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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0002600 |
| Transcript ID | LotjaGi6g1v0002600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein, putative; TAIR: AT3G07200.1 RING/U-box superfamily protein; Swiss-Prot: sp|P19474|RO52_HUMAN E3 ubiquitin-protein ligase TRIM21; TrEMBL-Plants: tr|C6T066|C6T066_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi6g1v0002600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:623807..627909) extracted from Lotus japonicus Gifu genome v1.2.
TCTCTCTAATCTCACTACAACTTCAGCGTATGTTTTCTTTCTCACTTTTTTATGCCCTTGTTGCACAATCACACCCACAC ACACGTTTTTATGTCACTCTTTTTTTCATATCTCATTTTTTGTGTTCTGGAATTTTTTCAGATTCTGAACTGAAAAGATG AGTGCTCAAAATGGCTTTCAGAGGGCTTCTCGGTTGGGTGCAAGATACGAAGGCATGGAGCTGGATCTGAACCGTTCTCC ACCAAGAGAGACTCAAGAAGGGGAGGGTTCTTCATCTCTGCAATCACAAGTTCCAAGAATCGACGTGGACCTTACTCAAG ATGGTGATCATATCATTGAATCCTCACCCACAACTTTTGTTCAGGTTTGCATTTTATCATCTTCAATCTAAATCAGTGAA TTATAATTTATTTTATTATTATTAGTAGTATTATTATTCAAGCTGTTGAGTGGAGTTATCTCCTTTCTCTTCTAGATTCT GCTTTCTCCCCTAAGAATAGACATCCACAACATTCTAAGGCCTTCGTCTTGACAAAACCTTCGAATCATCAAACCTTTCT TTACCACCTAAACATCTACCCGAAAAATTCCCTAACCAGATCCATACCATATCTTCACCCTTCCTCCCCCCATAAATCAG AGATTGCAAGCCACCAAATCGCTATCCATCACCAAACCCATACCCACACCTAACTCTCCCCTTACAAAATATATTTTGCC AAAAAATGGTCATGATTGAACCACTTAACCTAATCCATTTTATTTAGAACAAAAAAGAAAAACCCTCACCCACGTTGATG TGTCGCCATATAGAGAGATCACAACAGAGGGATATGATCAGAGTGTCGGGTTGAGCTCATGATGAATGTTATGGTGAGGA AGAGGCATGAAGCAGGCAGATCTAGAGCACTTCATAAATATTTATACGATGATGGTTGAATGAGGTTTTGAAATCGCTGC ATCGCGTCTACGTGATGGTGTAAGATGGAATCATGACAATAAAGACCCTTTAGTGAGTTGAATCTTGGTTGCGTCGATGA TTGACCTATGGTGGTTGGCTGGGCTTTGATGATGTCTTCCAGATCAAGTTTGGGAGGGGAGAAGGTCATGGCGGGTGTGG ATAACTTGTTGGGTATTTATTTGGGATTCTTAAGTTCAATGCAAATCCATTGTTTCTTCTAATTAGTGATGCTGGATAAA CCTCATTATTGTGCTGAAGATTGTGGTTGTGTGGGTTTCAGATTGTGAAACGAGATGGAAGATTTTTGTGCTAGGATAGA ATGCAAGATTGTGGGAGGTAGGGTACAACTGTAGTGAATGGTGGCAACATGGAGTGTCTCGTGAGAAAAACTTAGAGTTC AGAAATAAAAACTAAATAATAATCCTAATGAGAATAATACTTGGATGTCACCTCACATGACAATCTCAATCATTCAGAAA ACGTTCTATCTCAGAAGCCAACACAGACCATGAATCATATGCAACCACACATCCTTAAAAAGGGACACATAAGCAACAAA AAAATTACGGAAGGGTTTGTTTCGCAATGCCAAACAGTCATTAAGGATCCAAAGTGCTCATTTAACACAACAACCTACCT CACATAATCACGATAGTAAAAGACCAACGACGAACCAACACATGCTAGAAGATTCTCATTGTGTTGGTCCTATAAGGGTG GGACTCGTTGTTAGTCTATTACTGAAAATCTTACTTAGGTTGATTCCACTACTTGAACAATTGATTATTGTAGTCATATG ATCATAAAAGCTCAAATGAGGCCCAAGGCTCCCATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAT TATTATTTTTGTTGTTGTTGTTAAAATATTAAGAGATGTTTATGCTTTGTTGGGAACTTATATTGTTGGGAACTGACATT GTATGTTTGATTGTGTTTTTCTTGGCTTACAACTAAGACTGCGAGAAGGACTCCCGGACCGCCTACTATTCATGAAATAG GTTTGTTTTCCAATAATTGCATTTCACTATTCTTGTCCACTTGTCTTAAGTTTATAGTATGATTTTTTGTGAGATACAAG AGACTCAACCAACCGTAGAATTAACATATACACCATTTTTAAACCTTTACTTTTAAAATATCACCAAATTGACTTATTGT AAGTAGATTATATGATGCGTGTCTCGGGTCATTGTCAAGTTGATGGATTGATGGTTAGGGATAATATATATATATATATA TATATATATATATATATATCTCGGTGCAGAACTAGAATACATATAAATGGTCGCACATTAGGGATGCAATAAATTTGAAA ATATATGTAGACATAGAATTTGTTATCCAAATGTTATTATAAATTATTGGTTTTAGTCCCTTTTTTACTAAAATCATATG CTCTCAAAATATGCATATTTCAATTAGTGAGATAGTCTATAAAAAATAGTACTTGACTTTTTTTTGGTATGTTCTTGAAA TACCTTCTTTTATTTTTGTAATGGTCATCTTAGAGTTGAATCATGACTAACTTTAGAACACAATGACTTAAGTAAAACAA AATAGATTAAAACTCATGACTTTTAATGATTTAGGGATAAAAAACATATTCAATTCTATATTTGAATAACCATATAGAAA TCTAGGTTTAGGACTTTCATTTAAATCGAGTGTCTTGTGGAAAATTGTTAAAAAGTTTTTATGGCAACTGAAAAGTCATG TATATGAGGATAAATGCAACTTAGATAATAAAAAGAAGGAAACAAACTAATATTGAAATGAAAAGATATAAATTAATATA TTTGATAAACAAATGAATTAATCCATGTCATTATATTATATAATCTTTTATTATGTATCCATTATTTGACCATAGCAAAT TGAATTTATTGAGTGATGATGGATTATGATTCTCCCTCTGCATTCACTTTTTTCTTGGTGGTTGTTGAGTTGATATGTTC CACGTAGTATTTCTAGTGTTATGAAAAATTACCTTCTCCAAATTTTTGATGATGGAGATATTTTGTGTCTATTACTTGAA GTTTTCTATCTCAAATAAGCATCTATGATTAATGTGATGGACTGACATATCGATCATTTATGATAATTGCAGTGGATCAA ATCAGGGCATTTGGAAATGGTCACAATGAATATAGAACGGGTCTCCAAAGGACACCAATTGTTAATTCTTCTAATCATAT TAGTTCAGAAGAATGTAGAAATTCTATGGTAATGAAATCCCTAACTTCTTGCATTATCATTTTATCTTAGGTAATTCATA TTTCATTGCTTTTCTATCTAGAGTTGATGTCGATGTTAAAGTCTTGTTACATAATTGTTGATTACATTCTAATATGTATC ATCTCTATCTCTATCTCTATCTTAAATTTAGAAGCAATTTTTATTCATCGTTTGTTTATTGACAACTTCAAACATAAAAA GTTATACTTGCTTACATAAGTTTGCAGGATTTCAAATTGTTGACTTATGCATTTATTTTGCAGAATGAAAATGCTAGAAA AGAACCTAAATCTCCAAAGGAAATTATCTTTAAATGCCCAATATGTATGGGTCCTTTGGTCGAAGAAATGTCAACTATGT GTGGTCATATTTTTTGCAAGGAGTGCATAAGTGCTTCAATAGCAGCACAGGGTAAATGCCCTATCTGTAGGGAAAATGTT GCTAAGAAGGATCTTATAAGAGTATTTCTTCCATCAACTAATTGAAGGTATGACAAAATAAGTGATTTCTTTAATTAATT GACTAAAGTATTTTCAAGTCATTTTGACTCTTTATGTCTTCACAGTAGTAGTTATAGAAAATACGTAGTAACTATGTAGT TAACTTCTGGCCTAATATGAATTCTAAGTCATTGCTCATTTTCCAAATAACAGGATGCTAATATGAACCTTATTTAGGAG AATTGGGACAAGAGCAACTTCTATCTGCTTTGGAGATTGCAAAGTGGTTGATGTTTCAACTATATTACTTGTAATAGATA CTTATGTGTTTTGAAGTAGTTATTTATCTCATTCATTTTCCATATCAAGACTTGGACATGCTAGTAAGATAAATTTCGAT GCAAATTTTATTTAAGAAATAAT
CDS sequence (LotjaGi6g1v0002600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGCTCAAAATGGCTTTCAGAGGGCTTCTCGGTTGGGTGCAAGATACGAAGGCATGGAGCTGGATCTGAACCGTTC TCCACCAAGAGAGACTCAAGAAGGGGAGGGTTCTTCATCTCTGCAATCACAAGTTCCAAGAATCGACGTGGACCTTACTC AAGATGGTGATCATATCATTGAATCCTCACCCACAACTTTTGTTCAGACTGCGAGAAGGACTCCCGGACCGCCTACTATT CATGAAATAGTGGATCAAATCAGGGCATTTGGAAATGGTCACAATGAATATAGAACGGGTCTCCAAAGGACACCAATTGT TAATTCTTCTAATCATATTAGTTCAGAAGAATGTAGAAATTCTATGAATGAAAATGCTAGAAAAGAACCTAAATCTCCAA AGGAAATTATCTTTAAATGCCCAATATGTATGGGTCCTTTGGTCGAAGAAATGTCAACTATGTGTGGTCATATTTTTTGC AAGGAGTGCATAAGTGCTTCAATAGCAGCACAGGGTAAATGCCCTATCTGTAGGGAAAATGTTGCTAAGAAGGATCTTAT AAGAGTATTTCTTCCATCAACTAATTGA
Protein sequence (LotjaGi6g1v0002600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSAQNGFQRASRLGARYEGMELDLNRSPPRETQEGEGSSSLQSQVPRIDVDLTQDGDHIIESSPTTFVQTARRTPGPPTI HEIVDQIRAFGNGHNEYRTGLQRTPIVNSSNHISSEECRNSMNENARKEPKSPKEIIFKCPICMGPLVEEMSTMCGHIFC KECISASIAAQGKCPICRENVAKKDLIRVFLPSTN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 47 | 47 | - | – | |
| PANTHER | 24 | 194 | 171 | 1.6E-44 | – | |
| MobiDBLite | 31 | 47 | 17 | - | – | |
| Gene3D | 101 | 193 | 93 | 4.1E-17 | ||
| SUPERFAMILY | 137 | 190 | 54 | 3.53E-16 | – | |
| Pfam | 139 | 178 | 40 | 3.9E-10 | ||
| SMART | 140 | 177 | 38 | 1.9E-5 | ||
| ProSiteProfiles | 140 | 178 | 39 | 12.401 | ||
| ProSitePatterns | 155 | 164 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0002600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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