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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0346600 |
| Transcript ID | LotjaGi5g1v0346600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT2G35130.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130; TrEMBL-Plants: tr|A0A0B2PPY6|A0A0B2PPY6_GLYSO Pentatricopeptide repeat-containing protein; Found in the gene: LotjaGi5g1v0346600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66290011..66291077) extracted from Lotus japonicus Gifu genome v1.2.
AACTTCAAATTGTTTTAAAATATGAATTTTATGCAGGATGGTAAATCTTTTATGGCCATGTACTTTGAAACCTTGATGTG AGTTATTTTCTGCTATAAATTTATATCTAGGAAAGATATCAAGATTTTTCTTCCCCCTACAGTCGTGCAGGTTTTCCTTA TGGGGCTGCAGAAATTTTTTCATTAATGCAGCACATGGGATGTGAACCAGATAGAGCCTCCTATAATATCTTGGTAGATG CATATGGCAGAGCAGGTTTTCTAAATGGTACTTACCTTGCATTAAAAGTAATCATTTTATTTTGCTTATTTACATGTTCT ATTATACTAATGGATTGAAACACATGCTGAGCAGATTGCTTTCCTTTCTTGTCTTTTTTGAATGATTGAAACAGATGCCG AAGCTGTATTTGAAGACATGAAAAGAGTGGGAATAACACCAACAATGAAATCCCACATGGTACTTTTATCTGCCTTTTCC AAAACTGGCAATGTGAGTAAATGTGAGGACATTCTCAACCAAATGTGCAAATCTGGCCTGAAACTAGACACTTTTGTTCT AAACAGCATGCTGAACTTGTATGGACGGTTAGGCCAATTTGGAAAGATGGAAGAAGTTTTGACAGTGATGGAAAATGGAT CATGTGAAGCTGATATTAGCACATACAATATCTTGATAAATAGGTATGGTCAAGCTGGATTCATTGACAAAATGGAAGGC CTATTTCAATTGTTGCATAGTAAAGGTTTGAAACCTGATGTGGTGACTTGGACTTCACGTATTGGAGCATACTCTAAAAA GAAGCTTTATGTAAGGTGCTTAGAAATATTTGAAGAAATGATTGATTCTGGTTGCTACCCTGATGGAGGAACAGCTAAGG TGCTCCTTGCAGCATGCTCCAATGAAGATCAGACTGAGCAGGTTACTACTGTGATTAGAACAATGGACAAGGATATCAAA ACTGTTCTGACACCAGTATAAGTTGCTTGAACTTTGATATTGTAGTCAACAATAATGTATTATATATCTGAAACTTTTGT TTAAAAAAATGTTCCATCCCCAGGAAG
CDS sequence (LotjaGi5g1v0346600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGCACATGGGATGTGAACCAGATAGAGCCTCCTATAATATCTTGGTAGATGCATATGGCAGAGCAGGTTTTCTAAA TGATGCCGAAGCTGTATTTGAAGACATGAAAAGAGTGGGAATAACACCAACAATGAAATCCCACATGGTACTTTTATCTG CCTTTTCCAAAACTGGCAATGTGAGTAAATGTGAGGACATTCTCAACCAAATGTGCAAATCTGGCCTGAAACTAGACACT TTTGTTCTAAACAGCATGCTGAACTTGTATGGACGGTTAGGCCAATTTGGAAAGATGGAAGAAGTTTTGACAGTGATGGA AAATGGATCATGTGAAGCTGATATTAGCACATACAATATCTTGATAAATAGGTATGGTCAAGCTGGATTCATTGACAAAA TGGAAGGCCTATTTCAATTGTTGCATAGTAAAGGTTTGAAACCTGATGTGGTGACTTGGACTTCACGTATTGGAGCATAC TCTAAAAAGAAGCTTTATGTAAGGTGCTTAGAAATATTTGAAGAAATGATTGATTCTGGTTGCTACCCTGATGGAGGAAC AGCTAAGGTGCTCCTTGCAGCATGCTCCAATGAAGATCAGACTGAGCAGGTTACTACTGTGATTAGAACAATGGACAAGG ATATCAAAACTGTTCTGACACCAGTATAA
Protein sequence (LotjaGi5g1v0346600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQHMGCEPDRASYNILVDAYGRAGFLNDAEAVFEDMKRVGITPTMKSHMVLLSAFSKTGNVSKCEDILNQMCKSGLKLDT FVLNSMLNLYGRLGQFGKMEEVLTVMENGSCEADISTYNILINRYGQAGFIDKMEGLFQLLHSKGLKPDVVTWTSRIGAY SKKKLYVRCLEIFEEMIDSGCYPDGGTAKVLLAACSNEDQTEQVTTVIRTMDKDIKTVLTPV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 109 | 109 | 3.2E-28 | ||
| PANTHER | 3 | 215 | 213 | 1.6E-42 | – | |
| Pfam | 4 | 37 | 34 | 9.8E-11 | ||
| ProSiteProfiles | 9 | 43 | 35 | 13.11 | ||
| TIGRFAM | 12 | 44 | 33 | 3.8E-9 | ||
| ProSiteProfiles | 44 | 78 | 35 | 8.769 | ||
| TIGRFAM | 49 | 80 | 32 | 4.0E-6 | ||
| Pfam | 50 | 76 | 27 | 5.3E-4 | ||
| Pfam | 79 | 125 | 47 | 3.7E-7 | ||
| ProSiteProfiles | 79 | 113 | 35 | 8.879 | ||
| TIGRFAM | 82 | 114 | 33 | 3.1E-4 | ||
| Gene3D | 110 | 220 | 111 | 1.9E-23 | ||
| ProSiteProfiles | 114 | 148 | 35 | 11.553 | ||
| TIGRFAM | 117 | 150 | 34 | 5.5E-9 | ||
| Pfam | 148 | 196 | 49 | 1.6E-8 | ||
| ProSiteProfiles | 149 | 183 | 35 | 11.17 | ||
| TIGRFAM | 151 | 184 | 34 | 1.2E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0346600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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