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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0347400 |
| Transcript ID | LotjaGi5g1v0347400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB transcription factor-like; TAIR: AT1G14600.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600; TrEMBL-Plants: tr|V7BAB2|V7BAB2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0347400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66362030..66366848) extracted from Lotus japonicus Gifu genome v1.2.
ATTGAGAGAGCATTGCATAGGTGTAATCATTTCTTGGAAGCAACCTCAGTGCATTGCAATGCAAACACAACACACACAAC CCTTCTCGTGATTTTCATCTCAGAAAAAAGTGCTTTTCTTGTTTTGGCATTATTCAATTCATTTTTCTTTTCAATTTAAC ATGCATTTATTTTTATGTAAATCATTAAATTAAATTGGTCCCTGGAAGTGTTAGCTGTGCTAACAAGTTCATCGTTAGAA AAAGAAATTACTTCCGCGGTATCTAATTCACTTGACCGACATTTTATACAATCATTGACCGCAGAGGTATTTTCTAAGCC TCAGAGCGAACTTATCAGTGCCCAACACTTTCGAGAACCAATTTTTTTAACATTTAGTCTTTATTTTGTCATTAGCAACT CAAAGGTACAGCAACCCCCATCAGGTATTATCAGTGACTCCAACAAAGTCCTAAGGAATTTGCAGACCCCTCCACTCATT TCATCTTCGTCTTTTCATTTTCTCTTCTGATTCATATTCCTTTTTCTCTTTCTCTCTCTCCCTTTTGCCCCAGCTGGTTT TTTCTGTTTGAGTAGGGAGCAAAAAGGTTCTGCTTTTTCTCTATACTACATATATAGTTCTTAAGGGGCACCACCTAGCT ACTTGGTTTTGCACTCTGGAGCAAGATAAAATAGAAAAGTGAACATTTTTTTGACACTACCAAGTGTTTGTGTATTTGTC AAACAGAAGAAGATTCATAACAAGAGAGAATGAGTAGTTGTGGAAGAGAAGGTGCTGTGAGGCAGTATATAAGGTCAAAG GTTCCTCGTCTAAGATGGACTCCTGAACTTCACCGTTGCTTTGTTCATGCCATTGAAAGCCTTGGTGGTCATCACAGTAA GTTCACTCTACACCATTGATTTTTCTCAACGTTGGTGTTATCTATTTACATGCTAAGTTTGATTGATGAATTTCTGAGAG ATTTTGATGTTCTTTTTTTGATGATCTTGTTTTTTGCAGAGGCTACTCCTAAGCTTGTTCTTCAGATGATGGATGTTAAA GGGCTAACAATTTCACATGTCAAGAGTCATCTTCAGGTTAATGTTCTTTTGATTTTTGGTTCTGTTTTTCTCAAAAAAAC TGATGTGTTTTCTTTTCACTGAGTCACTGTTTCATGACTGATTTCTGTTTTGTTTATTGTGTTTCTTTCTTTCTCTCTTT ATCCAAACCAGATGTACAGGAGCATGAGAGGTGAATTGGGCAGACAAGGTACTATAAGCCTTCTTTTACTGCAAAAGCAC TTCAACAACAATGAGTTTTTTTTTTTAGTTTCTGATGATCATGGCTCTTCAATGCACGCTTCCTTCCTCTCATACTAGTC CTATTTACCTGTCATATCCATGTCATACGTGGAAACAACTTTACATGCTCTCTGCATTCAATGCAGCAGACTAAGTCTAT TCCTGTTTCTTCTCTTGGTACTTATTTGAAGTTCAAAAGCAAAGTCTATGATCTTGCATTTATGCATACAAGTGGGAAAT CTGCAACTGCATTGCACATTTATTAGTTGCTTCTGCACTTAGTTGATGCCAAAATAGTGTAGGAAGAAAAAGAGACTAAT GTCCTTGTAAATCTACTTGTAATGGTAGTTTTGATGAAATCCACTGAAATCTTTTGGTTGCTGTTAATGAATGTGTTGGT ACATGATTTTCAGGTAGGACAATATCCTCCCAACAGCATGGAAACCAATCTTTTGAAGAACATGATGATGGGTGTGTTGA TCAAGCAAACAATGATGTTGGTGTTCAGCTTCAGCACTCTTGTTCAAACCCCAATATCAGGAGAGAATCTGATTCCTCAT TTGGCTACAGTAATCTCACATCTAAAAGGTAGCTTTTTTACTTCTTCCTTGAAATAATTTCAGACTTTTCAAACCTCAAA AAATGTGGGGTATGTGGGGGGGGGAAGCAAAAAGGATCATTGATGTTTTGTTTGTTTGAGAATTGAGATCCTTTTGCTTT TCTGTACCAGCTTTAACTTTTGCTTGCTTCTTTTGATATTCCTTTTCATTTGGATTCTCTTCTCACCAGAGCTAGAACCA GTTCCATCTCAGAGAGCCAAAGAATATGTGATGCAGTTCCTAATCCGTACTGCTTTTATGACTATCTGGGTGAACAGAAG AATGGAATAAAGGAATTTTGTGGTGGTTCAAGATGGCAGCAGATTAAGACACAACAACCTCATTCCACACCATTCCCTCT GCTACCAGATTTTCCTAATCTCACTTCATTCAAATGTCCAAACCAAGAATCTGATTTTCTTCAGGTGAGAGGTGCTCCAT GCTGTGCTAATAAAAACAAGCCTTCTTTATCTCTTTTGGTACTTTCGTTTATCTGCACTATATACTTGCTTTTTATGCTG GGGTTGAGTGTGATGTTGGTTATGGTTTATTTTTTACCCTATGAAAAGTTCCTAATACTCCACTTTTGTTCGGTAAGATC TCACGTTTTACCTGTCAAATATCCACTGCTTTTGGCTTCACGTTGTGTGTGTGGTAAATGGGAAAACCATTGGTTTCCTT TTCTCAAAAGTAAATGATCTTAAACTAAACTTGACTTGTTCATACTTTCAGAATAAGTGCAAGTTTTGAAATTCGTTGGA AAACCACCGATTAAGCCAAAATCACACACTTAAACTAAGTTTGTGTTTGGATATCAATTGAGAGTGAAACGTGAACAGAT TTTTGTCTCAATCCATAAGAGTTCTATTTACTTTTGTTTGTCTGGATATGAGTGTTAATGTCTATTTGCAATGGTTCTAA TGGAATCTCCTTTAGAAATCATGGTGGACACTCCTTTAGTTTTTTGCTTATGTCCATAATGATTTTGATTTAACTGTAGT TGTATAATGAGTTTTCAGATGGACTAAACACCATTCATTTTGAAGTATTATGGTTATTAACACAACTTCAAGATAGATTT TTTCTTTTCAATTTTTAATTGAGACTAAAAGTTGAAGACAACCCTTTTGTTCTAACTAAATTCTTGAATATGTTTTCTAA TCAGAAATGTTTTTATTGAAACAACACAAAAAGGGTCCTGCGTATCTTTGTTCAAAATTATTCTTTTTAACTTCTTTTGG AAAGTAAGGACCTAATTTCTAAGATGGTTGATAGAAGATCTATTCACACATTGCAGCTGTGTTTTCATTCTGAGTATTTT TTTCCATAACAAAGTAGGTTTTTTGAAAACCACACTTGTACGCACAATGAACACGCTAGCTACTATGAATGTAAATAAAT TATTATAGGTAACATTTTTTTGGGGTCAAGATTTAGGTAACATTTAATCGCCTTGTGAAGTGGTTAGGTTGTGTTTGGTC CCCATGTACGACCTTAGGGAGATTTTGATTGTCCAAAAATTATCATGAGCTACATACAATGTGGCCAAAAGGGTCATCGT GGCTCTTAACTTGAACACACCTTTATTTCTGAATTTTTCACATTCAGTGGTCCTGCCTAATTATTGAAATTCTGACTTTT TATATGGAAATTTATGTTTGCCACTTTTTTGCATTTATACGGTCAATACTTGTTTTGAAGTTACAAAGTCCTTTTAAACA GGACTTAAAATCTCCAGTCCCCCACATACCCCCACACACTCCAATCCAAAACTAAAAGGATAGCCTCCTATTATATGTAT GGTCCCTCTATTACTAAAAAATTGTCAATTTATAGCATGTTTATACGAGTTTCTCTTTTATCAAAATCAAATTTGATACC TAGAAACTACTCATTGAAGCTTCTCTCCATAATTCATTCGACTTTAGATTTATAGTAGACGGTTTTCAAACATACATTTA ATTTTTTTTCTTAAGAGAATTTGTTAACTAAACAAAACACATCCTCTCACATTTCTCACATTAGTGGGAGGGAGTTAATG ATATGTTAGGAAATTCATCTATATTTGATTCTAAGGTCAAAATCAATTTTTAAAGATAGATTATGTGAATTCTTGATTCG AACATGTTATTAGTGCACAGCTAGTTTCATAGTATATTTGGATTGGTGGTAGACAACAGTGCATAAGCTCCATATGCTAA AGCTATTTTCTTGAAGTGATTATTGGCTCACAACCTTTAGAAACAAACACATTCTTTTTAAAAAGAGCTACTTGCTTTTC TTTCTTCATTATCTCCCTTTCTAGGATACGCTATAGGAATAGTGACCAGCGGTTGGATATATTCCATGCCACCATTAATT CTTATGGATTTCCCCCCTTCTCTTCTTGACAGGTTACTAAATTAAATGATAGAAAGATCACTTCGCAGCCAATTAATGTA CTTGAGAACAGGGAGAAGGCACATGCAGAAGTTGAAGGTGTAGGAGGAGGAGGATATAATGAGTTGTCATTATCACTTAC ATTACCAAATCCTTCACCTCAGAGAAGTAATGGTTCTTGGGGCAGTGAGATCAGTGAGGCAATCTCATCATACCCTGGGT TTAGCAACTACAAGGACTGCTCTAGTTCATCCACTGTCAAAGAAAGAGTCAATTTGGACCTGTCTTTGGCCATATGTGGC AATTGATTTGATGCTCTCAATTGTGACATGATATATTTTAGGCATAATCCACTCTAGGACTTTCTTCACTCCCTTAGTTT ACAATTTTGGTAATTTTTCTTTGTTTGAACCGGGTACCTTTTCTGTCAGCATTTTAATTAATTACTTTATTAGTCTATAT ATATATATTTGAGGTTCATTTACTTATACTCCTACTTAATACCTCATAAGAGGTTAAAAACTGTTAACTTGAAGCAACCC AAAAGCCCAAAGAGAATCT
CDS sequence (LotjaGi5g1v0347400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTAGTTGTGGAAGAGAAGGTGCTGTGAGGCAGTATATAAGGTCAAAGGTTCCTCGTCTAAGATGGACTCCTGAACT TCACCGTTGCTTTGTTCATGCCATTGAAAGCCTTGGTGGTCATCACAAGGCTACTCCTAAGCTTGTTCTTCAGATGATGG ATGTTAAAGGGCTAACAATTTCACATGTCAAGAGTCATCTTCAGATGTACAGGAGCATGAGAGGTGAATTGGGCAGACAA GGTAGGACAATATCCTCCCAACAGCATGGAAACCAATCTTTTGAAGAACATGATGATGGGTGTGTTGATCAAGCAAACAA TGATGTTGGTGTTCAGCTTCAGCACTCTTGTTCAAACCCCAATATCAGGAGAGAATCTGATTCCTCATTTGGCTACAGTA ATCTCACATCTAAAAGAGCTAGAACCAGTTCCATCTCAGAGAGCCAAAGAATATGTGATGCAGTTCCTAATCCGTACTGC TTTTATGACTATCTGGGTGAACAGAAGAATGGAATAAAGGAATTTTGTGGTGGTTCAAGATGGCAGCAGATTAAGACACA ACAACCTCATTCCACACCATTCCCTCTGCTACCAGATTTTCCTAATCTCACTTCATTCAAATGTCCAAACCAAGAATCTG ATTTTCTTCAGGTTACTAAATTAAATGATAGAAAGATCACTTCGCAGCCAATTAATGTACTTGAGAACAGGGAGAAGGCA CATGCAGAAGTTGAAGGTGTAGGAGGAGGAGGATATAATGAGTTGTCATTATCACTTACATTACCAAATCCTTCACCTCA GAGAAGTAATGGTTCTTGGGGCAGTGAGATCAGTGAGGCAATCTCATCATACCCTGGGTTTAGCAACTACAAGGACTGCT CTAGTTCATCCACTGTCAAAGAAAGAGTCAATTTGGACCTGTCTTTGGCCATATGTGGCAATTGA
Protein sequence (LotjaGi5g1v0347400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSCGREGAVRQYIRSKVPRLRWTPELHRCFVHAIESLGGHHKATPKLVLQMMDVKGLTISHVKSHLQMYRSMRGELGRQ GRTISSQQHGNQSFEEHDDGCVDQANNDVGVQLQHSCSNPNIRRESDSSFGYSNLTSKRARTSSISESQRICDAVPNPYC FYDYLGEQKNGIKEFCGGSRWQQIKTQQPHSTPFPLLPDFPNLTSFKCPNQESDFLQVTKLNDRKITSQPINVLENREKA HAEVEGVGGGGYNELSLSLTLPNPSPQRSNGSWGSEISEAISSYPGFSNYKDCSSSSTVKERVNLDLSLAICGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 313 | 313 | 1.2E-103 | – | |
| PANTHER | 1 | 313 | 313 | 1.2E-103 | – | |
| Gene3D | 15 | 75 | 61 | 2.0E-25 | – | |
| ProSiteProfiles | 15 | 75 | 61 | 10.781 | ||
| SUPERFAMILY | 17 | 72 | 56 | 1.38E-15 | ||
| TIGRFAM | 19 | 72 | 54 | 1.6E-23 | ||
| Pfam | 21 | 71 | 51 | 1.0E-6 | ||
| MobiDBLite | 81 | 101 | 21 | - | – | |
| MobiDBLite | 117 | 139 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi5g1v0347400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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