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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0001900 |
| Transcript ID | LotjaGi6g1v0001900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT4G21300.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300; TrEMBL-Plants: tr|A0A072VHY0|A0A072VHY0_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi6g1v0001900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:523237..526792) extracted from Lotus japonicus Gifu genome v1.2.
GAGCGAATCAGCTAGGTTGAAATGAAAGTGGTAAGCCAAGAACATAAAACTAGAAAAAGAATATCTTCTAAAAAATTATT GTAGATTTAATATTTATTTACCAAGTATGCCCATAACTCGTCCTCCAAAGACCGTATACATTTCTTCTTCTTGTGGTGTA TTTTCGTACTAACGTGCTACTCCATTCCCTACTCCTAATGGAACAATGCTAATGGAGTGTTCAACTGATACATCATACAT ACATGTGATATGAATATGAAGCACCCATCAATAACTGGGAACCTTGTTGCCTCTTGTAGGAGACGTCACTACGGCGAGGT TCTCCGTCGCTATTTGGATTTGAAGAACTCGAAATTCAGTTTGGATTGCTCTGCCATCACGCTTTGCCTCAAAAGTTGCG TTGCTCTTGGGAGGCTCGAATTTGGAAAAAGGGTTCATGTTGATTCCATCAAGCTTAATTTGAACTCTGACTGCTTTGTT GGTTCCTCTCTCATTCGACTCTATTCAGAATATGGGAAATTGGAAGATGCACACAGGGTGTTTGATGAAATTACCAACAA GGATCTTGTGGCTTATACCTCCATCATCACTGCCTATGCTCACTCTGGTGGTTCATGTGTTTATGGGGCCTTCCGGATTG CTTCAACAATGCAGGACCAACGCCTCTATCCCAATAGAGTAACCTTAGTGAGCTTGCTGCATGCAGCTGCGAAACTGGGC TCGCTTCAAGAGGGACGTGCAATCCATGGTTATGCTATTAGAAGAGGATTTGGCGTGTGTGATGAGATTTTTGAGACTAC CCTTTTGGACATGTACCATAAATGTGGGGGTGTAAAGATGGCTGCTGCTGTTTTTGGCAAGATGAATGCTACAAGTACGA CTGTTGGATCTTGGAACCCCTTGATAGCTGCTTATCTTCATAATGGACAGGCTTTAGAAGCTTTTGAACTTTTTCGTCAA ATGATTCATAGAAAGGTTTTGCCTGATTTGTTAACCTTGGCCAATGCTATTCTGTCCTGTGCTGAGTTGGATTATTTATG TCACGGAAAGAGTATCCATGGATACATGATCCGGATGGGGGTGGAACCTGATATGGTAGCTTGCACTGCTTTGGTTGATC TATACTCTAAATTTGATGTAACCAAAGCTAGAAAAATGTTTGAAAGGTTGAGGAATAAGGACGCTGTGATATATAATGTT ATGATGACTGGTTATCTCAAAAATGATTTGCCTGTGGAGGCGATAAATGTTTTTCATGAAATGATCAAGATGAGTGTTAG TCCCAATGTGGCTTTGTTTCTGAATTTAATTTCTGCAGTGTCAGACTTGAGAGATATCAGACTAGCCAGGTCTATCCATG GGTATGTTTTGAGGCATCAATACATTACACGTGTGGAAATTGCAAATCAAATCATTCATACATATGCAAAATGTGGGTAT TTACAGTATGCAAGGTTAGTCTTCAATAGGATGAGATCAAGGGACTTGGTTTCATGGACCTCAATGATAACGGGTTATGT TCATCATGGCCATATCGATGAAGCCATTATTTTGTTTCGTTTGCTGCAGAGAGAAAATCTAAGAATTGACTCTGTTACTC TAATTAGTCTCCTTCAGGCATTATCCCAGCTTGGATGTCTAAGTGCTGTTAAGGAAGTTCACTGTCTCACTTACCGAGCT TTTCATGGTAAAGAGTTGTCTGTAAATAATTCTCTTATTACTACTTATGCTAAGTGTGGAAAATTAAATATGGCTAGATA TCTATTTCAGCAAATGACTGAACGGTGTCTCACATCCTGGAATGCAATGCTAGGAGCATATGCAATGCATGGAAATTATG CAGAGGTGCTGAAACTCTTTAATCATATGAAATTGGGAAATATTAAACCTGATGAATTAACCTTTACATCGATACTCACT GCCTGCAGCCACTCAGGATTGGTAGAAGAGGGTCTACAGATTTTTAGGAGCATGATTAGAGAATACACCATAGTTCCAGG TGAAGTTCATTATAATTGTATCATAGATTTATTAAGCAGAGCTGGACAGCTTACAGAGGCATACAATCTGGTTAAAAGCA TGCCATCAACACACAGTTCTGCTGCACTGTGTACTTTACTTTCTGCTTGCAGACTCTATGGGGATACAGAGATTGGTGAG GCTATTGCTAAGCAGATATTAAAACTGGAACCACGTAACTCAAGTTCTTATGTTTTGATATCAAATATATTAGCAGAAGG GGGAAGGTGGGATGAAGTAGCTCATATAAGGGCCATGACAAAGGATAAAGAATTGAAGAGTACTCCAGGATATAGTCTGA TAGAGCTAGACAAGCAGCGAGAGGTGTGATTGGTCCCTTTTCACAAACTTGCTGTGTGCAATCCATTTTGCGCATCTTGT CTAATCATCCAAGTCTCCTCAACATGGCCACCATCTCCTGGATCTGCCCTGTATCATTAGGAATTGGTTTAAAGAGGATC ATTTCTGTTCATTCCTTTTTCATCTTAGTATTTGCTCATTCAATTATTTTTAATTTTGAATGAGCAAAATGCTTCTAGCT CTTGTCAAGGGCTGGTAAAGGCTTCCAAACATGGCTCTGAACCACACAACAAAGACATCAAGCTAGGCTTTTTCTCACTA GGGGGAGTCAACTACATGTATCCAGCAATGGTATAGTGTCCTATCATGAAAAATGCGATTCATGTCTAAGGACAACCATC CATAACTCTCCCTATATGCATTACATAGCCTATCCCAAGGTCAGTATTTGTGTTAGTGAGTTATTGCTTTTAGTTTTACA TTTCTGTTAGAAAGTGGTTAATTTGTTAGATTCTAATTGTGTACATGTGATCTAGCCTTTTGTGCCAAGTAATCTGTATA TAAACAGATTCAACTCCGGTAATAAGTTTGATTCGTTATTTTCTCTCAATTACATCTGATCTTCTAATATGGTGTCAGAA GAGTAAACACACATTTCTGTTTTCTCCTCAAATTCATCATCTACTTTTTATCCCAGAGTTGTCATTGTCTTCTTCATCAA TTCTGTGCAGCTATGGATGATCCTCATAGTCCATCCTTTCTTCATCACAAAGACAGTCCAGGATTGGTATCGGTATCTCA GTTTCTTACCGGTGATAATTACCATTCTTGGAATTGCGCCATGGCCATGGCTTTGAGCGTGAAAAACAAACATGGCTTCA TTGATGGAAGCTTTTCTTGTCCTTCAGCCGACTATCCTGCCCTTCTTCAAGCTTGGACTCGCAACAATCACATAGTGATG TCTTGGATCCTCAATTCATTTTCTAAGGAAATTGGATCCAGCATTATCTACTGCCAGACAGCTCAAGACATCTGGAATGA TCTAAAGGATAGATTTCAATAATTGAATGGACCCAGGATTTTTCAATTGAAAATAGGACTCATAAATCTTCGACAAGATC AATTGTCTGTAAGTCACTCATTATGCCAAGGACCAATGACAGATGGTTCTGAACAATACAATGAAATTTGTTCTTTTTAA ACCATATAATGTTGATAAAGAAATTTGTATAGTTTC
CDS sequence (LotjaGi6g1v0001900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATATGAAGCACCCATCAATAACTGGGAACCTTGTTGCCTCTTGTAGGAGACGTCACTACGGCGAGGTTCTCCGTCG CTATTTGGATTTGAAGAACTCGAAATTCAGTTTGGATTGCTCTGCCATCACGCTTTGCCTCAAAAGTTGCGTTGCTCTTG GGAGGCTCGAATTTGGAAAAAGGGTTCATGTTGATTCCATCAAGCTTAATTTGAACTCTGACTGCTTTGTTGGTTCCTCT CTCATTCGACTCTATTCAGAATATGGGAAATTGGAAGATGCACACAGGGTGTTTGATGAAATTACCAACAAGGATCTTGT GGCTTATACCTCCATCATCACTGCCTATGCTCACTCTGGTGGTTCATGTGTTTATGGGGCCTTCCGGATTGCTTCAACAA TGCAGGACCAACGCCTCTATCCCAATAGAGTAACCTTAGTGAGCTTGCTGCATGCAGCTGCGAAACTGGGCTCGCTTCAA GAGGGACGTGCAATCCATGGTTATGCTATTAGAAGAGGATTTGGCGTGTGTGATGAGATTTTTGAGACTACCCTTTTGGA CATGTACCATAAATGTGGGGGTGTAAAGATGGCTGCTGCTGTTTTTGGCAAGATGAATGCTACAAGTACGACTGTTGGAT CTTGGAACCCCTTGATAGCTGCTTATCTTCATAATGGACAGGCTTTAGAAGCTTTTGAACTTTTTCGTCAAATGATTCAT AGAAAGGTTTTGCCTGATTTGTTAACCTTGGCCAATGCTATTCTGTCCTGTGCTGAGTTGGATTATTTATGTCACGGAAA GAGTATCCATGGATACATGATCCGGATGGGGGTGGAACCTGATATGGTAGCTTGCACTGCTTTGGTTGATCTATACTCTA AATTTGATGTAACCAAAGCTAGAAAAATGTTTGAAAGGTTGAGGAATAAGGACGCTGTGATATATAATGTTATGATGACT GGTTATCTCAAAAATGATTTGCCTGTGGAGGCGATAAATGTTTTTCATGAAATGATCAAGATGAGTGTTAGTCCCAATGT GGCTTTGTTTCTGAATTTAATTTCTGCAGTGTCAGACTTGAGAGATATCAGACTAGCCAGGTCTATCCATGGGTATGTTT TGAGGCATCAATACATTACACGTGTGGAAATTGCAAATCAAATCATTCATACATATGCAAAATGTGGGTATTTACAGTAT GCAAGGTTAGTCTTCAATAGGATGAGATCAAGGGACTTGGTTTCATGGACCTCAATGATAACGGGTTATGTTCATCATGG CCATATCGATGAAGCCATTATTTTGTTTCGTTTGCTGCAGAGAGAAAATCTAAGAATTGACTCTGTTACTCTAATTAGTC TCCTTCAGGCATTATCCCAGCTTGGATGTCTAAGTGCTGTTAAGGAAGTTCACTGTCTCACTTACCGAGCTTTTCATGGT AAAGAGTTGTCTGTAAATAATTCTCTTATTACTACTTATGCTAAGTGTGGAAAATTAAATATGGCTAGATATCTATTTCA GCAAATGACTGAACGGTGTCTCACATCCTGGAATGCAATGCTAGGAGCATATGCAATGCATGGAAATTATGCAGAGGTGC TGAAACTCTTTAATCATATGAAATTGGGAAATATTAAACCTGATGAATTAACCTTTACATCGATACTCACTGCCTGCAGC CACTCAGGATTGGTAGAAGAGGGTCTACAGATTTTTAGGAGCATGATTAGAGAATACACCATAGTTCCAGGTGAAGTTCA TTATAATTGTATCATAGATTTATTAAGCAGAGCTGGACAGCTTACAGAGGCATACAATCTGGTTAAAAGCATGCCATCAA CACACAGTTCTGCTGCACTGTGTACTTTACTTTCTGCTTGCAGACTCTATGGGGATACAGAGATTGGTGAGGCTATTGCT AAGCAGATATTAAAACTGGAACCACGTAACTCAAGTTCTTATGTTTTGATATCAAATATATTAGCAGAAGGGGGAAGGTG GGATGAAGTAGCTCATATAAGGGCCATGACAAAGGATAAAGAATTGAAGAGTACTCCAGGATATAGTCTGATAGAGCTAG ACAAGCAGCGAGAGGTGTGA
Protein sequence (LotjaGi6g1v0001900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNMKHPSITGNLVASCRRRHYGEVLRRYLDLKNSKFSLDCSAITLCLKSCVALGRLEFGKRVHVDSIKLNLNSDCFVGSS LIRLYSEYGKLEDAHRVFDEITNKDLVAYTSIITAYAHSGGSCVYGAFRIASTMQDQRLYPNRVTLVSLLHAAAKLGSLQ EGRAIHGYAIRRGFGVCDEIFETTLLDMYHKCGGVKMAAAVFGKMNATSTTVGSWNPLIAAYLHNGQALEAFELFRQMIH RKVLPDLLTLANAILSCAELDYLCHGKSIHGYMIRMGVEPDMVACTALVDLYSKFDVTKARKMFERLRNKDAVIYNVMMT GYLKNDLPVEAINVFHEMIKMSVSPNVALFLNLISAVSDLRDIRLARSIHGYVLRHQYITRVEIANQIIHTYAKCGYLQY ARLVFNRMRSRDLVSWTSMITGYVHHGHIDEAIILFRLLQRENLRIDSVTLISLLQALSQLGCLSAVKEVHCLTYRAFHG KELSVNNSLITTYAKCGKLNMARYLFQQMTERCLTSWNAMLGAYAMHGNYAEVLKLFNHMKLGNIKPDELTFTSILTACS HSGLVEEGLQIFRSMIREYTIVPGEVHYNCIIDLLSRAGQLTEAYNLVKSMPSTHSSAALCTLLSACRLYGDTEIGEAIA KQILKLEPRNSSSYVLISNILAEGGRWDEVAHIRAMTKDKELKSTPGYSLIELDKQREV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 16 | 16 | 5.0 | – | |
| Gene3D | 13 | 174 | 162 | 2.6E-16 | ||
| PANTHER | 42 | 165 | 124 | 4.7E-127 | – | |
| ProSiteProfiles | 74 | 108 | 35 | 8.67 | ||
| Pfam | 79 | 104 | 26 | 0.055 | ||
| ProSiteProfiles | 142 | 176 | 35 | 7.158 | ||
| PANTHER | 160 | 282 | 123 | 4.7E-127 | – | |
| Gene3D | 175 | 295 | 121 | 3.5E-19 | ||
| ProSiteProfiles | 178 | 208 | 31 | 5.842 | ||
| ProSiteProfiles | 211 | 245 | 35 | 10.742 | ||
| Pfam | 212 | 249 | 38 | 3.8E-7 | ||
| TIGRFAM | 214 | 246 | 33 | 2.0E-6 | ||
| ProSiteProfiles | 246 | 280 | 35 | 6.369 | ||
| PANTHER | 249 | 359 | 111 | 4.7E-127 | – | |
| ProSiteProfiles | 281 | 310 | 30 | 5.031 | ||
| Gene3D | 296 | 381 | 86 | 3.6E-13 | ||
| Pfam | 310 | 348 | 39 | 3.5E-9 | ||
| ProSiteProfiles | 311 | 345 | 35 | 11.575 | ||
| TIGRFAM | 313 | 347 | 35 | 6.4E-8 | ||
| PANTHER | 366 | 465 | 100 | 4.7E-127 | – | |
| ProSiteProfiles | 381 | 411 | 31 | 7.092 | ||
| Gene3D | 382 | 478 | 97 | 6.8E-19 | ||
| Pfam | 412 | 459 | 48 | 2.1E-8 | ||
| ProSiteProfiles | 412 | 446 | 35 | 10.6 | ||
| TIGRFAM | 414 | 447 | 34 | 1.4E-4 | ||
| PANTHER | 467 | 677 | 211 | 4.7E-127 | – | |
| Gene3D | 481 | 691 | 211 | 6.4E-38 | ||
| ProSiteProfiles | 482 | 512 | 31 | 8.1 | ||
| TIGRFAM | 487 | 512 | 26 | 0.0011 | ||
| Pfam | 487 | 512 | 26 | 0.0026 | ||
| ProSiteProfiles | 513 | 547 | 35 | 10.457 | ||
| Pfam | 515 | 560 | 46 | 5.5E-11 | ||
| TIGRFAM | 516 | 549 | 34 | 1.1E-6 | ||
| ProSiteProfiles | 548 | 578 | 31 | 9.525 | ||
| TIGRFAM | 551 | 578 | 28 | 3.3E-4 | ||
| ProSiteProfiles | 584 | 618 | 35 | 8.374 | ||
| Pfam | 586 | 612 | 27 | 0.0025 | ||
| TIGRFAM | 587 | 612 | 26 | 0.0018 | ||
| ProSiteProfiles | 650 | 684 | 35 | 6.401 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0001900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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