Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0355300 |
| Transcript ID | LotjaGi5g1v0355300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | G-patch domain containing protein, expressed; TAIR: AT5G08535.1 D111/G-patch domain-containing protein; Swiss-Prot: sp|Q6C233|SQS1_YARLI Protein SQS1; TrEMBL-Plants: tr|A0A0D6DQF0|A0A0D6DQF0_LUPAN Similar to uncharacterized protein; Found in the gene: LotjaGi5g1v0355300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67061994..67063912) extracted from Lotus japonicus Gifu genome v1.2.
TAGAAGAGAAGAGAAAAGAAGGACGAAGAAAAAACGCGAGAACGTTGTTCCCCTAAACTCGGTTAGCGATGTGTTCCAAA TTGATAAATGTTGTGTAGTTCAATTCGTAGCTAGTTTCTTAGTTTTTATTCAGTTTTCGTTGTAAACGTGTAATGGAAAA GGGGGTTTATGGTGAATTTGGGAATTTGAGTGGTTTGATTTGATTGTATTCTCTTTCTCCAGTGTGCTCAATGGAAGACA TGAGTGGTGGTTCAGCAACAGCAACAGCAACAGCAATCAACTCTTCCAATATAGGGTTTCAGGTACCTCTCTTTCTTTTC CCTGTCATTCCTTTTTTCCTCCTTCTCCTTCATGTAAATATAATTGGGCATGTTGTTTTCTGCAGCTATTGAAGAAGCAA GGTTGGAAAGAAGGGACTGGTCTTGGGATATCTGAGCAGGTTTTGTTTCTTACTCTCTTTTCTTCTTCGTGACTTGAAAC ATTTTCTTACTTTATGTCATTCTTTTTCTTCATCATTTAAATTGAGTAAAGAGGGAAATTAGTTTCAGAATGATATGACA TCACTGAATAGAAATTATGTTTGAGGTCTTGGAATGTTTATTTTGTTGGTGAAATTAGTCCTTATAATCAGCGACCGATT TGACCAAACAAATACATACTCTGACTAATTTAATCAGTGAAATGCTCCTGCTTGTGTACTTGTCTTATTGCCATAATTGT AGTCAATAATCCTGTGTGTGAAATTTTCTTACATTGATTCTGATAAATGACTTCATGATGGAAACAGGGTAGACTAGAAC CCGTGGAAACTCGTGTGAAGAATAACAAGCGAGGTTTGGGGGCGGACAAAGTGAAGAAAATGGCCGTGAAGTCTGATGAT AGTGATGCCTCTAAAGGGAACAAGCAGCAGGTAACTTTTTGCTCCTAGATCGAATTTTCAAGTTTTATTCCATTCAATTT GATGGGGGAGTTTTAGAAATATGATATAGTTTTCAGTAATGAGTAAACTCTGATGAATTGAGTAATTAGTTTCTTTAGTG CAACCAAAATATTGGTTATTTGTATCTTTATGTAACATACTAGTACTATAAAATAATTGGAGTATTCAGTCAGCTTTTGC ATCTAACTATTCTCAGTCATTACTAATTAGTAAAATACTGCATTCCCTTTGTCTTGCATCACTCCATCTAGTATCCCCTT TTGTTTTTCAACATTTGTCATTCTGATGGTACTCGGAATATATTTTTAGAATTTGTACATTTGAGTTCTACTTAAGTAGT ATTTTCTGTAGTTTTTTATTAGTCTCTTCAAAGTAAAATGAAATGGTAAAAACTACAAAATTAGAAAATTGGAGGAAGGG ATAGAAGAACATAATAATTTATTCTCTGAGTAGCAAACTTTGTGTATTGTGCCAGAGTGTAGAATCAGTAGCATAGGATC ACACTTACCAGGAACCAGGGTTGTCAATAATGTATTGTAGCGCATATTATCCCTCTCTCTTCTTTAAACAGTATAATATT TCCTGCTTTTCATTGATGTCAATTGATTTCAGGAAAACTCGTCTCAAAAGAAAAAAACCAAAGCACTCTCTAAACGGATG AGAAAGATGCAGGAGTATGAAAAGCAGATGGAGGAGAAGGAATTTGAGCGCGCATTCTTTAGAGAGTTCTGGCCAGAAAA TGTGTAAAGGAGAATTTGGCGGTTCGTGTCATTATGTGTATCAGCATAGTTAGAAAAGGCTGTTGCGAACAGAGAGGATT TCAACATAGCTTCTTTTTCATGTGTAAATAATCAACTCATTTTCTTTATTCTTTTGTACAACAGAGAAATATGTAATTGC TAAGGGAATGTCAAGGGATGTCATCGCCCAAAAAATGATTCTTTTACATAATCGTTATCTTGGCCTCCCTGGACAATGT
CDS sequence (LotjaGi5g1v0355300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGACATGAGTGGTGGTTCAGCAACAGCAACAGCAACAGCAATCAACTCTTCCAATATAGGGTTTCAGCTATTGAA GAAGCAAGGTTGGAAAGAAGGGACTGGTCTTGGGATATCTGAGCAGGGTAGACTAGAACCCGTGGAAACTCGTGTGAAGA ATAACAAGCGAGGTTTGGGGGCGGACAAAGTGAAGAAAATGGCCGTGAAGTCTGATGATAGTGATGCCTCTAAAGGGAAC AAGCAGCAGGAAAACTCGTCTCAAAAGAAAAAAACCAAAGCACTCTCTAAACGGATGAGAAAGATGCAGGAGTATGAAAA GCAGATGGAGGAGAAGGAATTTGAGCGCGCATTCTTTAGAGAGTTCTGGCCAGAAAATGTGTAA
Protein sequence (LotjaGi5g1v0355300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDMSGGSATATATAINSSNIGFQLLKKQGWKEGTGLGISEQGRLEPVETRVKNNKRGLGADKVKKMAVKSDDSDASKGN KQQENSSQKKKTKALSKRMRKMQEYEKQMEEKEFERAFFREFWPENV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 124 | 115 | 4.2E-44 | ||
| SMART | 16 | 62 | 47 | 3.5E-18 | ||
| ProSiteProfiles | 18 | 64 | 47 | 16.921 | ||
| Pfam | 19 | 61 | 43 | 3.6E-18 | ||
| MobiDBLite | 34 | 104 | 71 | - | – | |
| MobiDBLite | 46 | 91 | 46 | - | – | |
| Coils | 95 | 115 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi5g1v0355300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…