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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0358200 |
| Transcript ID | LotjaGi5g1v0358200.4 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Splicing factor 3B subunit-like protein; TAIR: AT3G55200.1 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein; Swiss-Prot: sp|A0JN52|SF3B3_BOVIN Splicing factor 3B subunit 3; TrEMBL-Plants: tr|V7BAV6|V7BAV6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0358200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67286048..67290293) extracted from Lotus japonicus Gifu genome v1.2.
ATGTATCTATACAGTCTCACCCTACAGCGACCCACCGGCATCGTCTGCGCCATCAACGGCAACTTCTCCGGCGGCAAGGT ACAAGAAATCGCCGTCGCCAGAGGCAAGGTTCTCGATCTCCTCCGCCCCGACGACAACGGCAGGATCCAAACCATCCTCT CCGTTGAGGTCTTCGGCGCCATCAGGTCCCTCGCCCAGTTCCGCCTCACCGGCGCTCAGAAGGACTACATCGTCGTCGGT TCCGACTCCGGCAGAATCGTCATCCTCGACTACAACAAGGAGAAGAATGTCTTCGACAAAGTCCACCAGGAAACGTTCGG TAAATCTGGCTGCCGACGCATCGTCCCGGGGCAGTACCTCGCCGTGGATCCCAAAGGCAGGGCCGTCATGATCGGTGCTT GTGAGAAGCAGAAGCTGGTTTATGTGCTGAATAGGGATACTGCTGCTAGGTTAACGATTTCTTCCCCTTTAGAAGCTCAT AAGTCTCATACTTTAGTTTTTTCCATTTGTGGGGTTGATTGTGGTTTTGAGAACCCCATTTTTGCTGCTATAGAGTTGGA TTACTCTGAGGCTGATCAGGATTCTACTGGTATGGCTGCTTCTGAAGCTCAGAAGCATTTGACTTTCTATGAGCTTGATT TGGGTCTCAACCATGTTTCTAGGAAGTGGTCTGATCAGGTTGATAATGGTGCTAATTTGCTTGTTACTGTTCCTGGTGGT GCTGATGGCCCTAGTGGGGTGCTTGTTTGTGCTGAGAATTTTGTTATTTATAAGAATCAGGGGCATCCTGATGTTAGGGC TGTGATTCCTCGACGTGCTGATTTGCCGGCTGAGCGTGGGGTTCTTATTGTGTCGGCTGCCATGCATAAGCTCAAGACCA TGTTCTTCTTCCTGCTGCAGACTGAGTATGGGGACATTTTTAAGGTCACCTTGGATAATGATGGTGACCATGTATCTGAG TTGAAGATTAAGTATTTTGATACTATTCCCGTTACGGCTTCCATGTGTGTGCTGAAGTCAGGGTTCTTGTTTGCAGCCTC TGAGTTTGGAAACCATGCTTTGTATCAGTTTAAGGCAATAGGGGATGATGATGATGTGGAGGCTTCGTCTGCTACGCTGA TGGAAACTGAAGAAGGTTTTCAGCCGGTGTTTTTCCAGCCCAGAAGGCTGAAGAACCTTGTTAGGATTGATCAGGTTGAG AGTTTAATGCCAGTTATGGATATGAAGGTCAGTAACCTCTTTGAAGAGGAAACTCCTCAGATTTTTACACTCTGTGGCCG TGGTCCTCGATCCACTCTGAGGATTTTGAGAACTGGTTTAGCTGTTAGTGAGATGGCAGTTTCCAGGCTTCCTGGTGTAC CTAGTGCTGTTTGGACTGTTAAGAGGACTGTGTTTGATGAGTTTGATGTGTATATCGTTGTTTCGTTCACAAATGCCACG CTTGTGCTTTCCATTGGTGAGACAGTTGAAGAAGTTGATGACAGTGGATTTCTTGACACTACTCCCTCCCTCGCCGTGTC TTTGATAGGTGAAGATTCTCTGATGCAGGTCCACCCGAATGGTATTAGGCACATTAGGTCGGATAGGCGTGTGAATGAGT GGAGAACTCCTGGAAAGAGGACGATTTCAAAAGTAGGATCAAACAGACTTCAAGTGGTTATTGCACTGAGTGGAGGGGAG CTTATCTATTTTGAAGTGGATGTAACTGGTACTGGTCAGTTGTTGGAGGTGGACAAGCATGAAATGTCTGGAGATGTTGC TTGTTTGGACATTGCTCCAGTGCCTGAAGGCAGGCAAAGGTCTCGTTTTCTTGCAGTTGGCTCATATGACAAGACAATTC GAATCTTATCACTGGATCCCGATGATTGTATGCAGACACTGAGTGTACAAGGCGTTTCTTCACCTCCAGAGTCTCTACTT TTCCTCGAAGTCCAAGCATCTGTTGGTGGTGAGGATGGTGCAGATCATCCTGCTAGCCTTTTCCTGAACGCTGGTTTACA GAATGGTGTCTTATTTAGGACTGTGGTGGATATGGTTACAGGTCAGCTTTCTGATTCTCGTTCCAGATTCTTAGGATTGA GAGCCCCAAAACTTTTTCCCATTGTTGTAAGAGGGAAGCGTGCTATGCTTTGCTTATCAAGTCGACCTTGGCTAGGTTAT ATTCACCAAGGACATTTCCTTTTAACACCCCTTTCATATGAAACCCTTGAATATGCTGCCTCTTTTTCATCTGACCAATG TGTGGAAGGTGTAGTTTCTGTTGCTGGTGAGGCATTGAGAATTTTTACCATTGAAAGATTAGGAGAAACATTCAATGAGA CTGTAATTCCGCTAAGATACACACCAAGGAAATTTGTGCTACAACCCAAACGGAAGCTTTTGGTGATGATTGAGAGCGAT CAAGGAGCTTTTACGGCAGAAGAGCGTGAAGCTGCAAGGAGAGAATGTTTTGAGGCTGCTCAAGCTGGGGAAAATGGGAA TGGAAATGCAGACCAAATGGAGAATGGTGGGGAGGATGAGGATAGAGATGATCCGCTCTCGGATGAGCATTATGGTTATC CTAAAGCTGAATCAGACAAGTGGGTTTCCTGCATCAGAGTTCTTGATCCTAGGTCAGGAACTACAACCTGTCTCTTGGAG CTTCAGGAGAATGAGGCCGCATTCAGCATATGCACAGTAAATTTCCATGATAAGGAATATGGAACTCTTTTAGCTGTTGG CACTGCAAAGGGACTGCAATTTTTGCCTAAAAAGAGTTTAGCTGCCGGATTTATTCATATATATAGGTTTGTAGACGAGG GAAGATCTCTTGAACTTCTTCACAAAACCCAGGTTGAAGGTGTTCCTCTTGCTCTATGTCAGTTTCAAGGAAGATTACTT GCAGGAATAGGACCTGTGCTCAGGCTATATGATCTAGGAAAAAGGAGATTATTAAGAAAATGTGAGAATAAGCTATTCCC AAACACAATTGTCTCTATTCAGACATATCGTGATCGAATTTATGTTGGTGACATCCAAGAGGTATGTTTCTGTTATATAT CTTTGTTATATATCTTTATCTAATGAACAACTGGGTATTTGAGTTAGGCATTCTGAAATAGTTTTTTTTCGTGACTTCTG TATTTTGCTGGTAGCATTTGATTTTGCATTGATTTCTGACATTAATTCATGTGTGTCTAGCAAGTGTGACTATTTTAACT TTTACTAATTGGGTTTTAACTTGAATGCTTCTGGAGGAATTATTCAATTTTAGAATGACTTGACTAAGGCTTTCGGAGGT GATTTAGTATACTCTTAAGTTTGCAAATAGAAACCATGCTTATTCCAGATTCATTGTCCTTCTGCTCTCGAATTAATAAA ATGTTTAGCTAATTGTGCTGTGTATTCTCTCCAGTCTTTCCATTATTGCAAGTATAGATGGGATGAAAACCAACTTTACA TATTTGCTGATGATTGCGTTCCAAGATGGCTTACTGCTTCATACCACATAGATTTCGACACCATGGCTGGTGCAGACAAG TTTGGAAATATCTATTTTGTGCGGTTGCCGCAGGATGTTTCTGATGAGATAGAAGAAGATCCTACTGGTGGGAGGATCAA GTGGGAGCAGGGAAAGCTGAATGGAGCTCCCAATAAGATGGAAGAAATTGTACAATTTAATGTTGGTGATGTGGTCACAA GCTTGCAAAAGGCATCTCTTATACCTGGTGGTGGAGAGTGTATTGTATATGGAACAATTATGGGAAGTATTGGGGCATTG CATGCTTTTACTTCACGTGATGATGTTGATTTCTTTTCTCATTTGGAGATGCATCTGAGGCAGGACTATCCACCTTTGTG TGGAAGAGATCACATGGCTTATAGATCTGCCTATTTTCCCGTTAAGGTACGCCTAATCAATATGCTGTTTATTCCTTCTA GTTTAGTTGTTGCAAAGCATTATTTGTCCTCCATAAGCATCCTTCCTGTTATATTGTGTCTGTCGCAGGCAAGGGTTTTA CTCTTCTGCCTTCGACAAAATTGCAGATAGATCCAAAATGTTTTATTTGTTCATTGATTTTCTAGCCATAGCATTAAATT TTAACAAATTTCTGAGGCCTGTTTGTAGGATGTGATTGATGGTGATCTATGCGAGCAATTCCCAACATTGCCAATGGATT TGCAGAGAAAAATTGCTGATGAATTAGACAGAACTCCGGCAGAGATACTGAGAAAACTAGAGGAAGTGCGAAATAAGATT ATTTAA
CDS sequence (LotjaGi5g1v0358200.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATCTATACAGTCTCACCCTACAGCGACCCACCGGCATCGTCTGCGCCATCAACGGCAACTTCTCCGGCGGCAAGGT ACAAGAAATCGCCGTCGCCAGAGGCAAGGTTCTCGATCTCCTCCGCCCCGACGACAACGGCAGGATCCAAACCATCCTCT CCGTTGAGGTCTTCGGCGCCATCAGGTCCCTCGCCCAGTTCCGCCTCACCGGCGCTCAGAAGGACTACATCGTCGTCGGT TCCGACTCCGGCAGAATCGTCATCCTCGACTACAACAAGGAGAAGAATGTCTTCGACAAAGTCCACCAGGAAACGTTCGG TAAATCTGGCTGCCGACGCATCGTCCCGGGGCAGTACCTCGCCGTGGATCCCAAAGGCAGGGCCGTCATGATCGGTGCTT GTGAGAAGCAGAAGCTGGTTTATGTGCTGAATAGGGATACTGCTGCTAGGTTAACGATTTCTTCCCCTTTAGAAGCTCAT AAGTCTCATACTTTAGTTTTTTCCATTTGTGGGGTTGATTGTGGTTTTGAGAACCCCATTTTTGCTGCTATAGAGTTGGA TTACTCTGAGGCTGATCAGGATTCTACTGGTATGGCTGCTTCTGAAGCTCAGAAGCATTTGACTTTCTATGAGCTTGATT TGGGTCTCAACCATGTTTCTAGGAAGTGGTCTGATCAGGTTGATAATGGTGCTAATTTGCTTGTTACTGTTCCTGGTGGT GCTGATGGCCCTAGTGGGGTGCTTGTTTGTGCTGAGAATTTTGTTATTTATAAGAATCAGGGGCATCCTGATGTTAGGGC TGTGATTCCTCGACGTGCTGATTTGCCGGCTGAGCGTGGGGTTCTTATTGTGTCGGCTGCCATGCATAAGCTCAAGACCA TGTTCTTCTTCCTGCTGCAGACTGAGTATGGGGACATTTTTAAGGTCACCTTGGATAATGATGGTGACCATGTATCTGAG TTGAAGATTAAGTATTTTGATACTATTCCCGTTACGGCTTCCATGTGTGTGCTGAAGTCAGGGTTCTTGTTTGCAGCCTC TGAGTTTGGAAACCATGCTTTGTATCAGTTTAAGGCAATAGGGGATGATGATGATGTGGAGGCTTCGTCTGCTACGCTGA TGGAAACTGAAGAAGGTTTTCAGCCGGTGTTTTTCCAGCCCAGAAGGCTGAAGAACCTTGTTAGGATTGATCAGGTTGAG AGTTTAATGCCAGTTATGGATATGAAGGTCAGTAACCTCTTTGAAGAGGAAACTCCTCAGATTTTTACACTCTGTGGCCG TGGTCCTCGATCCACTCTGAGGATTTTGAGAACTGGTTTAGCTGTTAGTGAGATGGCAGTTTCCAGGCTTCCTGGTGTAC CTAGTGCTGTTTGGACTGTTAAGAGGACTGTGTTTGATGAGTTTGATGTGTATATCGTTGTTTCGTTCACAAATGCCACG CTTGTGCTTTCCATTGGTGAGACAGTTGAAGAAGTTGATGACAGTGGATTTCTTGACACTACTCCCTCCCTCGCCGTGTC TTTGATAGGTGAAGATTCTCTGATGCAGGTCCACCCGAATGGTATTAGGCACATTAGGTCGGATAGGCGTGTGAATGAGT GGAGAACTCCTGGAAAGAGGACGATTTCAAAAGTAGGATCAAACAGACTTCAAGTGGTTATTGCACTGAGTGGAGGGGAG CTTATCTATTTTGAAGTGGATGTAACTGGTACTGGTCAGTTGTTGGAGGTGGACAAGCATGAAATGTCTGGAGATGTTGC TTGTTTGGACATTGCTCCAGTGCCTGAAGGCAGGCAAAGGTCTCGTTTTCTTGCAGTTGGCTCATATGACAAGACAATTC GAATCTTATCACTGGATCCCGATGATTGTATGCAGACACTGAGTGTACAAGGCGTTTCTTCACCTCCAGAGTCTCTACTT TTCCTCGAAGTCCAAGCATCTGTTGGTGGTGAGGATGGTGCAGATCATCCTGCTAGCCTTTTCCTGAACGCTGGTTTACA GAATGGTGTCTTATTTAGGACTGTGGTGGATATGGTTACAGGTCAGCTTTCTGATTCTCGTTCCAGATTCTTAGGATTGA GAGCCCCAAAACTTTTTCCCATTGTTGTAAGAGGGAAGCGTGCTATGCTTTGCTTATCAAGTCGACCTTGGCTAGGTTAT ATTCACCAAGGACATTTCCTTTTAACACCCCTTTCATATGAAACCCTTGAATATGCTGCCTCTTTTTCATCTGACCAATG TGTGGAAGGTGTAGTTTCTGTTGCTGGTGAGGCATTGAGAATTTTTACCATTGAAAGATTAGGAGAAACATTCAATGAGA CTGTAATTCCGCTAAGATACACACCAAGGAAATTTGTGCTACAACCCAAACGGAAGCTTTTGGTGATGATTGAGAGCGAT CAAGGAGCTTTTACGGCAGAAGAGCGTGAAGCTGCAAGGAGAGAATGTTTTGAGGCTGCTCAAGCTGGGGAAAATGGGAA TGGAAATGCAGACCAAATGGAGAATGGTGGGGAGGATGAGGATAGAGATGATCCGCTCTCGGATGAGCATTATGGTTATC CTAAAGCTGAATCAGACAAGTGGGTTTCCTGCATCAGAGTTCTTGATCCTAGGTCAGGAACTACAACCTGTCTCTTGGAG CTTCAGGAGAATGAGGCCGCATTCAGCATATGCACAGTAAATTTCCATGATAAGGAATATGGAACTCTTTTAGCTGTTGG CACTGCAAAGGGACTGCAATTTTTGCCTAAAAAGAGTTTAGCTGCCGGATTTATTCATATATATAGGTTTGTAGACGAGG GAAGATCTCTTGAACTTCTTCACAAAACCCAGGTTGAAGGTGTTCCTCTTGCTCTATGTCAGTTTCAAGGAAGATTACTT GCAGGAATAGGACCTGTGCTCAGGCTATATGATCTAGGAAAAAGGAGATTATTAAGAAAATGTGAGAATAAGCTATTCCC AAACACAATTGTCTCTATTCAGACATATCGTGATCGAATTTATGTTGGTGACATCCAAGAGTCTTTCCATTATTGCAAGT ATAGATGGGATGAAAACCAACTTTACATATTTGCTGATGATTGCGTTCCAAGATGGCTTACTGCTTCATACCACATAGAT TTCGACACCATGGCTGGTGCAGACAAGTTTGGAAATATCTATTTTGTGCGGTTGCCGCAGGATGTTTCTGATGAGATAGA AGAAGATCCTACTGGTGGGAGGATCAAGTGGGAGCAGGGAAAGCTGAATGGAGCTCCCAATAAGATGGAAGAAATTGTAC AATTTAATGTTGGTGATGTGGTCACAAGCTTGCAAAAGGCATCTCTTATACCTGGTGGTGGAGAGTGTATTGTATATGGA ACAATTATGGGAAGTATTGGGGCATTGCATGCTTTTACTTCACGTGATGATGTTGATTTCTTTTCTCATTTGGAGATGCA TCTGAGGCAGGACTATCCACCTTTGTGTGGAAGAGATCACATGGCTTATAGATCTGCCTATTTTCCCGTTAAGGATGTGA TTGATGGTGATCTATGCGAGCAATTCCCAACATTGCCAATGGATTTGCAGAGAAAAATTGCTGATGAATTAGACAGAACT CCGGCAGAGATACTGAGAAAACTAGAGGAAGTGCGAAATAAGATTATTTAA
Protein sequence (LotjaGi5g1v0358200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYLYSLTLQRPTGIVCAINGNFSGGKVQEIAVARGKVLDLLRPDDNGRIQTILSVEVFGAIRSLAQFRLTGAQKDYIVVG SDSGRIVILDYNKEKNVFDKVHQETFGKSGCRRIVPGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAH KSHTLVFSICGVDCGFENPIFAAIELDYSEADQDSTGMAASEAQKHLTFYELDLGLNHVSRKWSDQVDNGANLLVTVPGG ADGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAAMHKLKTMFFFLLQTEYGDIFKVTLDNDGDHVSE LKIKYFDTIPVTASMCVLKSGFLFAASEFGNHALYQFKAIGDDDDVEASSATLMETEEGFQPVFFQPRRLKNLVRIDQVE SLMPVMDMKVSNLFEEETPQIFTLCGRGPRSTLRILRTGLAVSEMAVSRLPGVPSAVWTVKRTVFDEFDVYIVVSFTNAT LVLSIGETVEEVDDSGFLDTTPSLAVSLIGEDSLMQVHPNGIRHIRSDRRVNEWRTPGKRTISKVGSNRLQVVIALSGGE LIYFEVDVTGTGQLLEVDKHEMSGDVACLDIAPVPEGRQRSRFLAVGSYDKTIRILSLDPDDCMQTLSVQGVSSPPESLL FLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRAPKLFPIVVRGKRAMLCLSSRPWLGY IHQGHFLLTPLSYETLEYAASFSSDQCVEGVVSVAGEALRIFTIERLGETFNETVIPLRYTPRKFVLQPKRKLLVMIESD QGAFTAEEREAARRECFEAAQAGENGNGNADQMENGGEDEDRDDPLSDEHYGYPKAESDKWVSCIRVLDPRSGTTTCLLE LQENEAAFSICTVNFHDKEYGTLLAVGTAKGLQFLPKKSLAAGFIHIYRFVDEGRSLELLHKTQVEGVPLALCQFQGRLL AGIGPVLRLYDLGKRRLLRKCENKLFPNTIVSIQTYRDRIYVGDIQESFHYCKYRWDENQLYIFADDCVPRWLTASYHID FDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGRIKWEQGKLNGAPNKMEEIVQFNVGDVVTSLQKASLIPGGGECIVYG TIMGSIGALHAFTSRDDVDFFSHLEMHLRQDYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRT PAEILRKLEEVRNKII
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 1208 | 1207 | 0.0 | – | |
| PANTHER | 2 | 1208 | 1207 | 0.0 | – | |
| Gene3D | 4 | 1067 | 1064 | 4.4E-217 | ||
| Gene3D | 13 | 401 | 389 | 4.4E-217 | ||
| SUPERFAMILY | 31 | 168 | 138 | 3.27E-5 | – | |
| Pfam | 75 | 591 | 517 | 2.3E-169 | – | |
| Gene3D | 440 | 769 | 330 | 4.4E-217 | ||
| SUPERFAMILY | 552 | 1058 | 507 | 2.75E-8 | ||
| MobiDBLite | 819 | 854 | 36 | - | – | |
| Pfam | 863 | 1182 | 320 | 2.8E-91 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi5g1v0358200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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