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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0352700 |
| Transcript ID | LotjaGi5g1v0352700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT3G59040.2 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LYT2|PP287_ARATH Pentatricopeptide repeat-containing protein At3g59040; TrEMBL-Plants: tr|G7IE86|G7IE86_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi5g1v0352700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66834613..66838668) extracted from Lotus japonicus Gifu genome v1.2.
CTTCTTCTTCTTCATCATCTTCTTCTTCTGCAGTGTGAATTTGCAAACCCTGCTTCATTTCTTCTTCTTCTGGTTTGCCA TGTGCAGTCTCATTTCCAAGACACACTGCCATTTTGGACAGCTTTCGTTGCCACCACTGCACAAAGGGTAAGGGGAGGTG GTGAATTTTGAAAGTGCTTTTGTTTTTTTTTGCTTTTTTGATTGGTTAGTGTTTTTGTGTGTTTGCAGGAAATTGGAATA TGGAATTGTGACGGTGAAGATGCGAAGGAGGAGATTGGAGGTGGTGTGTAAGGGTATGTTGACACCCAGGAAGTTCATGC AGAGGAGGAGGAAAAACACTGTATTCAAGGATGCTGCAGATGAAGCTGAGAAGAAGAATTGGTGGAAACTCATGGAACAA ATTGACCAAGCAGGTTCTGCTGTTTCAGTTCTCTCTGATGAGAAGTTGAAAAACCAGACTATTCCTAAAGACCTTGTTAT TGGTACCTTGGTTAGATTTAAACAGCTCAAAAAGTGGAACCTTGTCATTGAGGTATATATAATACAACCTCATAGTTCTT CTTTATTTTGTGTTTGACTTCATATGTTGTATAATTAGGATACCTTTGGGTAAACGACTTAATTAAGAGCTTTTGGCCAT AGCCATAAGCATTTATCATAGAAGCACTTATTGATAAAAACTAATTTGAGAAACTTGAAATAAGCTGAAAATAGGTTGTA GGTAAGCATAACCTCTTATTCATTAGCTAAACCCAATAGCTTATAAAAATAAGCTCAAAACAGCTTATAAGTAGACCATA AGCTATTTCTATAGGGCTTATGCTATGAGATAAGCTTAAATAAGATCTTCCAAACTGGGCCTAATTGATTAATGATTCTA ATTAATTGTCTGCTGCTATATGATGGTTGTGCTCTTTAGATTCTGGAATGGCTTCGGAATCAAAGCTGGTGGGATTTTGG TAAGATGGATTTCATAATGCTTATCACTGGTTATGGAAAGCTGGGAGACTTCAATGGTGCTGAGAAGGTCTTAGCCTTGA TGAATAAGAATGGTTATCCACCGAATGTGGTGTCTCAGACTTCACTCATGGAAGCATATGGAAAAGGAGGCAGATATAAT AATGCTGAAGCGATATTTCGCAGGATGCAGAAATTTGGCCCTGAACCTTCGGCTGTAACTTATCAGTTAATACTTAAAAC ATTTGTTCAGGTAAAACATACATTTTCACCTGTGCATTTTATTTCCCTTCGAAAGTTAATTTCCCTTACAGCACTAGTGG GATTAGTTATGGTAGTGGCAGTTATTGTTGGTGTTGTATGCTTCTGTTTCCTGTAAGAAATTTTGAATAAAATTCAATAT GTCAAATTTATTGATTGCCTAGTTTCTTGACTTTGATTTCTTCCAGTACTCTTAAAGAAACAAGCACCTTAAACACATTG CCTTATGTGAATTCAAACATGGAGGTTGTATGGGCTACAAATTACAACTACCATGAATTGAAACTAATCATGCGTGTCCC AAAAATGATTGTTCAAATCTAACGCATCTCCTCATGTTTCTTTGATAACTATGTTTAACTCTATATATATTTCTGTATTT ATTGTACGGACTGCGGTTGAGTGTTTGGCTTGCAGTTTTGCATTTGATGACTGATACACTTGCAGGGAGATAAGTTTAAG GAAGCTGAAGAAGTGTTTGAGACTCTACTGGATGACGAAAAGTCACCTTTGAAACCAGACCAAAAGATGTTTAACATGAT GATTTATATGTATAAGAAGGCTGGAAGTTATGATAAGGCTCGCAAGACATTTGCACTGATGGCTGAACGAGGAATCGAAC AATCTACAGTTACATATAATAGCTTGATGTCATTTGAAACAAATTACAAGGAAGTTTCAAACATATATGATCAGGTATTT ATCTATTTTTTGTGTAATCTGTGGTAGATTTGGATTCTTTCATTTCATCTCGGTTATGCTTATTTCACAGACAACACCTT TTCCCCTGAAAACTGCATATATCCTGTAAAGCTGTAACATCATATTATTTTCAAAGGAAGAAAAAACTGGTTTAAACCTA ACTCATGTAAAACTAGATGGTCTAGTTATACTCTATATGAACAGCAGCAGGTTTGGTTTCATGGAGTATTTCTGTGAAAT TCTAAATCTGCCTCTTTCATATAAGATAGTCGGTGATTCACAAGTACATAATCAGAACAGTTTTACGTCATTGCAAATTC CTCCAAGTGATTCGAATTGTGTTATGATCTCGTAATCTTGTTCCATGCTAACTCAATCAAAATTTTCTGAAAAATATTAA ATATATATGATTGTTGAAATTTAGTCCTTATAGACAAGAGACACAAATACAGAAATACTGTCTGGAATTTCACACAGATA ATTATTTCCATTAGTTTTCGTCTTGTTTTTCTCTTCTCCCTTTAATTTCTTGTTTATAATTAATTCATCAGATTTTGAAG TGAATGCCTAAATTTTAGATGCAAAGAGCTGATCTCAGACCGGACGTTGTGAGCTATGCCTTACTCATTAATGCTTATGG GAAGGCCAGGAGGGAGGAAGAAGCATTAGCTGTATTTGAAGAAATGCTTGATGCCGGTGTCAGGTATATTGGAGAATAAA ATTATTACTGCATGGAATAATTTAGTGTATACATTTTTTAAAACAACTATCAGCACTTACCATACTTTGAAATGATAGTT CCATTAATAATGCAAATTTTCAAGTTTGCATCCCTGAAACCTAGAGGTTTCAAGTTTCATAATGCAAATTTTTAGCAGTC ATGTATTAAAAATCTTATCTTTGTAATAAACACTTTCAAAGTGAAACATCCTTCCACTTCAATATCAGTATGTCTTTGTG TTATTGTGAGTCGTTGAGATATTCAAATTCCTATCTTTATCAACCAGGCAAACTGGTTCTTCTGTGCCTATGTATATCAA TAGTTTTTCATTTAATAAGTTTTGATTGTGTGGGACTTTTTTATATAATCCCTGTTCTTTTCTTCTTCACAGACCAACTC GGAAGGCTTACAATATTTTACTTGATGCATTTTCTATATCGGGAATGGTAGAGCAGGCTCGGACTGTGTTTAAAAGCATG AGAAGGGATAGGTAAATTATGTTTTCTTTCTATCAGTAGTTTTTATATTTTAATGTTGGAAGCTTCTGCCATTTTTATTA GAGCACCACATTGTATCATTGTACTTTTTTCCATGGCTGCAGATTCATGCCAGATCTATGCTCATACACTACCATGTTAT CAGCTTATGTCAATGCACCTGACATGGAGGGTGCTGAGAAGTTTTTCAAAAGATTGATACAAGATGGTTTAGAGCCTAAT GTGGTCACTTATGGAGCCTTAATTAAAGGATATGCTAAGGCAAACGATCTTGAAAAGGTTGCGGAGAAGTATGAGGAAAT GCTTGGGCGTGATATCAAGCCCAATCAGACAATTTTAACCACCATCATGGATGCACATGGAAAAAATGGAGACTTTGGCA GTGCTGTTCATTGGTTCAAGGAAATGGAATCAACTGGGTTTCCTCCTGATCAGAAAGCCAAAAACGTCCTTCTATCTTTG GCAACAACAGATGAAGAAAAAGACGAGGCAAATGAACTTGTGGGGCAACATTTCATTGAGAATAACAATTTACCTAAAGT TAATGGTGCTGCTAGATTTGATGATGATGATGATGACGACGACGGCGGTGATGATGCAGAACAAAATAATGATGAAGATT TTGATGTCCAGCTAGACAGTGCTTATGATGAAGAATTTCAAGTCGTCTAAGATATAGACCTAAAACAATTTTGTATGCTT GCAAATTTAGGTTCTTTGTATTTTGTTGTACAACTATATTATATCAGCACGCAATCAAAATTATTTATTTTTGCCATGAT AATTACAACATCAGAAATGCTGGAGGAATTCAGCTGTCAAAAGTGTATTTTCAATGTGAAAAATCAGAAAATGCCTTTTT TTATGTCTCATTATCCATTTATTTTCATGGTATACTAATAGCTTGTTGGATTGGTG
CDS sequence (LotjaGi5g1v0352700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGCAGTCTCATTTCCAAGACACACTGCCATTTTGGACAGCTTTCGTTGCCACCACTGCACAAAGGGAAATTGGAATA TGGAATTGTGACGGTGAAGATGCGAAGGAGGAGATTGGAGGTGGTGTGTAAGGGTATGTTGACACCCAGGAAGTTCATGC AGAGGAGGAGGAAAAACACTGTATTCAAGGATGCTGCAGATGAAGCTGAGAAGAAGAATTGGTGGAAACTCATGGAACAA ATTGACCAAGCAGGTTCTGCTGTTTCAGTTCTCTCTGATGAGAAGTTGAAAAACCAGACTATTCCTAAAGACCTTGTTAT TGGTACCTTGGTTAGATTTAAACAGCTCAAAAAGTGGAACCTTGTCATTGAGATTCTGGAATGGCTTCGGAATCAAAGCT GGTGGGATTTTGGTAAGATGGATTTCATAATGCTTATCACTGGTTATGGAAAGCTGGGAGACTTCAATGGTGCTGAGAAG GTCTTAGCCTTGATGAATAAGAATGGTTATCCACCGAATGTGGTGTCTCAGACTTCACTCATGGAAGCATATGGAAAAGG AGGCAGATATAATAATGCTGAAGCGATATTTCGCAGGATGCAGAAATTTGGCCCTGAACCTTCGGCTGTAACTTATCAGT TAATACTTAAAACATTTGTTCAGGGAGATAAGTTTAAGGAAGCTGAAGAAGTGTTTGAGACTCTACTGGATGACGAAAAG TCACCTTTGAAACCAGACCAAAAGATGTTTAACATGATGATTTATATGTATAAGAAGGCTGGAAGTTATGATAAGGCTCG CAAGACATTTGCACTGATGGCTGAACGAGGAATCGAACAATCTACAGTTACATATAATAGCTTGATGTCATTTGAAACAA ATTACAAGGAAGTTTCAAACATATATGATCAGATGCAAAGAGCTGATCTCAGACCGGACGTTGTGAGCTATGCCTTACTC ATTAATGCTTATGGGAAGGCCAGGAGGGAGGAAGAAGCATTAGCTGTATTTGAAGAAATGCTTGATGCCGGTGTCAGACC AACTCGGAAGGCTTACAATATTTTACTTGATGCATTTTCTATATCGGGAATGGTAGAGCAGGCTCGGACTGTGTTTAAAA GCATGAGAAGGGATAGATTCATGCCAGATCTATGCTCATACACTACCATGTTATCAGCTTATGTCAATGCACCTGACATG GAGGGTGCTGAGAAGTTTTTCAAAAGATTGATACAAGATGGTTTAGAGCCTAATGTGGTCACTTATGGAGCCTTAATTAA AGGATATGCTAAGGCAAACGATCTTGAAAAGGTTGCGGAGAAGTATGAGGAAATGCTTGGGCGTGATATCAAGCCCAATC AGACAATTTTAACCACCATCATGGATGCACATGGAAAAAATGGAGACTTTGGCAGTGCTGTTCATTGGTTCAAGGAAATG GAATCAACTGGGTTTCCTCCTGATCAGAAAGCCAAAAACGTCCTTCTATCTTTGGCAACAACAGATGAAGAAAAAGACGA GGCAAATGAACTTGTGGGGCAACATTTCATTGAGAATAACAATTTACCTAAAGTTAATGGTGCTGCTAGATTTGATGATG ATGATGATGACGACGACGGCGGTGATGATGCAGAACAAAATAATGATGAAGATTTTGATGTCCAGCTAGACAGTGCTTAT GATGAAGAATTTCAAGTCGTCTAA
Protein sequence (LotjaGi5g1v0352700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCSLISKTHCHFGQLSLPPLHKGKLEYGIVTVKMRRRRLEVVCKGMLTPRKFMQRRRKNTVFKDAADEAEKKNWWKLMEQ IDQAGSAVSVLSDEKLKNQTIPKDLVIGTLVRFKQLKKWNLVIEILEWLRNQSWWDFGKMDFIMLITGYGKLGDFNGAEK VLALMNKNGYPPNVVSQTSLMEAYGKGGRYNNAEAIFRRMQKFGPEPSAVTYQLILKTFVQGDKFKEAEEVFETLLDDEK SPLKPDQKMFNMMIYMYKKAGSYDKARKTFALMAERGIEQSTVTYNSLMSFETNYKEVSNIYDQMQRADLRPDVVSYALL INAYGKARREEEALAVFEEMLDAGVRPTRKAYNILLDAFSISGMVEQARTVFKSMRRDRFMPDLCSYTTMLSAYVNAPDM EGAEKFFKRLIQDGLEPNVVTYGALIKGYAKANDLEKVAEKYEEMLGRDIKPNQTILTTIMDAHGKNGDFGSAVHWFKEM ESTGFPPDQKAKNVLLSLATTDEEKDEANELVGQHFIENNNLPKVNGAARFDDDDDDDDGGDDAEQNNDEDFDVQLDSAY DEEFQVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 109 | 293 | 185 | 8.0E-34 | ||
| ProSiteProfiles | 138 | 172 | 35 | 9.153 | ||
| PANTHER | 140 | 288 | 149 | 4.9E-85 | – | |
| TIGRFAM | 144 | 174 | 31 | 2.6E-5 | ||
| Pfam | 144 | 169 | 26 | 0.0088 | ||
| Pfam | 172 | 219 | 48 | 5.5E-8 | ||
| ProSiteProfiles | 173 | 207 | 35 | 11.148 | ||
| TIGRFAM | 176 | 208 | 33 | 1.1E-5 | ||
| ProSiteProfiles | 208 | 242 | 35 | 8.89 | ||
| SUPERFAMILY | 223 | 484 | 262 | 2.43E-10 | – | |
| Pfam | 242 | 290 | 49 | 3.8E-6 | ||
| ProSiteProfiles | 246 | 280 | 35 | 10.194 | ||
| TIGRFAM | 249 | 279 | 31 | 6.1E-6 | ||
| PANTHER | 254 | 512 | 259 | 4.9E-85 | – | |
| Gene3D | 294 | 398 | 105 | 3.1E-31 | ||
| Pfam | 301 | 359 | 59 | 3.4E-12 | ||
| ProSiteProfiles | 313 | 347 | 35 | 13.285 | ||
| TIGRFAM | 315 | 348 | 34 | 7.8E-9 | ||
| ProSiteProfiles | 348 | 382 | 35 | 10.643 | ||
| TIGRFAM | 351 | 383 | 33 | 9.1E-7 | ||
| Pfam | 382 | 431 | 50 | 2.0E-11 | ||
| ProSiteProfiles | 383 | 417 | 35 | 10.918 | ||
| TIGRFAM | 386 | 419 | 34 | 1.2E-5 | ||
| Gene3D | 399 | 518 | 120 | 3.1E-25 | ||
| ProSiteProfiles | 418 | 452 | 35 | 11.751 | ||
| TIGRFAM | 420 | 453 | 34 | 1.3E-7 | ||
| ProSiteProfiles | 453 | 487 | 35 | 10.49 | ||
| TIGRFAM | 458 | 488 | 31 | 3.7E-7 | ||
| Pfam | 458 | 484 | 27 | 5.1E-4 | ||
| MobiDBLite | 523 | 557 | 35 | - | – | |
| MobiDBLite | 532 | 557 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0352700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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