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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0361200 |
| Transcript ID | LotjaGi5g1v0361200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | High mobility group family protein; TAIR: AT1G04880.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9MAT6|HMG15_ARATH High mobility group B protein 15; TrEMBL-Plants: tr|K7LM49|K7LM49_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0361200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67526221..67531124) extracted from Lotus japonicus Gifu genome v1.2.
TGAGAAAAAAGGTCAAATCTTTGGTACTAAACAACCCTAAAAATCTCATCTTTTTTAGTTTTTACCCTGATACAGTGTCA GATTATAGAGAAAGATGAATAAAGTTATTGACTTGCTTTATGCTATAATCGTTTTGTATCATCCTATTATCCCTACCAAT GTCAGGGTTCAGTTATAGCCTATGGAGGGAGGGGCTAGAAAAGTAAGAAAGGGACTTTCTTTTGTGTCTTTATTGTCATA GCCTTAAAGGGTGTCTCTTGTTTAGCCACTGTTTGTTTCAAAGCCCTCTGTGCTGCTGCTGCTTTGATAACCTCGGTAAT CTGGAGGAATTCATGGCTATGTCACAGCTTTTCTCTGCCTTTTTCTTGGGCTGTGTGTGTATCTCCATTGTTACTGAGAG TTATTTCACCAACCTGGAGCTACTTGTGTATCTTATCAGGGTCCTGAGTTGTTTCAGTTCTGAATCTCCTGCTGCATGGT GATTTTATTGGTCTCTCTTTCTTTTTGTTTTTTGTTTTTTTCATGGCACAATTTTCTCTTCTTATCCTGTGAATTTGTCT GTTTCTTATCACTTGTTGTCTCTTCCAGTTTTTTTGGTTGTCTGCATGTAGGTGCCCATTTCATTCCTTTTTACCATTTT TCTTCTTCCTTTTTGTTATCTATTACTAATAGTATGTTTGAATCAACTTATTTTTCATCTGAATCAATTCTGATACATAG AAGCTTCTAATTTTGAGTTTAGAATCAATTGTGATGGTGGACTGGTTTACAAACATGTACTAGCTGGTTTTCTCTTCTTC CTGTATCTCTTTGTTTGATGTTTCTCTTCTTCCTTGTATCTCTTTGTTTGATTTTTCCCCTGATGCAATGATGGTAAAGG TTAAGGAGGTTGTGTTGTTGATGTTGGGGCAGGAAAATACTGAAGGCTGAACTTACTTAGTTGTTAATGGCATCAACATC TTGTATCAGTACGAGTCCATTACCCATGAATGAGGGAGCTCCGAGCTATATTGCATATCCTCCTCCTCTAACAGAATATA AGAATGTTGTTGACGATGCCACGCTCTTCTTGTCTACCTTGGAGAAGCTCCACGCTGATCTGGGTACCAGGTTGATGTAA GTTCCCTGATTATCTTTTTGACCATCAGCAAACATGTCTCTTTCTTTCCCCTTGAAAAGTGTTTGTGAGGGGTCAAAACT TTAAAGCTTCCATTCTTAAGAGAGGATGATAAGTTGGTGTAAAATGTTAGAGCATTTTTTGTTTTTTGTTTTTGCTATAG AACATACAAAGCTTGCAATGTCTGATTTCTGGCATCATGTTCTTTAGTTCTCTGTAACAATTTTAAGAATTGATACAGTT GCTGCTTGTTTACCTAATCAAGTCTTCATTGTCAGTGGGTTTAAGATAATTCTGTAATGATGGAAAGCATTCTGATGTTA CAATGTCAGCAAAGGATCCATGCTTATTTTGTTTTATGGTTGCATGTGGTTTCTAATCTATTTGGATCTATTTGGCTTAA ACCAATCCTTGTAGTTTTTGGAAATATTGCATCCTACCAATGCCTCACCTTTTCAGTTCCTTTTCTGGCGTTTAAATTTT TGTTGCAGGATTCCAGTTATTGGGGGAAGAGATGTAGATTTGCATCGCCTCTTTGTTGAAGTCACTTCTCGCGGAGGGTT AGCAAAAGTAAGTAGTGGTTATGATTCCCATCCTGCATTGTCATGTTCTGCAATTGTTGTGCTTGTGCATGCCTAATGCC TGGTCATCGATTGACTGAGAGAAGACAAATTTTCCAGTTTTTCCCTTTTTGATTATGTTGATCATAAAGTGGGACAAAAT TTTCATATTTAGTTCGTCTTCAATGTTTGCAACGTTGGTCACCTCCTCATTGTTGATGTGAGTTTTTCAAATTGTTGTGT GTATGAGGATATATTTTCCTCGTTAAAATTATGTGTCCTAAATCCTAATTATGGTATTTACAGATCATTGTATCGTATGG GTTTCAGGCATGTTTTCCCTGCTTGGGTGTTCTTCATTATGTTCTAGTTCAACATATCTTGTGTTTAATAATTTTTCTTG GAAGGTTTTTTTCATGACTAGGATAATAAAAAGCTAGTAGAACTCTCTCAGGATCTTTTGTCCTCCATACTTTTCGACCA ATATTATGTTGTTTGTCTTTTCTAAGTTCTAAGTGCAAGGTCTTGCCTAGAACAGAAATATGCTTGAATTTTTTGTGATA TCTAGGCAGAAAACTGTGAATATTTTTTTTTTACTCTTCTGAGTTCTGAATAACCTTTGGTTTTTCCTTGGTTGATCTGT CTTGCAGATGATTAAAGAGAGAAGATGGAAAGAAGTAACCTCAGTTTTCAATTTTCCATCAACAGCTACAAATGCATCTT TTGTGTTGCGGAAGTATTATACTTCATTGCTCTACCATTACGAACAAATTTACTATTTTAGAGCCCGGGAATGGGACCCT GCTGCTGCTGGTATGTTCATCGAAACTGCATTGCTGGTTTGAACTAATGTCAGGGCCTGTTCTAATATATGATATGGAAA TTTTACTTTGACAGAAGCTTTGCAGGGTCCATCAACCCCAGTTCCTTTTCCAAAGATTCAGAAATTGCAGCCTTCATCAG AAATTCAACCAGCTGTCTTTCAACAGTCAAATGTTAATGCTGCTAAACTCCCTGAAGGTATTTGGTTATTTTGTCAGCCG AAAATAAGATTAGTTTCTAATCACAGAAAAATGGAAAGAAAATAATTTTTATGATTGTGAGATTTATTAGTCTCAACTAT TATGAAGTCATGTATGGATTGGTGGAATGGGATGAAATGAAGGGGAATAAATTGGAATGCCATAGTTGCTGTTGTTTGGA TTGTTTGAAATAGGATATTACATTATGAAACCAGATGGAATCAGCATTCCCCCCTTTCCCAAATTTTCAGGGTATAGGAT GGAACCACTCCAATAAATTAGCAGATACAACTGAAACTTTACTCAGTTCCTCTGTAAAATATTCAAATTATGTATGTAAT TATATTTCATTTCATTTTATCTCATCCCTCTCTTTTCGGTTCTACACATCATTGGATATCCAACCATTGCATTTGCTGTA GTTTCATGAAATAGTTATGCTAGTCTTATACATACTGGAGAGAAGGTGCTGAGAAAGTGGACTGAGCAGACTTAGTTGAA TGGTCATTTATGACCTAAACATTTACGCACATGCCAGGTGCGAAAGGTCAATTTAAAGTAATACGGTTAAGCGGAAGTAG ATCTAGTATGCTATCTTCCTTCCTAGATTGATGTTCCATGATTACATGGGAATGATCATTGTGTCAATGTTCTTAGTTAG TTATACTTAACAATTTCTTGAATCACCTGTCTTATATACATTTACTCTTTGTGTATGATGACTGGAAACTATATGTTAAA CCTATTTTATCATCAGAAGGACATGGTTTCTACTTGTTCTGTGATATTACAAGCTTGCAAGGGCTGATACTAATTTCAAT ATATTGTTAATTTGTATGAAAGATTTCTGACTTGTATGTGAACCACTGTTAATAATATTATCTTTATATCGAAGTAGGTT TAATTTTTGTATGGATTTTTATGACCGATCAGAAATTCAATACCTATAAGTTTCATGACTGTTATTATTTTATAACTAAC TGTTTTATTCTCTTGTGCTCTCTTGCAATGGCAGCATCTTCGGCAGGGCATCCAGTCATTGGGGTCATTGATGGGAAATT TGACAGTGGGTATCTAGTAACTGTCACAATTGGATCTGAGAAACTCAAAGGTGTGCTATATCAAGCTTCACAGAACCCTG CATTGCCAGCATCTCATCAGAGTGCTTCGGCTCATGACAACAATGCATCTGCTTCATTGGGTGTCCATCGTCGCCGACGC AGGAAGTCATCAGAGATAAGAAAGAGTGATCCTGCTCTTCCAAAACCGAACAGAAGTGGATACAATTTCTTCTTTGCTGA ACAACATGCAAGACTAAAGCCACTTCACCAAGGGAAGGACAGAGAGATGAGTAGGACAATTGGTGACCTCTGGAACAAGT TACAAGAATCAGAAAAGACAGTAAGGATTTCTTAGGTTAATGTTGTCTTTCATAAGTTGGTTTTTTATATTGCTCATAAG TTCAAATGTGCATCATTCTGTTCTTGTGTATATTTGGTTATTTTAAGTTCATAATACTAATGTGTTAAGTTCCTCAAACA TTTAAGGTTTATCAAGAGAAGGCTATGAAGGATAAAGAGAGGTACCATGCTGAAATGGAGGATTATCATGAGAAACTGAA GATGGACCTAGTTATCAGTGACGCCGTGCCACTTCGACAACGATTTCCTGAACCGGATACAGACATGTTGGATGCTGACG CGAAATTGGATGATGCTCAGGCAGATTCTCTTCAAACTGTGGAGGAGAGCAGTTTTGGTGAAAGTGACTATGAAGTTGAT AAAGCTGGGGAGAGAGATTTCAATGTGGATTCATGAAAGTACCTGTTTGGGTTCAGAAGAGAAGTCATCTAAGGGGGGTT TATGAGCTTCAGCAGGTTCAGGAAGATGGATGAGAGATGAGGTTAACTGGCACTAATTTTCTGCACAGAGAAATATCTTG TGATTTTTTTTAGCTTTGTTGCTGTGAAAATTTGAAGTAGGATTGAGTTGCAGTGCTTAACTGCTTGTTCTTAATCAAAG TGCTTAACTGGGTTTTGTCATTTTAGTACTTAACTTCAGGTCTTCATTTCTGCTTCATGTTATTTTACATTTTAACATGC TGGATGCTAACTAATTAGGCCTTGAGGAGTAGTGGACACCGTAGGTGTAAAATGTTGTTATTCAAATTTAAAGTGATTAA GAAAAACTGTCCAAAAAATAGTCA
CDS sequence (LotjaGi5g1v0361200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCAACATCTTGTATCAGTACGAGTCCATTACCCATGAATGAGGGAGCTCCGAGCTATATTGCATATCCTCCTCC TCTAACAGAATATAAGAATGTTGTTGACGATGCCACGCTCTTCTTGTCTACCTTGGAGAAGCTCCACGCTGATCTGGGTA CCAGGTTGATGATTCCAGTTATTGGGGGAAGAGATGTAGATTTGCATCGCCTCTTTGTTGAAGTCACTTCTCGCGGAGGG TTAGCAAAAATGATTAAAGAGAGAAGATGGAAAGAAGTAACCTCAGTTTTCAATTTTCCATCAACAGCTACAAATGCATC TTTTGTGTTGCGGAAGTATTATACTTCATTGCTCTACCATTACGAACAAATTTACTATTTTAGAGCCCGGGAATGGGACC CTGCTGCTGCTGAAGCTTTGCAGGGTCCATCAACCCCAGTTCCTTTTCCAAAGATTCAGAAATTGCAGCCTTCATCAGAA ATTCAACCAGCTGTCTTTCAACAGTCAAATGTTAATGCTGCTAAACTCCCTGAAGCATCTTCGGCAGGGCATCCAGTCAT TGGGGTCATTGATGGGAAATTTGACAGTGGGTATCTAGTAACTGTCACAATTGGATCTGAGAAACTCAAAGGTGTGCTAT ATCAAGCTTCACAGAACCCTGCATTGCCAGCATCTCATCAGAGTGCTTCGGCTCATGACAACAATGCATCTGCTTCATTG GGTGTCCATCGTCGCCGACGCAGGAAGTCATCAGAGATAAGAAAGAGTGATCCTGCTCTTCCAAAACCGAACAGAAGTGG ATACAATTTCTTCTTTGCTGAACAACATGCAAGACTAAAGCCACTTCACCAAGGGAAGGACAGAGAGATGAGTAGGACAA TTGGTGACCTCTGGAACAAGTTACAAGAATCAGAAAAGACAGTTTATCAAGAGAAGGCTATGAAGGATAAAGAGAGGTAC CATGCTGAAATGGAGGATTATCATGAGAAACTGAAGATGGACCTAGTTATCAGTGACGCCGTGCCACTTCGACAACGATT TCCTGAACCGGATACAGACATGTTGGATGCTGACGCGAAATTGGATGATGCTCAGGCAGATTCTCTTCAAACTGTGGAGG AGAGCAGTTTTGGTGAAAGTGACTATGAAGTTGATAAAGCTGGGGAGAGAGATTTCAATGTGGATTCATGA
Protein sequence (LotjaGi5g1v0361200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASTSCISTSPLPMNEGAPSYIAYPPPLTEYKNVVDDATLFLSTLEKLHADLGTRLMIPVIGGRDVDLHRLFVEVTSRGG LAKMIKERRWKEVTSVFNFPSTATNASFVLRKYYTSLLYHYEQIYYFRAREWDPAAAEALQGPSTPVPFPKIQKLQPSSE IQPAVFQQSNVNAAKLPEASSAGHPVIGVIDGKFDSGYLVTVTIGSEKLKGVLYQASQNPALPASHQSASAHDNNASASL GVHRRRRRKSSEIRKSDPALPKPNRSGYNFFFAEQHARLKPLHQGKDREMSRTIGDLWNKLQESEKTVYQEKAMKDKERY HAEMEDYHEKLKMDLVISDAVPLRQRFPEPDTDMLDADAKLDDAQADSLQTVEESSFGESDYEVDKAGERDFNVDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 391 | 391 | 3.4E-157 | – | |
| PANTHER | 1 | 391 | 391 | 3.4E-157 | – | |
| Gene3D | 28 | 140 | 113 | 2.9E-25 | ||
| SMART | 32 | 122 | 91 | 7.3E-26 | – | |
| ProSiteProfiles | 35 | 126 | 92 | 26.216 | ||
| SMART | 36 | 127 | 92 | 2.0E-27 | ||
| SUPERFAMILY | 37 | 132 | 96 | 3.14E-28 | ||
| CDD | 37 | 122 | 86 | 8.15832E-48 | – | |
| Pfam | 40 | 122 | 83 | 5.9E-19 | ||
| MobiDBLite | 223 | 237 | 15 | - | – | |
| MobiDBLite | 223 | 267 | 45 | - | – | |
| Gene3D | 246 | 336 | 91 | 8.0E-20 | ||
| SUPERFAMILY | 250 | 332 | 83 | 9.16E-19 | ||
| SMART | 260 | 329 | 70 | 1.4E-15 | ||
| Pfam | 261 | 327 | 67 | 1.4E-12 | ||
| ProSiteProfiles | 261 | 328 | 68 | 14.187 | ||
| CDD | 261 | 325 | 65 | 2.79284E-19 | – | |
| Coils | 310 | 330 | 21 | - | – | |
| MobiDBLite | 366 | 396 | 31 | - | – | |
| MobiDBLite | 379 | 396 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi5g1v0361200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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