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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0343400 |
| Transcript ID | LotjaGi5g1v0343400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB-like transcription factor family protein; TAIR: AT5G04760.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA; TrEMBL-Plants: tr|G7ZYT0|G7ZYT0_MEDTR MYB-like transcription factor family protein; Found in the gene: LotjaGi5g1v0343400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66066566..66068775) extracted from Lotus japonicus Gifu genome v1.2.
TTCTTATTTTCCAAATTCTCCCACCAAACTCAAACAATCGCAGCGAAATCCCCAAGAAACAAACCGAGTTCATTTCATTT CATTTCTCACAACGAAAACAAACAAACCGTTGCAACACGAAACCATTAACCACGCTTTCTATTCAACGCCGATGTTTCAC GAGAGCACTGCTGCGATCGCCGCCACGGCGCGGTGGCCGACTCACCACCAACCGAGTCAGTGGACTCGCTACCATGACAA GCTCTTTGAACGAGCTCTGCTAGCTGTGCCGGAGGATTTACCGGACCGCTGGGAGAAGATCGCTGAGCAGGTGCCTGGGA AGTCGGCGGCGGAGGTCAGGGAGCACTACGAAGCTTTGGTTCATGACGTGTTTGAGATCGATTCGGGGCGCGTTGAGGTG CCGAGTTATGCTGATGACTCGGTGGCGGATGGCGGCGGAGATGGGTGGGATTCTTCGAACCAGATCTCTTTTGGGTCGAA GTCGAAACATGGTGGTGATAACGAGAGGAAGAAAGGGACACCGTGGACTGAAGAGGAACACAGGTATATAAGGATTTTGC TTCAATTCGTTTTTGGGGTTTTGATTTTGGGGGTTTTTCATTCAACTTAGCTGTTTTTGGATGCATAATTTTTTAGGGTT TTGGTTTGACTTTGTGTTTTGTAGATTTTGATTTTCAGCTGCACTTAGCTGTCACTGCTTTATGAAAAGGCAGATTCATT TTCTATAATTGAAGAATTTTTGAAGAATCTTTTCAATTTGTTTGAGTTGTGGGATTAAATTCTCATCTTCACTGTGTGCA TTCATGCATTTCTGTTGCTTGTACTTGAATTTTGATTTCTAAGAACCTGAATTAGGAAAAGAAGCAAAAAAATTTGGTGA AATTTTTCATGATTAGAATACTTTCCTGGTTGCTATCCATTTGAATTAGGGTTTTGAATTGCCGTTGCGGCCGCAGCTGT CCTGATTGTTTGAAATTGATGTTATGGTCATGGTTGGCGCTGCGTCACGAATTGTTGAAAAATGGTGGCTGATGCTGTCG CAATTGCAGTCACATTGGCTCCAAAAATGGTCGCAACTGCGGTTGTGGACCGCAATTTGAAACCCTGCCTGTGCAATTGC ATTCAATTGCGGGTTGATGCGCTCGCAATTTAAAACCTTATTTGAATAGTGCTGTTTCTTTCTAGGCATTTTTCATTATG TTGTAGTTGTTACTTGTTACTTCTCCTTGACATGAAGTTCTGGTCGGGCAATACTGCTAATTTTATGGTTGTTGATGATC TCTTGTCAATCTGTGACAGGCTGTTCCTTGTTGGGCTAAGCAAGTTTGGCAAAGGAGATTGGAGAAGCATTTCAAGGAAT GTTGTTGTGACAAGAACACCGACTCAAGTAGCTAGCCATGCCCAGAAGTACTTCCTTCGCCAGAATTCGGTGAAAAAAGA GAGGAAAAGGTCAAGTATCCATGACATAACCACGGTGGACAGTAACTCTGTGCCTGCGCCAATTGATCAGAATTGGGTTC CTCCTCCAGGTGGTTCAATGCAGCAACACTCACAAGAAATGCAGCAATACCCGTCGAACAATTTGCATGATCAAATGGGT AGATTTGGGTATTCAAACTTTGGTTTTTAAATTGTAAAGGGTACTAGGAAGCTGTGTGTTCTGTGTGTACATAATGCAGT AGGTTTCATTCATCTGGTGTTATTTGTAAAGTCTGGTGGTGTTAGCTGACAGAGCAAGTAGGAGTGTTTCTAATTGAATT ATAGTGTAGCTTTTGTTTGAATTCCTTTGTGAATAATATAAATGAACTATAGTGAGCAGGGGAGGTTAGTGAAATCAAAT AGGGGACTTTATAGGAATGAATTCAACAGCAATGGAATTTTTTTCTGTGTTCAATTCAATTTCTACTGCTTTATAATTTG GATTATCACCTTGCGAGTTGCCGGTTGAGTAATTAGTGTTATACATTCAATTCAACCGGCAATCAGAAGATTCAGAACCT GCTTTGCTTAATGTTCTTGATACTCTATGGTAAAGGCTTTGAATCTATTAAAAGATAGTGTAGCTTTTGTTTGAATTCCT TTGTGAATAATATAAATGAACTATAGTGAGCAGGGGAGGTTAGTGAAATCAAATAGAGGACTTTATAGGAATGAATTCAA CAGCAATGGAATTTTTTTCTGTGTTCAATTCAATTTCTACTGCTTTATAA
CDS sequence (LotjaGi5g1v0343400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTCACGAGAGCACTGCTGCGATCGCCGCCACGGCGCGGTGGCCGACTCACCACCAACCGAGTCAGTGGACTCGCTA CCATGACAAGCTCTTTGAACGAGCTCTGCTAGCTGTGCCGGAGGATTTACCGGACCGCTGGGAGAAGATCGCTGAGCAGG TGCCTGGGAAGTCGGCGGCGGAGGTCAGGGAGCACTACGAAGCTTTGGTTCATGACGTGTTTGAGATCGATTCGGGGCGC GTTGAGGTGCCGAGTTATGCTGATGACTCGGTGGCGGATGGCGGCGGAGATGGGTGGGATTCTTCGAACCAGATCTCTTT TGGGTCGAAGTCGAAACATGGTGGTGATAACGAGAGGAAGAAAGGGACACCGTGGACTGAAGAGGAACACAGGCTGTTCC TTGTTGGGCTAAGCAAGTTTGGCAAAGGAGATTGGAGAAGCATTTCAAGGAATGTTGTTGTGACAAGAACACCGACTCAA GTAGCTAGCCATGCCCAGAAGTACTTCCTTCGCCAGAATTCGGTGAAAAAAGAGAGGAAAAGGTCAAGTATCCATGACAT AACCACGGTGGACAGTAACTCTGTGCCTGCGCCAATTGATCAGAATTGGGTTCCTCCTCCAGGTGGTTCAATGCAGCAAC ACTCACAAGAAATGCAGCAATACCCGTCGAACAATTTGCATGATCAAATGGGTAGATTTGGGTATTCAAACTTTGGTTTT TAA
Protein sequence (LotjaGi5g1v0343400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFHESTAAIAATARWPTHHQPSQWTRYHDKLFERALLAVPEDLPDRWEKIAEQVPGKSAAEVREHYEALVHDVFEIDSGR VEVPSYADDSVADGGGDGWDSSNQISFGSKSKHGGDNERKKGTPWTEEEHRLFLVGLSKFGKGDWRSISRNVVVTRTPTQ VASHAQKYFLRQNSVKKERKRSSIHDITTVDSNSVPAPIDQNWVPPPGGSMQQHSQEMQQYPSNNLHDQMGRFGYSNFGF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 17 | 83 | 67 | 1.1E-18 | – | |
| ProSiteProfiles | 19 | 73 | 55 | 7.148 | ||
| SMART | 20 | 72 | 53 | 0.0015 | ||
| PANTHER | 22 | 235 | 214 | 1.8E-84 | – | |
| PANTHER | 22 | 235 | 214 | 1.8E-84 | – | |
| SUPERFAMILY | 22 | 78 | 57 | 1.71E-10 | ||
| CDD | 24 | 70 | 47 | 4.73232E-5 | ||
| MobiDBLite | 85 | 124 | 40 | - | – | |
| MobiDBLite | 97 | 111 | 15 | - | – | |
| ProSiteProfiles | 117 | 173 | 57 | 20.047 | ||
| SUPERFAMILY | 119 | 174 | 56 | 4.49E-17 | ||
| TIGRFAM | 120 | 172 | 53 | 2.2E-17 | ||
| SMART | 121 | 171 | 51 | 5.7E-12 | ||
| Gene3D | 123 | 176 | 54 | 1.7E-17 | – | |
| CDD | 124 | 169 | 46 | 2.43278E-10 | ||
| Pfam | 124 | 168 | 45 | 8.1E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi5g1v0343400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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