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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0000200 |
| Transcript ID | LotjaGi6g1v0000200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-binding protein SMUBP-2; TAIR: AT5G35970.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2; TrEMBL-Plants: tr|A0A151RV11|A0A151RV11_CAJCA DNA-binding protein SMUBP-2; Found in the gene: LotjaGi6g1v0000200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:23940..29929) extracted from Lotus japonicus Gifu genome v1.2.
TGTGCTGAGATTGACAATGATTCAACTTCAATTGCAGCTCAGCATAAGGAAGTTGCCAGAAAGATAACGATGCCCAAGAC TGTCCAAGGTGTTTTAGGAATGGACATAAGAAAGGTCAGAGCAGTACAGCACAGGATTGATGAATTCGCCAATCTTATGT CAGGACTACTCCATATTGAAAGGGATGCTGAATTGGAGTTTACTCAGGAGGAATTAGATGCTGTTCCTAGACCTGATGCT ACTTCGGATTCATCGAAACCGATTGAATTCTTGGTTAGCCATAGCCAGCCTCAGCAAGAACTCTGTGACACCATTTGTAA TTTAAACGCCATCAGTACCTCTAAAGGTCTTCTATTTTTCTTTTTTTCTCTTTAGTTATTCAAGCATATGCTTTATGCGC ATCAAGGTCTGTCACTTAATTTCTTGCTGCAATTTAGTCATGCATGTGTTGTAAGACAAGTTGATTTGCAGTAGTTCTTT TTATTCCTCCAATTTCTTTCTATTAGTCTTAGTTGCAACTTGCAAGTATATAGCTTCCATGGTTGATCTTCATCCCTTGA ACCAAATTGATTTTCTGTCATGTTGCTCTCTTATCTTAGTCTTCACTTAATTACTCTCTCCTATAGCTTGGTAGACATAG TAGGAATCATGAGCTTAGCCCCTTTATAATTTGCGCATTTTTGTATGATCACATTTGATTGTGTAAACAGGATTGGGGGG AATGCATTTGGTGTTATTCAAAGTTGAAGGGAACCACCGCTTGCCGCCTACTACTCTTTCTCCAGGAGACATGGTTTGTG TGAGAACGTGTGACAGCAGGGGTACAGTTACAACATCTTGCATGCAAGGATTTGTTCATAGTCTTGGGGATGATGGCTAT AGTGTAACTGTTGCTTTGGAGTCACGCCACGGTGATCCTACATTCTCTAAACTATTTGGAAAGAATGTGCGCATTGACCG TATTCAAGGACTGGCTGATACACTTAACTATGAGGTATTGAAATCTATCATGTGATTCTTGCATACAGCCAAAACATTTT CTTGCTCCAACAAATATTTGTGAAAGGGTGCCACAAGTATTATGAGTGTTGAAACTTGAAAGACCAAGTAAGAAGTTGTG TACACAATAAAATAATACCTATGATATATAGATAAAAAATAATCTATGTCAACTGTTAATTACTTCAACTATATTAGTTA GGAAGGTGAACAAGTCCAACAGTCTGAAACTATCAAAATACATTTGCCTTTGCTAACCCATGAAACACCAATTCTTTACT ACTAGAAACTAGGAAGTTGACATTGGTGAAGTTGGCAAAATAGAAAGAGCAAAAGACTGTCATATTTGGGCACTTGTATT CCAATGGGTTGCTCTCTTTATCTTCTTGGCTATTGGCATTATTTGATTGTAGTTTCCTGTTTTGGGTTTATGTCGAAGTA CTTATCATGTAAGTGCCTATTTATAAGTTTCTTTGAAACACTTATTTGAAATATGCTCAAAAGTTCTTATAGGCATGTAT AAGCTCTTATCCTAAGTTTATCTGAGAAGCTTATGAAAATAAGCTCAAAAGAGCTTATAAGTAGGCCATTAGCTATTTGT ATAAAATTCAACCAAACAACTGCTTTAGTGCTTATGCTATAAGAGAAGCCCAAATAAGTTAGTTATTTAATGGTTCTTCT CCGAGGACAACAAAGTCATATGTATCTTCTTTTGTTTTAGAAATTATGTGGATCTCCTTATATTAAATGTTAGATTTATT GTAATAGCCATCTCTATGTTTTCAAGTTACTTTATGTTAGGATCGGAAAAATTCCTAACATTGAAAGGGAATATTTTTGG TATTTTTGTATATTAAAACTAAAAATAAGATAAACCTGGAATTTTATTAAGAACCAAGAGGCTGGATCGTCCCCAATAGG GCTGATTTCCACAACTAAATTACTCAATTCATGACTCTAACCTAAGGAGGGTACTTCTATTTATAATAACTAATCCTAAT AACAATAAACTTAAACCCTAAGAAATAAAGAAGATATACTTCTAAAATAAAAGATAACCTCCTAATATAAAAAATACTCT AAATCTAAAAGACAATTCAACCCAAAAACAAAAGATCTCATATGATGAACTCTAAAACTGAAAAGATAATATAAAATAAA TCTATATCCCTAATAATTAGATCCTAACACTTTAGCATTTTAAGGAAATACTGATGTCATGTACGTATGATTTATGTACT CTGTTTTAAAATATTTATCTTTTATCATACATGAGAATGCATTAAACTTGACAAACTCTAAGAAGGTGGTCAATTTTTGA TTCATAAGATTGAACTGACAAATTCTGGTGGAATTTGATCTTTCTGTTCATAATTACCATGTGTTAAAAAAGGATGCTAT GTCATGTATTTAGTTTTAAGCATGTTTGAAAAGTGAATATAATTTATCAAATTTCTTTTCCTAAAAAGTAATAATATTGT CTCAAAGTTGAACATTGTCAACATTGGTGAGTCTATTCATCTAGCCATCCGTCCTATAATCTCATGAAATAATTATTTCC TCTTTTTCTTAATTCTACATTTAGCGATCAATTTTAAACAGATTAACATATAAGTTGACTGTGATGGTTCTGTTTGTTAA TTTTATTAAAATTTTGCTCATTATCTCACTGATTATATATACGTACATACTCATCTCTTAATCAGCTTTTTATTATTTTT TCCAGCGCAACTGTGAAGCCCTAATGCTGCTCCAGAAGAATGGATTGCGAAAGAAGAATCCTTCAATTTCTGTTGTTGCT ACACTCTTTGGAGATGGTGAAGATGTTGCATGGCTTGAAAAGAATGATTTGGCTGACTGGGCAGAAGAAAGTTTGAATGG AATATTAGGAAGTGAAACCTTTGATAATTCTCAGCAGAGAACAATTGCACTGGGTTTGAATAAGAGGAGGCCAGTATTGG TTATCCAAGGGCCTCCTGGTTCAGGCAAGAGTGGTTTGCTCAAGCAGCTTATAGTATGTGCTGTTAGACAAGGTGAAAGG GTTCTTGTTACAGCACCTACTAATGCAGCTGTTGATAACATGGTTGAAAAGCTTTCGAGTGTTGGCTTAAATATTGTGCG GGTTGGAAATCCGGCTTGTACATCAAAAACAGTGGGATCAAAATCTTTGGGAGAAATCGTAAATGCAAAACTTGCAAGTT TTCGAGAAGAGTATGAGAGGAAGAAGTCAGATCTAAGGAAAGATCTAAGACATTGTTTAAAGGATGATTCATTAGCTGCA GGCATACGGCAACTTTTGAAACAGCTGGGGAGGTCTCTGAAGAAAAAGGAAAAGCAGACCATGGATGAAGTTATGTCTAG TGCTCAGGTTGTGCTTGCCACCAATACTGGAGCAGCTGATCCTTTGATCCGAAGGCTAGATGCTTTTGACTTGGTTGTAA TAGATGAAGCTGGACAGGCAATTGAACCCTCTTGCTGGATTCCTATATTACAGGGAAACCGCTGTATTCTTGCTGGTGAT CAATGCCAACTTGCTCCTGTCATATTATCTAGAAAAGCCCTAGAAGGTGGTCTAGGAATATCTCTACTTGAGAGAGCTAC AACATTGCATGAGGGTATTCTCACCACCAGGTTAACAACACAATACCGTATGAACAATGCAATTGCTAGCTGGGCTTCAA AGGAGATGTATGGAGGCTTGTTGAAGTCCTCTAAGACTGTGTTTTCTCATCTTCTTGTAGACTCTCCTTTTGTTCAGGTA TTATGCTCGTAAATTACATTTCCATTACTTTTGAAGTGAAGGCTTCTATTACATCTTGCTCCTTTTTGGCAACCGGTGCT GATTACGCATAGGTTGGCGAAATATTTATAACTCAAAATTCTCAACAAACAACATTGAATGACTCTGGATGTACAGATCG GGAGACTTTACATGACGCAATATTGTCAATAATTATTGTATGAATAAATTAAGAATAACTGCTTGTCAATTACCATTATA TTAGCTTTCAAAGCTTTTCTGTAACATTTGAGTTGCCTATACTTTTATACTCAGGGATGCATATGATGCGTGTATTGATC TTTGTGTCCATTTACTTTTACTACTACTAATTCTTATTACATAAATGGAAAGTTTGACCTTGCTGTTGTTGCAGCCTACA TGGATAACACAGTGCCCACTGCTATTGCTTGATACTAGAATGCCATATGAAAGTCTGTCTGTTGGTTGTGGAGAGCATCT TGACCCAGCTGGAACAGGCTCATTTTATAATGAAGGAGAAGCTGACATCGTATTGCAGCATGTCTTTTCCTTAATTTATG CTGGTAATTATGTAGAAATAAAAGCTTTTTTAAGGTGATAGATTTTAGCATAAATCTTTTTCCCAAGTTGAATGTTTTGT GGTATTAAAAAGAACCTGTAAGAACAAATTAAAATGAACAAGACTCTTTTTGGGTTAAAGAGATTGAATTGAAAGGCACA ATGTGCAGCTCAATGGCACTTAAGTCGAAGAGGGATCTCAGCCTCAAATAGCAATAAAATTGTGCACCCTCTGATAAACA CTAAATTACAATACACACTTGCTCTAATCTAAAATATACTTGACAATACCAAAATCAGAAAACGTTACCTTTCAGACCTG AACAAACATGCTGTTAGTTTGTTTTTATCAATAAGATAGCAGCCAAGCTAAAGAGACTAAAACTCTTACGTCACTGCTCT CCACAGCCTACGTGCTGTATAGAATTCAGAAAAGATAGAATAGAAATGAAACTGGTTATCATTGATGGTTGCTGTATAGA CTAAAACTCTTACTACATGCTGTATTTACTTGCAAATTATTGTCCTCTGTTTTACAAAACTTGTATGTTATGTTGAGCTG ATCATTAATCTCGATCCTCTTCTTAACTGCTTGGTTAATTTGCTTCATGTTCAAGTTCATTGAGTTTCCCACACTCTAGC TTGTAGACATTGTTCTGCATGGTTTTCTTGCCTGCATAGTTTCATTATTACATGGTTCTGAACTTAGACAAAGAAGTACA TATTCTAATTTTGTGCATGAAGTAGAGTAAAGAAGTAAGAATCTGGTTGTATTTCTATTCCTTTCTACCCCTACTTAGTA TTCAAGCATTTTTTTAATCCAAGACAAGAAAGTTAGATTAGTACATTTGATTTTGTTTTGTCATATTTATGAAATGCGAG TTCTCGGTCTTACTGGGTTCTGAAATTTTGCAATGCAACTTGTCTGTCATTTGTGTTTGCTGATATAAGATTTTCCCTTT AATTTGAATCTTAAATGCAGGTGTTAGCCCAACTGCTATTGTAGTGCAATCCCCTTATGTTGCTCAAGTACAACTTTTGA GGGACATGCTTGATGAGTTTCCAGAAGCTGCAGGTACCGAGGTTTCCACGATTGATAGCTTTCAAGGTCGGGAAGCTGAT GTTGTAATCTTATCCATGGTAAGACCTTAATCCAATCTTGACACCCATTGTTGAAACAAATTTCTTAGTTAATGAAAAAT GTAAATACTTGAGAAGAGTCAATAAGATATCACATAAATCACACATCATAACACAAAATCACAAATACTGTGCAAATAAA GGTGTCACTGGCGTGCACTTTAGAGGATAAAGTGCCGAATCATAACCATTGATCTGAAAATTAACAGTTAAGATTTCATT ATCTTCCAAGTTGTTAGGTCAAACATTGCTACTGACATCCTTGCACCTGTTTTGTTAAAAAATTAAGGTGCGATCAAACA CTTTGGGAGCTGTTGGATTTCTGGGGGACAGCAGAAGAATCAATGTTGCCGTTACAAGAGCCCGCAAACATTTGGCAGTG GTTTGTGACAGCTCAACTATATGCCACAATACCTTCCTAGCAAGACTTATGCGTCACATAAGACGCTTTGGCAGGATTAA GCATGTAGAACCAGGTAATTTTGGAGGGTATGGTCTTGGGATGAATCCAATATTACCTTCCATTAATTAG
CDS sequence (LotjaGi6g1v0000200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCCAAGACTGTCCAAGGTGTTTTAGGAATGGACATAAGAAAGGTCAGAGCAGTACAGCACAGGATTGATGAATTCGC CAATCTTATGTCAGGACTACTCCATATTGAAAGGGATGCTGAATTGGAGTTTACTCAGGAGGAATTAGATGCTGTTCCTA GACCTGATGCTACTTCGGATTCATCGAAACCGATTGAATTCTTGGTTAGCCATAGCCAGCCTCAGCAAGAACTCTGTGAC ACCATTTGTAATTTAAACGCCATCAGTACCTCTAAAGGATTGGGGGGAATGCATTTGGTGTTATTCAAAGTTGAAGGGAA CCACCGCTTGCCGCCTACTACTCTTTCTCCAGGAGACATGGTTTGTGTGAGAACGTGTGACAGCAGGGGTACAGTTACAA CATCTTGCATGCAAGGATTTGTTCATAGTCTTGGGGATGATGGCTATAGTGTAACTGTTGCTTTGGAGTCACGCCACGGT GATCCTACATTCTCTAAACTATTTGGAAAGAATGTGCGCATTGACCGTATTCAAGGACTGGCTGATACACTTAACTATGA GCGCAACTGTGAAGCCCTAATGCTGCTCCAGAAGAATGGATTGCGAAAGAAGAATCCTTCAATTTCTGTTGTTGCTACAC TCTTTGGAGATGGTGAAGATGTTGCATGGCTTGAAAAGAATGATTTGGCTGACTGGGCAGAAGAAAGTTTGAATGGAATA TTAGGAAGTGAAACCTTTGATAATTCTCAGCAGAGAACAATTGCACTGGGTTTGAATAAGAGGAGGCCAGTATTGGTTAT CCAAGGGCCTCCTGGTTCAGGCAAGAGTGGTTTGCTCAAGCAGCTTATAGTATGTGCTGTTAGACAAGGTGAAAGGGTTC TTGTTACAGCACCTACTAATGCAGCTGTTGATAACATGGTTGAAAAGCTTTCGAGTGTTGGCTTAAATATTGTGCGGGTT GGAAATCCGGCTTGTACATCAAAAACAGTGGGATCAAAATCTTTGGGAGAAATCGTAAATGCAAAACTTGCAAGTTTTCG AGAAGAGTATGAGAGGAAGAAGTCAGATCTAAGGAAAGATCTAAGACATTGTTTAAAGGATGATTCATTAGCTGCAGGCA TACGGCAACTTTTGAAACAGCTGGGGAGGTCTCTGAAGAAAAAGGAAAAGCAGACCATGGATGAAGTTATGTCTAGTGCT CAGGTTGTGCTTGCCACCAATACTGGAGCAGCTGATCCTTTGATCCGAAGGCTAGATGCTTTTGACTTGGTTGTAATAGA TGAAGCTGGACAGGCAATTGAACCCTCTTGCTGGATTCCTATATTACAGGGAAACCGCTGTATTCTTGCTGGTGATCAAT GCCAACTTGCTCCTGTCATATTATCTAGAAAAGCCCTAGAAGGTGGTCTAGGAATATCTCTACTTGAGAGAGCTACAACA TTGCATGAGGGTATTCTCACCACCAGGTTAACAACACAATACCGTATGAACAATGCAATTGCTAGCTGGGCTTCAAAGGA GATGTATGGAGGCTTGTTGAAGTCCTCTAAGACTGTGTTTTCTCATCTTCTTGTAGACTCTCCTTTTGTTCAGCCTACAT GGATAACACAGTGCCCACTGCTATTGCTTGATACTAGAATGCCATATGAAAGTCTGTCTGTTGGTTGTGGAGAGCATCTT GACCCAGCTGGAACAGGCTCATTTTATAATGAAGGAGAAGCTGACATCGTATTGCAGCATGTCTTTTCCTTAATTTATGC TGGTGTTAGCCCAACTGCTATTGTAGTGCAATCCCCTTATGTTGCTCAAGTACAACTTTTGAGGGACATGCTTGATGAGT TTCCAGAAGCTGCAGGTACCGAGGTTTCCACGATTGATAGCTTTCAAGGTCGGGAAGCTGATGTTGTAATCTTATCCATG GTGCGATCAAACACTTTGGGAGCTGTTGGATTTCTGGGGGACAGCAGAAGAATCAATGTTGCCGTTACAAGAGCCCGCAA ACATTTGGCAGTGGTTTGTGACAGCTCAACTATATGCCACAATACCTTCCTAGCAAGACTTATGCGTCACATAAGACGCT TTGGCAGGATTAAGCATGTAGAACCAGGTAATTTTGGAGGGTATGGTCTTGGGATGAATCCAATATTACCTTCCATTAAT TAG
Protein sequence (LotjaGi6g1v0000200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPKTVQGVLGMDIRKVRAVQHRIDEFANLMSGLLHIERDAELEFTQEELDAVPRPDATSDSSKPIEFLVSHSQPQQELCD TICNLNAISTSKGLGGMHLVLFKVEGNHRLPPTTLSPGDMVCVRTCDSRGTVTTSCMQGFVHSLGDDGYSVTVALESRHG DPTFSKLFGKNVRIDRIQGLADTLNYERNCEALMLLQKNGLRKKNPSISVVATLFGDGEDVAWLEKNDLADWAEESLNGI LGSETFDNSQQRTIALGLNKRRPVLVIQGPPGSGKSGLLKQLIVCAVRQGERVLVTAPTNAAVDNMVEKLSSVGLNIVRV GNPACTSKTVGSKSLGEIVNAKLASFREEYERKKSDLRKDLRHCLKDDSLAAGIRQLLKQLGRSLKKKEKQTMDEVMSSA QVVLATNTGAADPLIRRLDAFDLVVIDEAGQAIEPSCWIPILQGNRCILAGDQCQLAPVILSRKALEGGLGISLLERATT LHEGILTTRLTTQYRMNNAIASWASKEMYGGLLKSSKTVFSHLLVDSPFVQPTWITQCPLLLLDTRMPYESLSVGCGEHL DPAGTGSFYNEGEADIVLQHVFSLIYAGVSPTAIVVQSPYVAQVQLLRDMLDEFPEAAGTEVSTIDSFQGREADVVILSM VRSNTLGAVGFLGDSRRINVAVTRARKHLAVVCDSSTICHNTFLARLMRHIRRFGRIKHVEPGNFGGYGLGMNPILPSIN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 717 | 714 | 0.0 | – | |
| PANTHER | 4 | 717 | 714 | 0.0 | – | |
| Gene3D | 78 | 180 | 103 | 3.4E-97 | – | |
| Gene3D | 181 | 477 | 297 | 3.4E-97 | – | |
| SMART | 242 | 494 | 253 | 0.0071 | ||
| SUPERFAMILY | 245 | 683 | 439 | 3.95E-57 | ||
| CDD | 246 | 495 | 250 | 2.04585E-80 | – | |
| Pfam | 246 | 462 | 217 | 1.6E-47 | ||
| SMART | 261 | 476 | 216 | 0.0074 | ||
| Coils | 347 | 367 | 21 | - | – | |
| Pfam | 472 | 675 | 204 | 1.1E-47 | ||
| Gene3D | 494 | 702 | 209 | 5.6E-54 | – | |
| CDD | 496 | 692 | 197 | 6.80424E-58 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0000200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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