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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0352700 |
| Transcript ID | LotjaGi5g1v0352700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT3G59040.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LYT2|PP287_ARATH Pentatricopeptide repeat-containing protein At3g59040; TrEMBL-Plants: tr|A0A151TQA7|A0A151TQA7_CAJCA Pentatricopeptide repeat-containing protein family; Found in the gene: LotjaGi5g1v0352700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66834613..66838668) extracted from Lotus japonicus Gifu genome v1.2.
CTTCTTCTTCTTCATCATCTTCTTCTTCTGCAGTGTGAATTTGCAAACCCTGCTTCATTTCTTCTTCTTCTGGTTTGCCA TGTGCAGTCTCATTTCCAAGACACACTGCCATTTTGGACAGCTTTCGTTGCCACCACTGCACAAAGGGTAAGGGGAGGTG GTGAATTTTGAAAGTGCTTTTGTTTTTTTTTGCTTTTTTGATTGGTTAGTGTTTTTGTGTGTTTGCAGGAAATTGGAATA TGGAATTGTGACGGTGAAGATGCGAAGGAGGAGATTGGAGGTGGTGTGTAAGGGTATGTTGACACCCAGGAAGTTCATGC AGAGGAGGAGGAAAAACACTGTATTCAAGGATGCTGCAGATGAAGCTGAGAAGAAGAATTGGTGGAAACTCATGGAACAA ATTGACCAAGCAGGTTCTGCTGTTTCAGTTCTCTCTGATGAGAAGTTGAAAAACCAGACTATTCCTAAAGACCTTGTTAT TGGTACCTTGGTTAGATTTAAACAGCTCAAAAAGTGGAACCTTGTCATTGAGGTATATATAATACAACCTCATAGTTCTT CTTTATTTTGTGTTTGACTTCATATGTTGTATAATTAGGATACCTTTGGGTAAACGACTTAATTAAGAGCTTTTGGCCAT AGCCATAAGCATTTATCATAGAAGCACTTATTGATAAAAACTAATTTGAGAAACTTGAAATAAGCTGAAAATAGGTTGTA GGTAAGCATAACCTCTTATTCATTAGCTAAACCCAATAGCTTATAAAAATAAGCTCAAAACAGCTTATAAGTAGACCATA AGCTATTTCTATAGGGCTTATGCTATGAGATAAGCTTAAATAAGATCTTCCAAACTGGGCCTAATTGATTAATGATTCTA ATTAATTGTCTGCTGCTATATGATGGTTGTGCTCTTTAGATTCTGGAATGGCTTCGGAATCAAAGCTGGTGGGATTTTGG TAAGATGGATTTCATAATGCTTATCACTGGTTATGGAAAGCTGGGAGACTTCAATGGTGCTGAGAAGGTCTTAGCCTTGA TGAATAAGAATGGTTATCCACCGAATGTGGTGTCTCAGACTTCACTCATGGAAGCATATGGAAAAGGAGGCAGATATAAT AATGCTGAAGCGATATTTCGCAGGATGCAGAAATTTGGCCCTGAACCTTCGGCTGTAACTTATCAGTTAATACTTAAAAC ATTTGTTCAGGTAAAACATACATTTTCACCTGTGCATTTTATTTCCCTTCGAAAGTTAATTTCCCTTACAGCACTAGTGG GATTAGTTATGGTAGTGGCAGTTATTGTTGGTGTTGTATGCTTCTGTTTCCTGTAAGAAATTTTGAATAAAATTCAATAT GTCAAATTTATTGATTGCCTAGTTTCTTGACTTTGATTTCTTCCAGTACTCTTAAAGAAACAAGCACCTTAAACACATTG CCTTATGTGAATTCAAACATGGAGGTTGTATGGGCTACAAATTACAACTACCATGAATTGAAACTAATCATGCGTGTCCC AAAAATGATTGTTCAAATCTAACGCATCTCCTCATGTTTCTTTGATAACTATGTTTAACTCTATATATATTTCTGTATTT ATTGTACGGACTGCGGTTGAGTGTTTGGCTTGCAGTTTTGCATTTGATGACTGATACACTTGCAGGGAGATAAGTTTAAG GAAGCTGAAGAAGTGTTTGAGACTCTACTGGATGACGAAAAGTCACCTTTGAAACCAGACCAAAAGATGTTTAACATGAT GATTTATATGTATAAGAAGGCTGGAAGTTATGATAAGGCTCGCAAGACATTTGCACTGATGGCTGAACGAGGAATCGAAC AATCTACAGTTACATATAATAGCTTGATGTCATTTGAAACAAATTACAAGGAAGTTTCAAACATATATGATCAGGTATTT ATCTATTTTTTGTGTAATCTGTGGTAGATTTGGATTCTTTCATTTCATCTCGGTTATGCTTATTTCACAGACAACACCTT TTCCCCTGAAAACTGCATATATCCTGTAAAGCTGTAACATCATATTATTTTCAAAGGAAGAAAAAACTGGTTTAAACCTA ACTCATGTAAAACTAGATGGTCTAGTTATACTCTATATGAACAGCAGCAGGTTTGGTTTCATGGAGTATTTCTGTGAAAT TCTAAATCTGCCTCTTTCATATAAGATAGTCGGTGATTCACAAGTACATAATCAGAACAGTTTTACGTCATTGCAAATTC CTCCAAGTGATTCGAATTGTGTTATGATCTCGTAATCTTGTTCCATGCTAACTCAATCAAAATTTTCTGAAAAATATTAA ATATATATGATTGTTGAAATTTAGTCCTTATAGACAAGAGACACAAATACAGAAATACTGTCTGGAATTTCACACAGATA ATTATTTCCATTAGTTTTCGTCTTGTTTTTCTCTTCTCCCTTTAATTTCTTGTTTATAATTAATTCATCAGATTTTGAAG TGAATGCCTAAATTTTAGATGCAAAGAGCTGATCTCAGACCGGACGTTGTGAGCTATGCCTTACTCATTAATGCTTATGG GAAGGCCAGGAGGGAGGAAGAAGCATTAGCTGTATTTGAAGAAATGCTTGATGCCGGTGTCAGGTATATTGGAGAATAAA ATTATTACTGCATGGAATAATTTAGTGTATACATTTTTTAAAACAACTATCAGCACTTACCATACTTTGAAATGATAGTT CCATTAATAATGCAAATTTTCAAGTTTGCATCCCTGAAACCTAGAGGTTTCAAGTTTCATAATGCAAATTTTTAGCAGTC ATGTATTAAAAATCTTATCTTTGTAATAAACACTTTCAAAGTGAAACATCCTTCCACTTCAATATCAGTATGTCTTTGTG TTATTGTGAGTCGTTGAGATATTCAAATTCCTATCTTTATCAACCAGGCAAACTGGTTCTTCTGTGCCTATGTATATCAA TAGTTTTTCATTTAATAAGTTTTGATTGTGTGGGACTTTTTTATATAATCCCTGTTCTTTTCTTCTTCACAGACCAACTC GGAAGGCTTACAATATTTTACTTGATGCATTTTCTATATCGGGAATGGTAGAGCAGGCTCGGACTGTGTTTAAAAGCATG AGAAGGGATAGGTAAATTATGTTTTCTTTCTATCAGTAGTTTTTATATTTTAATGTTGGAAGCTTCTGCCATTTTTATTA GAGCACCACATTGTATCATTGTACTTTTTTCCATGGCTGCAGATTCATGCCAGATCTATGCTCATACACTACCATGTTAT CAGCTTATGTCAATGCACCTGACATGGAGGGTGCTGAGAAGTTTTTCAAAAGATTGATACAAGATGGTTTAGAGCCTAAT GTGGTCACTTATGGAGCCTTAATTAAAGGATATGCTAAGGCAAACGATCTTGAAAAGGTTGCGGAGAAGTATGAGGAAAT GCTTGGGCGTGATATCAAGCCCAATCAGACAATTTTAACCACCATCATGGATGCACATGGAAAAAATGGAGACTTTGGCA GTGCTGTTCATTGGTTCAAGGAAATGGAATCAACTGGGTTTCCTCCTGATCAGAAAGCCAAAAACGTCCTTCTATCTTTG GCAACAACAGATGAAGAAAAAGACGAGGCAAATGAACTTGTGGGGCAACATTTCATTGAGAATAACAATTTACCTAAAGT TAATGGTGCTGCTAGATTTGATGATGATGATGATGACGACGACGGCGGTGATGATGCAGAACAAAATAATGATGAAGATT TTGATGTCCAGCTAGACAGTGCTTATGATGAAGAATTTCAAGTCGTCTAAGATATAGACCTAAAACAATTTTGTATGCTT GCAAATTTAGGTTCTTTGTATTTTGTTGTACAACTATATTATATCAGCACGCAATCAAAATTATTTATTTTTGCCATGAT AATTACAACATCAGAAATGCTGGAGGAATTCAGCTGTCAAAAGTGTATTTTCAATGTGAAAAATCAGAAAATGCCTTTTT TTATGTCTCATTATCCATTTATTTTCATGGTATACTAATAGCTTGTTGGATTGGTG
CDS sequence (LotjaGi5g1v0352700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGAAGGAGGAGATTGGAGGTGGTGTGTAAGGGTATGTTGACACCCAGGAAGTTCATGCAGAGGAGGAGGAAAAACAC TGTATTCAAGGATGCTGCAGATGAAGCTGAGAAGAAGAATTGGTGGAAACTCATGGAACAAATTGACCAAGCAGGTTCTG CTGTTTCAGTTCTCTCTGATGAGAAGTTGAAAAACCAGACTATTCCTAAAGACCTTGTTATTGGTACCTTGGTTAGATTT AAACAGCTCAAAAAGTGGAACCTTGTCATTGAGATTCTGGAATGGCTTCGGAATCAAAGCTGGTGGGATTTTGGTAAGAT GGATTTCATAATGCTTATCACTGGTTATGGAAAGCTGGGAGACTTCAATGGTGCTGAGAAGGTCTTAGCCTTGATGAATA AGAATGGTTATCCACCGAATGTGGTGTCTCAGACTTCACTCATGGAAGCATATGGAAAAGGAGGCAGATATAATAATGCT GAAGCGATATTTCGCAGGATGCAGAAATTTGGCCCTGAACCTTCGGCTGTAACTTATCAGTTAATACTTAAAACATTTGT TCAGGGAGATAAGTTTAAGGAAGCTGAAGAAGTGTTTGAGACTCTACTGGATGACGAAAAGTCACCTTTGAAACCAGACC AAAAGATGTTTAACATGATGATTTATATGTATAAGAAGGCTGGAAGTTATGATAAGGCTCGCAAGACATTTGCACTGATG GCTGAACGAGGAATCGAACAATCTACAGTTACATATAATAGCTTGATGTCATTTGAAACAAATTACAAGGAAGTTTCAAA CATATATGATCAGATGCAAAGAGCTGATCTCAGACCGGACGTTGTGAGCTATGCCTTACTCATTAATGCTTATGGGAAGG CCAGGAGGGAGGAAGAAGCATTAGCTGTATTTGAAGAAATGCTTGATGCCGGTGTCAGACCAACTCGGAAGGCTTACAAT ATTTTACTTGATGCATTTTCTATATCGGGAATGGTAGAGCAGGCTCGGACTGTGTTTAAAAGCATGAGAAGGGATAGATT CATGCCAGATCTATGCTCATACACTACCATGTTATCAGCTTATGTCAATGCACCTGACATGGAGGGTGCTGAGAAGTTTT TCAAAAGATTGATACAAGATGGTTTAGAGCCTAATGTGGTCACTTATGGAGCCTTAATTAAAGGATATGCTAAGGCAAAC GATCTTGAAAAGGTTGCGGAGAAGTATGAGGAAATGCTTGGGCGTGATATCAAGCCCAATCAGACAATTTTAACCACCAT CATGGATGCACATGGAAAAAATGGAGACTTTGGCAGTGCTGTTCATTGGTTCAAGGAAATGGAATCAACTGGGTTTCCTC CTGATCAGAAAGCCAAAAACGTCCTTCTATCTTTGGCAACAACAGATGAAGAAAAAGACGAGGCAAATGAACTTGTGGGG CAACATTTCATTGAGAATAACAATTTACCTAAAGTTAATGGTGCTGCTAGATTTGATGATGATGATGATGACGACGACGG CGGTGATGATGCAGAACAAAATAATGATGAAGATTTTGATGTCCAGCTAGACAGTGCTTATGATGAAGAATTTCAAGTCG TCTAA
Protein sequence (LotjaGi5g1v0352700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRRRRLEVVCKGMLTPRKFMQRRRKNTVFKDAADEAEKKNWWKLMEQIDQAGSAVSVLSDEKLKNQTIPKDLVIGTLVRF KQLKKWNLVIEILEWLRNQSWWDFGKMDFIMLITGYGKLGDFNGAEKVLALMNKNGYPPNVVSQTSLMEAYGKGGRYNNA EAIFRRMQKFGPEPSAVTYQLILKTFVQGDKFKEAEEVFETLLDDEKSPLKPDQKMFNMMIYMYKKAGSYDKARKTFALM AERGIEQSTVTYNSLMSFETNYKEVSNIYDQMQRADLRPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTRKAYN ILLDAFSISGMVEQARTVFKSMRRDRFMPDLCSYTTMLSAYVNAPDMEGAEKFFKRLIQDGLEPNVVTYGALIKGYAKAN DLEKVAEKYEEMLGRDIKPNQTILTTIMDAHGKNGDFGSAVHWFKEMESTGFPPDQKAKNVLLSLATTDEEKDEANELVG QHFIENNNLPKVNGAARFDDDDDDDDGGDDAEQNNDEDFDVQLDSAYDEEFQVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 76 | 260 | 185 | 7.1E-34 | ||
| ProSiteProfiles | 105 | 139 | 35 | 9.153 | ||
| PANTHER | 111 | 209 | 99 | 4.7E-88 | – | |
| PANTHER | 111 | 209 | 99 | 4.7E-88 | – | |
| TIGRFAM | 111 | 141 | 31 | 2.4E-5 | ||
| Pfam | 111 | 136 | 26 | 0.0082 | ||
| Pfam | 139 | 186 | 48 | 5.1E-8 | ||
| ProSiteProfiles | 140 | 174 | 35 | 11.148 | ||
| TIGRFAM | 143 | 175 | 33 | 9.9E-6 | ||
| ProSiteProfiles | 175 | 209 | 35 | 8.89 | ||
| PANTHER | 187 | 423 | 237 | 4.7E-88 | – | |
| PANTHER | 187 | 423 | 237 | 4.7E-88 | – | |
| SUPERFAMILY | 190 | 451 | 262 | 2.12E-10 | – | |
| Pfam | 212 | 256 | 45 | 4.1E-7 | ||
| ProSiteProfiles | 213 | 247 | 35 | 10.194 | ||
| TIGRFAM | 216 | 246 | 31 | 5.7E-6 | ||
| PANTHER | 259 | 464 | 206 | 4.7E-88 | – | |
| PANTHER | 259 | 464 | 206 | 4.7E-88 | – | |
| Gene3D | 261 | 365 | 105 | 2.8E-31 | ||
| Pfam | 268 | 326 | 59 | 3.0E-12 | ||
| ProSiteProfiles | 280 | 314 | 35 | 13.285 | ||
| TIGRFAM | 282 | 315 | 34 | 7.2E-9 | ||
| ProSiteProfiles | 315 | 349 | 35 | 10.643 | ||
| TIGRFAM | 318 | 350 | 33 | 8.4E-7 | ||
| Pfam | 349 | 398 | 50 | 1.9E-11 | ||
| ProSiteProfiles | 350 | 384 | 35 | 10.918 | ||
| TIGRFAM | 353 | 386 | 34 | 1.1E-5 | ||
| Gene3D | 366 | 485 | 120 | 2.8E-25 | ||
| ProSiteProfiles | 385 | 419 | 35 | 11.751 | ||
| TIGRFAM | 387 | 420 | 34 | 1.2E-7 | ||
| ProSiteProfiles | 420 | 454 | 35 | 10.49 | ||
| TIGRFAM | 425 | 455 | 31 | 3.4E-7 | ||
| Pfam | 425 | 451 | 27 | 4.7E-4 | ||
| MobiDBLite | 490 | 524 | 35 | - | – | |
| MobiDBLite | 499 | 524 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0352700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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