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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0342500 |
| Transcript ID | LotjaGi5g1v0342500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectate lyase; TAIR: AT5G04310.3 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9SCP2|PLY12_ARATH Probable pectate lyase 12; TrEMBL-Plants: tr|A0A072VRH1|A0A072VRH1_MEDTR Pectate lyase; Found in the gene: LotjaGi5g1v0342500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:65958122..65959431) extracted from Lotus japonicus Gifu genome v1.2.
AGAATGCTTCCCATAACCTGCATTCTTTTAATGTTCCTTCTCAGTTCATCTTTCTCTCCCCCAATCATAGCCAAAACTTT CTCCAATCTCACTTTGCCCCACCAACACCCTTACCCTGAAGCTGTTGTTCACCAAGTTCAGAGGTAAACTAAGCAACAAC ATTAACATCTCTGCATTCTTCATTCTTCATCATTACTAACATTTTCTTCACAAACCCAACTGAAATTTAAGGTTGTTTTG TTCTAATGTTGCAGGGAAATCAATGTCTCACTCACAAGAAGGCAAATGCTCTCAAAGGACCAATCTGCTGCTCCTTCCTG TTTGACAGGAAACCCAGTTGACGATTGCTGGCGGTGCGACACAAACTGGGCAGCAAACCGCCAGAAGCTAGCGGAATGCG GCATAGGATTCGGCCGCGCCGCCATGGGAGGCAAAAACGGCCAGATCTATGTTGTTACAGACTCCTCCGACCGTGACCCG GCGAACCCAGTTCCAGGCACACTCCGCCACGCCGTCATCCAAGACGAGCCACTCTGGATCGTGTTCGCCGCCGACATGAC AATCAACCTCCGTCACGAGCTAATCTTCAACAGCTACAAAACCGTCGACGGGCGCGGCGCGAATGTCCAAATCACCGGCC ACGGCTGCATCACACTCCAATACATCTCCAACGTGATCATCCACAACATCCATGTCCACCACTGCAAACCCTCCGGGAAC ACGAACATACGCGCGAGTCCCACACACGTTGGGTGGAGAGGCGTATCGGACGGCGACGGGATCTCCATCTTCGGCGCTCG GAACATCTGGATCGACCATTGCTCGTTGTCGTACTGCGCCGATGGGTTGATTGATGCGATAATGGGATCGACGGCGATAA CGATTTCGAACAACCATTTTGCTCACCATGATGAGGTGATGCTGCTTGGGCACAATGATAAGTATACGCCGGATAGGGGA ATGCAGGTGACGATTGCGTTCAACCATTTTGGTGCTGGTTTGGTGCAGCGAATGCCAAGGTGTAGGCTCGGTTATATTCA TGTGGTGAACAATGATTTCACGCAGTGGGAGATGTATGCCATCGGCGGCAGCGCTAACCCCACCATCAACAGCCAGGGTA ACCGTTATACTGCTCCGGCGGATAATAATGCCAAAGAGGTAAGGTTAGTTTGGTAATTATCAACTTCTTTTACTATTAAA TTACATGATTAATAATTAATTATGATAACATAATGTAATAATCTAGGTGGTGGTAATATTTTTCTTCCCGAACTTATATG TCATTTCACTCTTACCAGTTAGGATGTTGA
CDS sequence (LotjaGi5g1v0342500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCCCATAACCTGCATTCTTTTAATGTTCCTTCTCAGTTCATCTTTCTCTCCCCCAATCATAGCCAAAACTTTCTC CAATCTCACTTTGCCCCACCAACACCCTTACCCTGAAGCTGTTGTTCACCAAGTTCAGAGGGAAATCAATGTCTCACTCA CAAGAAGGCAAATGCTCTCAAAGGACCAATCTGCTGCTCCTTCCTGTTTGACAGGAAACCCAGTTGACGATTGCTGGCGG TGCGACACAAACTGGGCAGCAAACCGCCAGAAGCTAGCGGAATGCGGCATAGGATTCGGCCGCGCCGCCATGGGAGGCAA AAACGGCCAGATCTATGTTGTTACAGACTCCTCCGACCGTGACCCGGCGAACCCAGTTCCAGGCACACTCCGCCACGCCG TCATCCAAGACGAGCCACTCTGGATCGTGTTCGCCGCCGACATGACAATCAACCTCCGTCACGAGCTAATCTTCAACAGC TACAAAACCGTCGACGGGCGCGGCGCGAATGTCCAAATCACCGGCCACGGCTGCATCACACTCCAATACATCTCCAACGT GATCATCCACAACATCCATGTCCACCACTGCAAACCCTCCGGGAACACGAACATACGCGCGAGTCCCACACACGTTGGGT GGAGAGGCGTATCGGACGGCGACGGGATCTCCATCTTCGGCGCTCGGAACATCTGGATCGACCATTGCTCGTTGTCGTAC TGCGCCGATGGGTTGATTGATGCGATAATGGGATCGACGGCGATAACGATTTCGAACAACCATTTTGCTCACCATGATGA GGTGATGCTGCTTGGGCACAATGATAAGTATACGCCGGATAGGGGAATGCAGGTGACGATTGCGTTCAACCATTTTGGTG CTGGTTTGGTGCAGCGAATGCCAAGGTGTAGGCTCGGTTATATTCATGTGGTGAACAATGATTTCACGCAGTGGGAGATG TATGCCATCGGCGGCAGCGCTAACCCCACCATCAACAGCCAGGGTAACCGTTATACTGCTCCGGCGGATAATAATGCCAA AGAGTTAGGATGTTGA
Protein sequence (LotjaGi5g1v0342500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLPITCILLMFLLSSSFSPPIIAKTFSNLTLPHQHPYPEAVVHQVQREINVSLTRRQMLSKDQSAAPSCLTGNPVDDCWR CDTNWAANRQKLAECGIGFGRAAMGGKNGQIYVVTDSSDRDPANPVPGTLRHAVIQDEPLWIVFAADMTINLRHELIFNS YKTVDGRGANVQITGHGCITLQYISNVIIHNIHVHHCKPSGNTNIRASPTHVGWRGVSDGDGISIFGARNIWIDHCSLSY CADGLIDAIMGSTAITISNNHFAHHDEVMLLGHNDKYTPDRGMQVTIAFNHFGAGLVQRMPRCRLGYIHVVNNDFTQWEM YAIGGSANPTINSQGNRYTAPADNNAKELGC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 349 | 349 | 7.4E-208 | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| PANTHER | 1 | 349 | 349 | 7.4E-208 | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 23 | 23 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| Phobius | 16 | 23 | 8 | - | – | |
| Phobius | 24 | 351 | 328 | - | – | |
| SUPERFAMILY | 64 | 345 | 282 | 6.45E-88 | ||
| Gene3D | 72 | 350 | 279 | 5.6E-105 | ||
| PRINTS | 95 | 112 | 18 | 5.7E-62 | ||
| PRINTS | 119 | 144 | 26 | 5.7E-62 | ||
| SMART | 147 | 344 | 198 | 1.0E-91 | ||
| Pfam | 154 | 336 | 183 | 1.8E-21 | ||
| PRINTS | 155 | 171 | 17 | 5.7E-62 | ||
| PRINTS | 219 | 240 | 22 | 5.7E-62 | ||
| PRINTS | 299 | 318 | 20 | 5.7E-62 | ||
| PRINTS | 321 | 340 | 20 | 5.7E-62 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0342500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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