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LotjaGi5g1v0339400.1

Overview

Field	Value
Gene ID	LotjaGi5g1v0339400
Transcript ID	LotjaGi5g1v0339400.1
Lotus japonicus genome version	Gifu v1.2
Description	tRNA dimethylallyltransferase; TAIR: AT1G68460.1 isopentenyltransferase 1; Swiss-Prot: sp\|Q5GHF7\|IPT_HUMLU Adenylate isopentenyltransferase; TrEMBL-Plants: tr\|Q1W5W5\|Q1W5W5_LOTJA Adenylate isopentenyltransferase; Found in the gene: LotjaGi5g1v0339400
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr5:65642538..65644514) extracted from Lotus japonicus Gifu genome v1.2.

AGAGAAAAGAAACACAGCAGTGATGATGATGATGAGAGGAATGCAATATTGCAGAGCAGAGGCAGAGAGGAATGAGATCT AAGCCTACCTATAAAGTAACCAAAGCCACCCTCATTCATTAAGGCAATAACAAAAGCTTCCCCCTCTTCAAAACTTCAAT GCAATGCACAATGCAAATGCAATCCCTTTCCTCCCTCCCATTTCCAATACAACATCAACAACAACAGCAATAGCAATAGC TATTTAACCTCTCTAGCTAGCTATTGCAATCACAAACCAGAATGAATTGAATTTGGCTAGCTGGCATACACAACATTGAG ATGCCATTTTCCCAACAACAGAAACAGAACAGACAGAGTGAGAGTTCCATTCCCATTCCCACTTTCACAATTCCCTTCCA TAACCATTGATTCATTCAGAAAACAGAAAACAGAAAACAGAAAACCAAACCCACTCACTCTCTCTCACTCACTGCCAGCT CAGAAAGGTACACACACGCACACGCCATCTGTGTACCCAAACCCACGCACGCACTTTCTGCCTTTTCTTCAATTCCTCTG TCTCTCCCTCTTCCCTTCCCTTCCCTTCCCTTCCGTATATTGATTCCCTTTCACTCTCTTTCTTCTTCTTCCTATGAGAC TTTCCTCTCTCTCACCTCACCCCCACCACCACCACCACTACACCACACACTACCATTACCATTACCACCACCCCTCTTCA CTCGCCATGGACGGCCACCGCCGCAAAGACAAGGTGGTTGTCATCATGGGCGCCACCGGCTCCGGCAAATCCCGCCTCTC CATCGACCTCGCCACCCTCTTCCCCTTCTCAGAGATCATCAACTCCGATAAAATGCAAGTCTACAAAGGACTCGACACCA CCACCAACAAGATCCCACCTCACCAACGCAACAACGTCCCCCACCACCTCCTCGGCGACGTCGACCCTTCTCTCGGTGAT TTCACCCCCTCCGACTTCCGCCGCCGCGCCGGTGACCTCATCTCCGACATCACCCGCCGCAGAAAGCTCCCCATCCTCGT CGGCGGCTCCAACTCCTTCGTCCACGCCCTCCTTGTCGACCGATTCGACCCCGAGTCCAACGTCTTCCGCGACGATTCAC CCTCGCCGGTTTCCTCCGAGTTGAGATACCGGTGCTGCTTCCTCTGGATGGACATTGCGTTCCCCGTGCTGTCGGAGTAT TTGCTGAAGCGAGTCGACGACATGCTTGACTCGGGAATGGTGGACGAGTTGGCTCAGTTCTTCGACTCGGACACAGCGAA CCAGACCGGGTTGAGAAAAGCCATCGGTGTACCCGAGTTCGACCGGTTTTTCAAGGATCCGGTGCGGGAGGGTGCAGCGT ACGAGGAAGCGGTGAGGGCGATTAAGGAGAACACGTGTCAGCTAGCGAAGAGGCAGATTGGGAAGATCATGCGGTTAAAA AGAGCAGGGTGGGACCTACGGAGGATCGACGCCACGGAAGCGTTCCGGGTGGCGCTTGTGGCAGACGGCGGCGGAGAGAT ATTTTCCGATGAATGGAAGAGGCAAGTGTTGGAACCAAGCGTGAAGATTGTGAAGCGGTTCTTGATGGAGTAGGTTTGGG TTTTCCAGCTAAATCCAGCTATTCCACTTCCTCTTTAAATTTTTCTTTTTTTTTTCTTCTTCTCTTTTTTTGCGTTTATT TCACCCCCAAATAAGACAAAAAATGAAAGTGGGAAATTGGGGGGAAAATGTACAAAAATGGGAGTGGAAATTGTTAATTT GAATCCACTAGTTTGGTTGAGTGAGTGATTTCAGAGAGGGAATGAGCATGGATCATTAAATTTTTGGTCTTGGAGTTACT AGCAACTAGCAACTAGCAACAAGGCTTGGCTCATGTGAGATTCCACAATTTTTCTCAAGGCAATAGAAATGGATATTTAG TATATAAAATGTTGACGAAAGTTTTGGTAGCAATAGAGTTTAATTATTTTGAAGTTG

Download Genomic Sequence

CDS sequence (LotjaGi5g1v0339400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGACTTTCCTCTCTCTCACCTCACCCCCACCACCACCACCACTACACCACACACTACCATTACCATTACCACCACCC CTCTTCACTCGCCATGGACGGCCACCGCCGCAAAGACAAGGTGGTTGTCATCATGGGCGCCACCGGCTCCGGCAAATCCC GCCTCTCCATCGACCTCGCCACCCTCTTCCCCTTCTCAGAGATCATCAACTCCGATAAAATGCAAGTCTACAAAGGACTC GACACCACCACCAACAAGATCCCACCTCACCAACGCAACAACGTCCCCCACCACCTCCTCGGCGACGTCGACCCTTCTCT CGGTGATTTCACCCCCTCCGACTTCCGCCGCCGCGCCGGTGACCTCATCTCCGACATCACCCGCCGCAGAAAGCTCCCCA TCCTCGTCGGCGGCTCCAACTCCTTCGTCCACGCCCTCCTTGTCGACCGATTCGACCCCGAGTCCAACGTCTTCCGCGAC GATTCACCCTCGCCGGTTTCCTCCGAGTTGAGATACCGGTGCTGCTTCCTCTGGATGGACATTGCGTTCCCCGTGCTGTC GGAGTATTTGCTGAAGCGAGTCGACGACATGCTTGACTCGGGAATGGTGGACGAGTTGGCTCAGTTCTTCGACTCGGACA CAGCGAACCAGACCGGGTTGAGAAAAGCCATCGGTGTACCCGAGTTCGACCGGTTTTTCAAGGATCCGGTGCGGGAGGGT GCAGCGTACGAGGAAGCGGTGAGGGCGATTAAGGAGAACACGTGTCAGCTAGCGAAGAGGCAGATTGGGAAGATCATGCG GTTAAAAAGAGCAGGGTGGGACCTACGGAGGATCGACGCCACGGAAGCGTTCCGGGTGGCGCTTGTGGCAGACGGCGGCG GAGAGATATTTTCCGATGAATGGAAGAGGCAAGTGTTGGAACCAAGCGTGAAGATTGTGAAGCGGTTCTTGATGGAGTAG

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Protein sequence (LotjaGi5g1v0339400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRLSSLSPHPHHHHHYTTHYHYHYHHPSSLAMDGHRRKDKVVVIMGATGSGKSRLSIDLATLFPFSEIINSDKMQVYKGL DTTTNKIPPHQRNNVPHHLLGDVDPSLGDFTPSDFRRRAGDLISDITRRRKLPILVGGSNSFVHALLVDRFDPESNVFRD DSPSPVSSELRYRCCFLWMDIAFPVLSEYLLKRVDDMLDSGMVDELAQFFDSDTANQTGLRKAIGVPEFDRFFKDPVREG AAYEEAVRAIKENTCQLAKRQIGKIMRLKRAGWDLRRIDATEAFRVALVADGGGEIFSDEWKRQVLEPSVKIVKRFLME

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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR11088:SF65 View details on PTHR11088:SF65 Search for proteins/transripts with this domain View external data on PTHR11088:SF65	24	318	295	4.2E-129	–
PANTHER	PTHR11088 View details on PTHR11088 Search for proteins/transripts with this domain View external data on PTHR11088	24	318	295	4.2E-129	IPR039657 Show description in modal box View details on IPR039657 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.50.300 View details on G3DSA:3.40.50.300 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.300	38	317	280	1.0E-114	–
SUPERFAMILY	SSF52540 View details on SSF52540 Search for proteins/transripts with this domain View external data on SSF52540	42	153	112	6.04E-8	IPR027417 Show description in modal box View details on IPR027417 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF01715 View details on PF01715 Search for proteins/transripts with this domain View external data on PF01715	75	151	77	8.7E-18	IPR018022 Show description in modal box View details on IPR018022 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF01715 View details on PF01715 Search for proteins/transripts with this domain View external data on PF01715	167	262	96	1.7E-11	IPR018022 Show description in modal box View details on IPR018022 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:1.10.287.890 View details on G3DSA:1.10.287.890 Search for proteins/transripts with this domain View external data on G3DSA:1.10.287.890	183	276	94	1.0E-114	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0008033 View details of GO:0008033 AmiGO InterPro QuickGO	Biological process	TRNA processing	The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.	Subterm of View details of GO:0006399 View details of GO:0034470

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0339400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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