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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0362900 |
| Transcript ID | LotjaGi5g1v0362900.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT5G39350.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protein At5g39350; TrEMBL-Plants: tr|K7K4F6|K7K4F6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0362900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67713837..67715843) extracted from Lotus japonicus Gifu genome v1.2.
ATGAATGGGCCAATGAAGAGGATTGTGACCACTGCAACACAGTGCGAATCGCTCTTGCGAAAATTTTCAGCTTCGAATTC CCTTTCAGAAACCAAAAAGCTTCATGCTTTCATCCTCACCTCTGGCCTTCTCTCTTCCTCCACCAACCTTTCCTCTAAGC TTGCTACAACCTACGCACACTGCCACCATGCTTCCTATGCCTCCCACCTGTTTGATACATTGCCCCAACGGAGCTTGTTC TCGTGGAACACTATGATGAGGATGTATGTTCAAATGGGTCGCCCCCATGATGCCCTCAACTTGTTTGTTGAAATGATCCA CTCGGGTCTGACTCTGCCCGACAACTTCACGTACCCTATCATTATCAAGGCTTGCAGTGACCTGTCCTTCCTTGATATGG GTGTTGGGGTTCATGGGATGACATTTAAGGCTGGCTTTGATTTGGACACATTTGTTCAGAACTCTTTGCTGGCAATGTAT ATGAATGCTGGGGAGAAAGAACAAGCACAGCTGGTTTTTGACTTGATGAAGGAACAAACCGTCGTGTCTTGGAATACCAT GATTAATGGCTACTTTCGAAATAACCGTGCAGAGGAGGCGTTAAGGGTTTATAACAGAATGATGGATGCTGGTGTGGAGC CTGATTGTGCTACTGTTGTTTCAGTTTTGCCAGCTTGTGGACTTTTGAAGAATGTGGAGCTTGGGAGAGAGGTTCATGCG TTGGTCAAGGAGAAAGGGTTTTGGGGGAATATGGTGGTCAGGAATGCGATGTTGGACATGTATGTTAAGTGTGGCCAGAT GAAAGAAGCATGGTGGTTAGCTAATGAGATGGATGAGACGGATGTGGTGACATGGACAACTTTGATTAATGGATATATTC TGAATGGTGATGCAAGAAGTGCTTTGATGCTTTGTCGGGTAATGCTGTTGGAAGGAGTGAAGCCAAATTTAGTTAGTGTA GCTTCTCTGCTATCTGCCTGTGGCAGTTTTGGTTCTTTGAACTATGGCAAGTGCCTTCATGCATGGGCAATAAGGCAAAA GCTTGAGTCTGAGGTCATAGTAGAAACTGCCTTGATTGATATGTATGCCAAATGCAATTGTGGCAACCTCAGTTATAAAG TGTTCATGAAAACCTCTAAAAAGAGAACAGCCCCATGGAATGCTCTTCTATCTGGGTTCATACATAATAGCCTTGTAAGA GAAGCAATACAACTCTTTAAACAAATGTTAGTGAAAGATGTACAACCTGACAATGCAACCTTTAATAGTCTTCTTCCTGC ATATGCTGTTCTTGCTGACCTCAAACAGGCAATGAACATACATTGTTACCTTATAAGGTCAGGATTTCTTTACAGACTTG AAGTAGCAAGTATTCTAGTTGACATATACTCAAAGTGTGGAAGTTTAGGATATGCTCACCACATTTTTAATATAATTCCT CTGAAGGACAAGGATATTATTATTTGGAGTTCCATAATTGCTGCTTATGGAAAGCATGGGCATGGAGAAATGGCCGTGTC ACTTTTTAATCAGATGGTTCAATCTGGAGTGCAACCAAATCAAATCACATTCACCTCTGTTCTGCATGCATGCAGCCATG CCGGTTTGGTGGATGAGGGTTTGTCTCTGTTCAAGTTTATGCTTAAACAACATCAAATTATTCCTCTTGTTGATCACTAT ACATGCATCATTGATCTTCTTGGTCGTGCTGGTCAATTGAATGATGCTTATAATCTTATTAGAACAATGCCTATAAAACC TAACCATGCTGTATGGGGTGCACTACTTGGCGCTTGTGTGAGTCATGAGAATGTTGAACTGGGAGAGGTGGCTGCTAGGT GGACTTTTGAGCTTGAACCTGAAAACACTGGAAACTATGTTCTGTTGGCAAACCTTTATGCTGCTGTAGGAAGGTGGAGA GATGCAGAGAATGTTAGAGATATGGTAAATGTGGTAGGATTGAGAAAATTACCTGCTCAAAGTTTAGTTGAGGTGAGAAG TGAGTGA
CDS sequence (LotjaGi5g1v0362900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATGGGCCAATGAAGAGGATTGTGACCACTGCAACACAGTGCGAATCGCTCTTGCGAAAATTTTCAGCTTCGAATTC CCTTTCAGAAACCAAAAAGCTTCATGCTTTCATCCTCACCTCTGGCCTTCTCTCTTCCTCCACCAACCTTTCCTCTAAGC TTGCTACAACCTACGCACACTGCCACCATGCTTCCTATGCCTCCCACCTGTTTGATACATTGCCCCAACGGAGCTTGTTC TCGTGGAACACTATGATGAGGATGTATGTTCAAATGGGTCGCCCCCATGATGCCCTCAACTTGTTTGTTGAAATGATCCA CTCGGGTCTGACTCTGCCCGACAACTTCACGTACCCTATCATTATCAAGGCTTGCAGTGACCTGTCCTTCCTTGATATGG GTGTTGGGGTTCATGGGATGACATTTAAGGCTGGCTTTGATTTGGACACATTTGTTCAGAACTCTTTGCTGGCAATGTAT ATGAATGCTGGGGAGAAAGAACAAGCACAGCTGGTTTTTGACTTGATGAAGGAACAAACCGTCGTGTCTTGGAATACCAT GATTAATGGCTACTTTCGAAATAACCGTGCAGAGGAGGCGTTAAGGGTTTATAACAGAATGATGGATGCTGGTGTGGAGC CTGATTGTGCTACTGTTGTTTCAGTTTTGCCAGCTTGTGGACTTTTGAAGAATGTGGAGCTTGGGAGAGAGGTTCATGCG TTGGTCAAGGAGAAAGGGTTTTGGGGGAATATGGTGGTCAGGAATGCGATGTTGGACATGTATGTTAAGTGTGGCCAGAT GAAAGAAGCATGGTGGTTAGCTAATGAGATGGATGAGACGGATGTGGTGACATGGACAACTTTGATTAATGGATATATTC TGAATGGTGATGCAAGAAGTGCTTTGATGCTTTGTCGGGTAATGCTGTTGGAAGGAGTGAAGCCAAATTTAGTTAGTGTA GCTTCTCTGCTATCTGCCTGTGGCAGTTTTGGTTCTTTGAACTATGGCAAGTGCCTTCATGCATGGGCAATAAGGCAAAA GCTTGAGTCTGAGGTCATAGTAGAAACTGCCTTGATTGATATGTATGCCAAATGCAATTGTGGCAACCTCAGTTATAAAG TGTTCATGAAAACCTCTAAAAAGAGAACAGCCCCATGGAATGCTCTTCTATCTGGGTTCATACATAATAGCCTTGTAAGA GAAGCAATACAACTCTTTAAACAAATGTTAGTGAAAGATGTACAACCTGACAATGCAACCTTTAATAGTCTTCTTCCTGC ATATGCTGTTCTTGCTGACCTCAAACAGGCAATGAACATACATTGTTACCTTATAAGGTCAGGATTTCTTTACAGACTTG AAGTAGCAAGTATTCTAGTTGACATATACTCAAAGTGTGGAAGTTTAGGATATGCTCACCACATTTTTAATATAATTCCT CTGAAGGACAAGGATATTATTATTTGGAGTTCCATAATTGCTGCTTATGGAAAGCATGGGCATGGAGAAATGGCCGTGTC ACTTTTTAATCAGATGGTTCAATCTGGAGTGCAACCAAATCAAATCACATTCACCTCTGTTCTGCATGCATGCAGCCATG CCGGTTTGGTGGATGAGGGTTTGTCTCTGTTCAAGTTTATGCTTAAACAACATCAAATTATTCCTCTTGTTGATCACTAT ACATGCATCATTGATCTTCTTGGTCGTGCTGGTCAATTGAATGATGCTTATAATCTTATTAGAACAATGCCTATAAAACC TAACCATGCTGTATGGGGTGCACTACTTGGCGCTTGTGTGAGTCATGAGAATGTTGAACTGGGAGAGGTGGCTGCTAGGT GGACTTTTGAGCTTGAACCTGAAAACACTGGAAACTATGTTCTGTTGGCAAACCTTTATGCTGCTGTAGGAAGGTGGAGA GATGCAGAGAATGTTAGAGATATGGTAAATGTGGTAGGATTGAGAAAATTACCTGCTCAAAGTTTAGTTGAGGTGAGAAG TGAGTGA
Protein sequence (LotjaGi5g1v0362900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNGPMKRIVTTATQCESLLRKFSASNSLSETKKLHAFILTSGLLSSSTNLSSKLATTYAHCHHASYASHLFDTLPQRSLF SWNTMMRMYVQMGRPHDALNLFVEMIHSGLTLPDNFTYPIIIKACSDLSFLDMGVGVHGMTFKAGFDLDTFVQNSLLAMY MNAGEKEQAQLVFDLMKEQTVVSWNTMINGYFRNNRAEEALRVYNRMMDAGVEPDCATVVSVLPACGLLKNVELGREVHA LVKEKGFWGNMVVRNAMLDMYVKCGQMKEAWWLANEMDETDVVTWTTLINGYILNGDARSALMLCRVMLLEGVKPNLVSV ASLLSACGSFGSLNYGKCLHAWAIRQKLESEVIVETALIDMYAKCNCGNLSYKVFMKTSKKRTAPWNALLSGFIHNSLVR EAIQLFKQMLVKDVQPDNATFNSLLPAYAVLADLKQAMNIHCYLIRSGFLYRLEVASILVDIYSKCGSLGYAHHIFNIIP LKDKDIIIWSSIIAAYGKHGHGEMAVSLFNQMVQSGVQPNQITFTSVLHACSHAGLVDEGLSLFKFMLKQHQIIPLVDHY TCIIDLLGRAGQLNDAYNLIRTMPIKPNHAVWGALLGACVSHENVELGEVAARWTFELEPENTGNYVLLANLYAAVGRWR DAENVRDMVNVVGLRKLPAQSLVEVRSE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 11 | 45 | 35 | 5.196 | ||
| Gene3D | 12 | 139 | 128 | 4.7E-16 | ||
| PANTHER | 23 | 135 | 113 | 6.7E-132 | – | |
| ProSiteProfiles | 78 | 112 | 35 | 11.575 | ||
| Pfam | 79 | 126 | 48 | 1.0E-10 | ||
| TIGRFAM | 80 | 111 | 32 | 2.1E-7 | ||
| SUPERFAMILY | 82 | 647 | 566 | 1.14E-5 | ||
| ProSiteProfiles | 114 | 148 | 35 | 6.369 | ||
| PANTHER | 121 | 237 | 117 | 6.7E-132 | – | |
| Gene3D | 140 | 225 | 86 | 6.8E-21 | ||
| ProSiteProfiles | 149 | 179 | 31 | 7.739 | ||
| Pfam | 154 | 178 | 25 | 1.4 | ||
| Pfam | 180 | 226 | 47 | 7.0E-13 | ||
| ProSiteProfiles | 180 | 214 | 35 | 13.724 | ||
| TIGRFAM | 182 | 216 | 35 | 2.7E-12 | ||
| ProSiteProfiles | 215 | 249 | 35 | 5.272 | ||
| Gene3D | 226 | 332 | 107 | 3.3E-23 | ||
| PANTHER | 233 | 340 | 108 | 6.7E-132 | – | |
| ProSiteProfiles | 250 | 280 | 31 | 8.517 | ||
| Pfam | 255 | 279 | 25 | 0.0018 | ||
| ProSiteProfiles | 281 | 315 | 35 | 10.852 | ||
| Pfam | 281 | 327 | 47 | 7.6E-8 | ||
| TIGRFAM | 283 | 316 | 34 | 1.2E-5 | ||
| ProSiteProfiles | 316 | 350 | 35 | 5.305 | ||
| Gene3D | 333 | 449 | 117 | 3.6E-17 | ||
| PANTHER | 335 | 429 | 95 | 6.7E-132 | – | |
| ProSiteProfiles | 382 | 416 | 35 | 10.161 | ||
| Pfam | 385 | 428 | 44 | 1.1E-10 | ||
| TIGRFAM | 386 | 417 | 32 | 4.8E-6 | ||
| ProSiteProfiles | 417 | 451 | 35 | 8.002 | ||
| PANTHER | 424 | 648 | 225 | 6.7E-132 | – | |
| Gene3D | 455 | 656 | 202 | 5.4E-36 | ||
| Pfam | 484 | 532 | 49 | 2.9E-13 | ||
| ProSiteProfiles | 485 | 519 | 35 | 12.156 | ||
| TIGRFAM | 488 | 520 | 33 | 1.0E-7 | ||
| ProSiteProfiles | 520 | 550 | 31 | 9.229 | ||
| TIGRFAM | 522 | 550 | 29 | 2.3E-4 | ||
| ProSiteProfiles | 556 | 586 | 31 | 6.533 | ||
| Pfam | 559 | 583 | 25 | 0.16 | ||
| ProSiteProfiles | 622 | 656 | 35 | 6.445 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0362900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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