACACAGAGGACATATCATCATGGAAGCACATTAGGCCAACCC ATTATTTAGACAAGGGCTTGCAAGGGGAGAAGAGAGCTGCAAGCCTGCAACTCAATTAGCGTCAGCGCTGCGATCACCTT CCCACTAAGAAATGGAGGAGCTTGACAATTCAATTCGTTGTGGTACCGTGGTTAAATGTTCAGGAAAAAGTATGAGGGTG ATGATTTTAGCAGAAGATGAACAAGAGACTCAGGATGGGGACGAAGTCTAGACTTTAGGGGCAGAAACATGGTAGGGAAA TGAACAGCGGGACCTCTCATACAATGGAAATCCCCAATTTCCACATTGAGGACACGGTGGACTTTTAAGGGTGGTGGTAT TGTGATGATCGTAGCAAGGGGAATAGTTAGAGAATTCTCGTAGGTGTGATATTAGATACAAGTAGATAGAAATAATTAGT TGGTTAGATGGGATATTGGTTTGATCAATAGGGAGAATAAGGAGAGAAAAACGGAGATTTTGAAAATTAGTTAGTTTACA TGCTCTAGAGGAGAATTCTCTCCTTGTATGCTCCGGTTCCATCAACTAATAATAGATTTATTCTTGTTCTTCTATCTTTC ATCCTATGCTTCATCTCTTAATTGTGGGCACCTATCAGTGTCTTTATAAATGTCACCATTTTTTGTGTATTCGGCTTTGA AACTCCATATCCTATACCACTACGATTTAAAGTAAGCAACGAAAAATGTTTCCCTCTTTGTATGTCTCTGTGTTAAACTA TATCACATGTTCGAATTCTTTGATGATTCAGTCATAAGACTGGTAATTTATTGTTCTCTATGGTATGCATGTTATAGCAT GTAATTAAGACAAGGTAAAAGCTATAATAACCGAAAACAGAGTTTTGTTTATTGAAGTTCAGTGGTTTATGGTTCCAAGA ATAAATTTTCTACTCTGCGACAACCTAGCTGTGATTAGTATCTATTTTCAAATACCTATGGCCAATAATGAACGGCTTAA TTGATGCAATTACAAATGAAGTTGTTCAACGCAACTTTTTTCTTTCGGAACATCCTTTAATATTAGAAGGAATTTGTTCT TTTGGTTGTCAGACTCTTCAAGATTGTAAAGATGCTTTATCACCATTGCTACAAGTGGACACTGAAAGGAGTGAAAATTT GCCTCAAATTAATGAGGCTGCCAAGGACTGCATCAAGAAGTTGAGTGTTGAGTTTCAAACAAAAATGTCAGATGACTTGC AGACACCAGTAATACTTAATGGTGCTCTCCTAGAGGCCTTGAAATATGTGAACAGTTCTTTGAAGTTGCTGAAGGTATGT ATTTATTTGGAACTAGTTTCGTGTATTCAATGCCTGGATTCAACATGTTTTTTTTTCCTGAACCTGAAATGCATCATTAA TTAATGAAATAATGTTTTATGTTTATACCAGAAAAAGATGCAGAAACGGGCACAGTTGCAATTAGTTCAATCCCTATTGG AAACTGAGAAAGAAGTTAGAAAAGTTTTGGATGTACTAGGATTATTGTCCTCTCAATCCTATGATGAGGTGACGCCTTTT ATTAAAATGAGCTTACTAATCTTTAAGAGATAACTATTCTTTTGAAAGCCATGTTGAAATGAATTTTTTTGTTATTTGTT CATCAGGTTCTGCAGCAGTTGAAAGGTAAGGCACTGACGAGAGCAGATCTGGAAGAAGTTGATGTGCTACATCTGATAGA AGAAAGAACTCAAGCTAGGAAAGATAAGGATTTCCCCAAAAGTGATAAGATTAGGACTGATTTAGCAGCGAAGGGCATTG CACTGATGGATGTAGGTAATGAAACTATTTGGAGACCATGCATACCAAGTTAAGCACTTATTGCCGAAGTTGTTCAGACA GACATCAACATACATCATCATGAATGTGGTATCAATGTCCCAGCATAGGTGTGATTAATACAGAACTGTGTTATGATTTA TTAATACTAGAACACGAGGCTTGAACAGTGTAAAATATCAATTCAAGGTTTTGACTAAGTTCCCTGAGTCCATTTATGGT CCTGACACTGATAGTTTAGCTGGCTATGACAATTACTAAGTTTAGCCTCGTGCTGAGATTGAGATTTTTTAAAATTATTG AAACTCTTGTTTTTTACTAAAGAAAGTTCAAATATTATTGTAGAATAGAGTCCGATTGCTCTTACGTGGTTCACTTTGAT GTGGATGTTCCTAGCTTGTCTTATGTTTGCGTAAAGGAAAACACATCCCAACACATCGATTGAGAAGTAGATTTTTGCCA CGTTAAAGTAAAATATTGATTGATATTCAGTTCAATCGAAAACCATACACTCATTATTCTAAACAATTATCTCATGTAAC GTAAGACTGCCCACATGATTACCATGTAGCTTTTGGTATTAGCTGAGAATG
CDS sequence (LotjaGi5g1v0338000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCGGAGGAGCAGATTGAGTTCAGGGTTTACAATTCCATGACTCATGAGAAGGAGATCTTCAAGCCCAAAGTCCC CGGCAAGGTTTCCATGTACGTTTGTGGTGTCACTGCCTACGATTTCAGCCATCTCGGTCACGCTCGTGCCGCCGTTTCTT TTGATATCCTCTTCAGGTACCTTAAACACTTGGGCTATGAGGTGACATATGTACGCAATTTCACTGATGTTGATGACAAG ATTATTAAGCGAGCAAATGAGACCGGGGAGGATCCTTTGATGCTAAGCAAGCGTTTTTGCAATGAATATGATGTTGATAT GTCTGGTCTTCAGTGTGAGAGACCATCTACGGAGCCTTGTGTTTCAGATCACATTGAGAAGATAATCGAGATGATACAGC AGATTATCAAAAACGGCTATGCATATGAAGTTGATGGTGATGTTTTCTATTCTGTCACTGAATTCCCAAGTTATGGCATG TTGTCTGGACAAAGGCTAGACCATAATAGAGCGGGAGAACGAGTTGCTGTCGACACCAGAAAGCGTCATCCTGCTGATTT TGCATTGTGGAAGAAGGCTAAGCCGGATGAGCCTCGGTGGCCCAGCCCTTGGGGTGATGGAAGGCCTGGGTGGCACATTG AATGCAGTGCAATGAGTGCTTGTTATTTAACTCATAACTTTGATATTCATGGTGGTGGGATTGATTTAATATTTCCTCAT CATGAAAATGAGATTGCACAGAGCTGGGCTGCAAACAAAGAGAGCAATGTCAGCTATTGGATGCACAATGGGCATGTCAC TAACAACAATGAGAAGATGTCAAAATCCTTGGGCAATTTTTTCACCATTCGTCAGATTACAGAGCGTTATCATCCACTTG CTTTGAGACATTTTTTGATTACTGCCCATTACAGATCTCCGCTTAATTACTCAATCTCACAGCTGGAGACTTCATCTGAT GCTATTTATTATATATTTCAGACTCTTCAAGATTGTAAAGATGCTTTATCACCATTGCTACAAGTGGACACTGAAAGGAG TGAAAATTTGCCTCAAATTAATGAGGCTGCCAAGGACTGCATCAAGAAGTTGAGTGTTGAGTTTCAAACAAAAATGTCAG ATGACTTGCAGACACCAGTAATACTTAATGGTGCTCTCCTAGAGGCCTTGAAATATGTGAACAGTTCTTTGAAGTTGCTG AAGAAAAAGATGCAGAAACGGGCACAGTTGCAATTAGTTCAATCCCTATTGGAAACTGAGAAAGAAGTTAGAAAAGTTTT GGATGTACTAGGATTATTGTCCTCTCAATCCTATGATGAGGTTCTGCAGCAGTTGAAAGGTAAGGCACTGACGAGAGCAG ATCTGGAAGAAGTTGATGTGCTACATCTGATAGAAGAAAGAACTCAAGCTAGGAAAGATAAGGATTTCCCCAAAAGTGAT AAGATTAGGACTGATTTAGCAGCGAAGGGCATTGCACTGATGGATGTAGGTAATGAAACTATTTGGAGACCATGCATACC AAGTTAA
Protein sequence (LotjaGi5g1v0338000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAEEQIEFRVYNSMTHEKEIFKPKVPGKVSMYVCGVTAYDFSHLGHARAAVSFDILFRYLKHLGYEVTYVRNFTDVDDK IIKRANETGEDPLMLSKRFCNEYDVDMSGLQCERPSTEPCVSDHIEKIIEMIQQIIKNGYAYEVDGDVFYSVTEFPSYGM LSGQRLDHNRAGERVAVDTRKRHPADFALWKKAKPDEPRWPSPWGDGRPGWHIECSAMSACYLTHNFDIHGGGIDLIFPH HENEIAQSWAANKESNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLITAHYRSPLNYSISQLETSSD AIYYIFQTLQDCKDALSPLLQVDTERSENLPQINEAAKDCIKKLSVEFQTKMSDDLQTPVILNGALLEALKYVNSSLKLL KKKMQKRAQLQLVQSLLETEKEVRKVLDVLGLLSSQSYDEVLQQLKGKALTRADLEEVDVLHLIEERTQARKDKDFPKSD KIRTDLAAKGIALMDVGNETIWRPCIPS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 311 | 311 | 6.9E-132 | ||
| PANTHER | 6 | 507 | 502 | 1.5E-254 | – | |
| PANTHER | 6 | 507 | 502 | 1.5E-254 | ||
| SUPERFAMILY | 8 | 317 | 310 | 8.85E-94 | – | |
| Hamap | 9 | 504 | 496 | 34.843 | ||
| CDD | 10 | 311 | 302 | 2.10082E-108 | ||
| TIGRFAM | 10 | 503 | 494 | 1.3E-155 | ||
| Pfam | 22 | 318 | 297 | 7.9E-125 | ||
| PRINTS | 32 | 43 | 12 | 1.3E-29 | ||
| PRINTS | 68 | 77 | 10 | 1.3E-29 | ||
| PRINTS | 197 | 215 | 19 | 1.3E-29 | ||
| PRINTS | 228 | 249 | 22 | 1.3E-29 | ||
| Gene3D | 327 | 504 | 178 | 9.5E-23 | – | |
| SUPERFAMILY | 357 | 504 | 148 | 5.75E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Cysteine-tRNA ligase activity | Catalysis of the reaction: ATP + L-cysteine + tRNA(Cys) = AMP + diphosphate + L-cysteinyl-tRNA(Cys). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Cysteinyl-tRNA aminoacylation | The process of coupling cysteine to cysteinyl-tRNA, catalyzed by cysteinyl-tRNA synthetase. A cysteinyl-tRNA synthetase is a class-I synthetase. The activated amino acid is transferred to the 2'-OH group of a cysteine-accetping tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification. |
Expression pattern of LotjaGi5g1v0338000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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