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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0002900 |
| Transcript ID | LotjaGi6g1v0002900.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetratricopeptide repeat-containing family protein; TAIR: AT1G04190.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q5XEP2|HSOP2_ARATH Hsp70-Hsp90 organizing protein 2; TrEMBL-Plants: tr|A0A151U2M8|A0A151U2M8_CAJCA Heat shock protein STI; Found in the gene: LotjaGi6g1v0002900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:653210..661049) extracted from Lotus japonicus Gifu genome v1.2.
TCGATGGCAGAGACGAAAGAAGGATCAGGTTCGGAGTTGTCTCTGAAGGATCAGGGCAACGAGTTTTTCAAGTCAGGCAA ATATCTGAAAGCTGCAGCACTCTACACTCAAGCCATCAAGAAAGACCCTTCAAACCCCACACTTTACAGGTACGCTACGC TACCCTTCAACTTCAATCAATCTATTACGCTTTTCTCGATCCAACTTTTCTGTTTCGCTTTGTTTTATTTTTATTATCAT TATTAGTTTAGCTTTGTTGTATTTTTCAGTTATTATAGAGTTTGAATGCATATGCATAAACATCTTATCCTGATGTGTTT TGTGTAAATACATTGTATTGTTTGCCAGTAATCGTGCTGCAGCATTGCTTCAGTTGGATAAGCTTAATAAAGCTCTTGAT GATGCTGAAATGACAATCAAATTAAAACCCCAATGGGAAAAGGTAAATAAATGCTCATCAAATTTTCTTCATTGTTGGAA CTCTTGCATTGCAATTTTGTTTGATGCTTATTGAATATATATATGTCCAGGGATATTTCAGGAAGGGAAGCATATTGGAG GCCATGAAACGATATGATGATGTATGTATTATTTATATAACTGCCACTTGAAGCTGGGTAATCTGCTAAGTAATTGGGTT TTGTATCCTAATACATCTATCTGTTTATGTGAATATTTGTAGGCATTAGCTGCCTTTCAGATAGCTTTGCAGTATAACCC ACAAAGTCAAGAAGTGTCAAAAAAGATAAAGACGATAAACCAACTAGTCAGAGATAGCAAGCGAGCTCAAGAATTGGAGA ATATGAGATCTAATGTTGACATGGCCAAACATTTAGATTCATTGAAACCCGAAATGGTTAGTATTCTTGTTTTCTGGTTC TATTCCTTGTAGTGCCCAAAGGGCATAATGTGCTATGTTAGATTTTCATTTTACTCACATCCCCTGAGATTGGACTCAAT AACACAAACATCCCCTCCATTTTGTAAAAAACACTAACCTCCCTTCTGTTAGTGAACGTTAAAGAGTCATTAACTTTTAA AAGAAAATGTGTGAGGTTCCCTTCAGAAACCCTTTACTGCTTCTTCTCTCATTGACTGTTTCTTATTTCCTTAGTTACCC ATTTTCCCTTCTGCATCTTTTTACTTCATTACCGCCTACTGGTTCTCTTAATAATTACATCGTGTATAATGATATGAATA AAATATACAATTCAAAGGAAACAACTGAACTCCCATAATTGCTTAATATAATGAAAAAGTGGAAATTCCCAACAGGATTC TATTTGGCTAATTTAACATTGTCCTAGGCTTCAAAGTGGAACTTGAATACTCTTGAAGTAAAGTTCCAAAATGTAAAGAA AGCCCCGCTACATGATACTCCTCAACTAGTCACTTTGCTTCTTCACAGCTCCGGTCACTGGTCTAAGTGGTACAAGTGAC AACTCTTCCATTTGTTTTAACATCTCTGGTAATTTGCTGCAAGATAGTGCTTCATGTTACGAAAGTGTAAATTGCAATAC CAAAAAAGACTTGAGGCATACTTATTAACATTTGTTCAGAAAAATAAATGAAGAAATGAGGGGATTTGGTAAAGTGGCCT TTTTTTTCCCACCCTTTGCTATTGCCTTCTTTACCTCAGTTATTATGCCTTGCATTGCAGCATTGTGTTTCACCCTTGGG TCAGGTAAATCAACAAACACATTTACAGAGACATAGTCACATAAAACGGTGACCAAGCACAAATATCTCATCCAATCTCA ACACCACAATGCACTAATTTAATTTTCAAAAAGAAAGACAAAATGGTGTCAATCTTAAATGCTGGGGAGTGAATCGAGAA CTTCCTTTCCATGGCTGAGGCAGAGGGAAACGTTGCATTGTATGTGTGGTGTGGCTCGTTGGAAGGAAGTGTTGCATTCG ACATTCGTGAATTAAAAGAGGATGACGGCAACTGGATCTGTTAACTAACTGTTAGTATAAGGGGTAGGATTTGTAATCTA ATTAATAAAATAAGGGTAGTTAGTGATTAGTGAAATGATAGAGGGGTACTTAGTATTTTATTGATGAATCTCAGGGGAGG TGAGTGTAATTTTCCCTTTTCTTAATTATAAAGGGTGTGGAAGGAAGAGAATGGAAGAAGAAATTCAGGGATAGAGACAA TAAGGAGGGAGATATACAGAAGGCAAGGTGAATAAGTACGCTGAGGTGATGGAGAAACAGAAGTCTAAAACAATTTCTAT TCTCAAAGAAGCTCTAGAGTATGAAATTCATTCATAGCTATCCTTGTATAGGCGAAGTGAGCTTGATAACCAAACAACCT TTGGTTAATAAAGTTTCAAATAATCCAAATTTATTAAAAATCTCCTTAATAATACCCAAACTACAAGTAAATCAATATCA ATATAATCACCATAAAATTATCGCAATAAATCCCTATTACTGTGAATATATGCTGCCATCCCTTTTTCTACATCAATTTC CCTTCATTGTTTAAAATTTGTCTAGTTGAGTTTTTCGTTATTCAACTTTTAAAGGAGTTTGCTGTTAGGATAATTTAAAT ATAGAAGAGAAGTGAAAAAAAAGAAGAGAGATATATGAAACTCATTCTTAATGGATTCACAAGGAGAACCTTCTTTCCGA GGGTGAAACCCTTCCAAGGGGAAATCCCTTTACAATTCCAATACTTCAAAACATAATCCGAACCTAATGAGAACTCCCCT ATTTATAAATATTCTAACATAACTATCCTATCTTCCAATAACAGAAAATATATCCTAATAAATAATACTCCTAATAACAG AAAATATATCCTAATAGTTAATACTTCTAATAACCGAAAATATATTCTAATAAATTTCAATATTTTTTATCCCTAACAAC ATGAATACATTTCTAACACGCCCCCACATGCAAGAGCCCATTGGTCTTGAAGCATGGACAATGCACAGGCCAACCTTGTT CCAAAATTCAACTTTTTATTAGAATAACGGGGATTGAACTCTAGACCACCTTGGTGATAAAGGATTTGATACTATGTGAT GAGTGATGACAACTATCCCGAAAGCTTAAGTTGTTGTGTGGAGACACATGAATGGTTTTACATTATATTTCTAACAAGCA TGATCTCAGACTCTTTCTCCCATAGCAATGCAATCTTCACAATATCCACAATATTGGTCATTGGTATCTTAGTTCTTCCT TGGTTAGTTCCAATTTTTACCTCATTGCTATGAAGAACCCATAAAGGCATAGACTACTTTGTGATGCAGGAGCAAATTAA TTATGAATTTATTATTTTTAGTATTTTTAAATATATTTAGGATCATTCCGAATCTATTCTGTTTTTAATTAAGTTTAGGA TCAATTTGTTAGGATTTGTTATTTTTAATTACTTTCTAATTGAGTTTAGGATCTTTTAGTTAGGATTTTCATTATTTTTA GTTTCATTAGGGTTTTCCTATTTCTCTATTTAAGCACGTGTAAGGCAATAGCCTATTCAGTTTATTATTGATAATCAAAT TTGAGATTTTTCTCTCTTTACTGGTGGATTCCAGAGTTATCTTTTTAGGGTTCAGTGCTTGCTAACCCTTACTTTCTGGT GGATTCCAGAAACCTTTTCTTTTAGGATTTGCGCTTGCAATCCTAGTACGACTTCCGCTGTATCACTTTGTCGGTAGGTA TTATGCTGTGTGGTGCCCATGGTAGTTAAAATAAAGGCTCGGATTGTACAATCATGATTCTGCATGTTCCTCTGGCCTCT ATGAGAAAGTGTGTCTGGACAAGGGTAGCGCATGAGAGACCCGATTGATTGACCTCAGACTGTCGGGAAGGAGCTGAGCT AGTCGAGCTGAGGCCGATGGTGGGGTTAGCAGTTGGTTATGGCGATTGGTGGCAGTGGCGATTGGCAGAAGACTGCAGAG GTGGACAGAGAAGACTGTAGAAACCTGCCAGAATTAGATACAACAGTGAAGGAGGTTAAAAAATAAGAGAGATGAGTCAT ATTTTGCAAAATATCTTGGCATCGAGGGTTAGTGTGTCCACCGGGTAATCACGGATTAGGATTGTCTCTCGTCAGACTCT TGATACCATGTTGAGAAAGAGGAAACAAAAGATATAGATTGAATCGTGTAAATTATGCGATGGAGTGAGTTATATATAAT ACACGTCACTAAGTCAAGATTCCTAGTTTCCCCAATTAGGACGATTGCAAAATAATATGCACCATATAATTTCCGTATTT ACATTATTTCTGACGGAGTCCGTATCTGAAATTATTTTCATTTAATAATCTGACGGAGTACGATCAATCTATCTTTGTCT TTCTTTTGGTACCGGTGTAACATTGCATTAGATTGTATGTTATACCATGAAGAGCTATTAAGAAGTTAAGTTCAAGGTTG AAGAGATGAGAAAGTTACAATAGAGGAATGAACATATCAGACAAGATAGGATTAAGAATGAAACCTTAGATGGAAAGTTA AGATATTACCAATTGTAGATAGAAATGGTAAAGTATTGCCTTACATTGTGTCATTGACTATTTATATATACAGAAATCCT TATTGTTATAGAAGGGTCTGCAAAGGAAATCAAACGAATTGGTCTGATTGGTTACATTTCCTAAAAATGTGGCATCTTGA CCTTGTATTTATTCAAACAACAAATCATAAAATGACAGGTTAGCCTTCTTGCATTTCGTCAAAAAACATTTCGTAATGCA TAGCATCTCTATTATATATATTGTCAAAAGTCAAAACCAAACTGCGACATGGAACGACTGGCACTAAACATTATACTGAG ATGGTTGCTATATTGTAGATTATGTTTACACGTAATTTATACGGAAAATATATAAATGCTAAAAATAAAAAAAAAATGCT GAAATTAAAGACATTCATATTAGTAATAAGAAATCATAGTGAAACAATCTAGATACAATCAAAAAAATCTAAGTCATAAT TAACAAGCTAATAGTAGGGGGTTGGGAAGTGCAAGTTATCAAGGAAAATGGAACATCAGAGGTCTTGAAGGTGGGAGACT GAAAATAGAGAGCTAGTGCAAATGAAATTACACAAACAGTAAAAATAGAGTTCATAGGTATGGTCAATGTGCTTAGGGAG TGGAGACTCTGTAGTCTGTTTTTCATGGGGGGTGGGGGGTGGGATTGGGGATGCTTTAGGGTTAAACCCTAAGGATGAGT GGGCATACTATGAAAATGAAAAAAAAAAAAGCCTTAAAACTAGTGGGACACGCAGAAATGGGGTAACTTGGGGGGAGGGG TTCCTCAACCACTGGTTTTGAATCGAAACCACAGAAATAGTGGTAATTCCTTGATAGCATGGATCAAATGAGACTACCTA AAAAAATGGTGGCTGAAAATTGAAGCTGTGATGTCAAAACATGATGTAATGGCTGACAGATATCCCGTGAAGTGACTTCG CAGCACAGTTAACTACCTTGATATATGACACTTACGCGGTACGTGAGATTTCCCGTCTCATGTTATGATCTTGCAATTAA CATTTCTACCCCAGCCCCCTTTTATCCAATCCAAGGTAGGATCTCCTATATTGACAACCTAGGTGTTGCCAGACTGCTAG TCATTAGATGGCAATAATCCATTGGATATCCACTCATTCAGAGCAAAACCGTGCGTTCATACATTCAAATTTAATACCAA TGACTTCAATTCTAAAAAATGGGAAAAAGGACATGAAAATTGAACCCAGAATGTTAGAATCAGAAATATATCATATATCA TTCTTTTTTTCCGTATTTTGCTATTATATTTTGTTTTATCTCTTAATTCCATGTTAATTTTGGTGTTTGACCGAGCGCAA TGGTGTCGAGTGGTCCATATAGCTGATCTCACTTAGAGGGATAGGACTTTTGTTGTTGTTTGTTTTGACTCCTCTATAAT TATATTTTTAAGTTAACTCACTTTTCCATATACTCATACATCATGTTTAAAATTTCCAAAGTGAGGATTGAAATGATCTC CCTTATGCAGTCTGGAAAGTATGGATCTGAAGAATGCTGGAAAGACATATTCGTATTCCTTGTCGAGACTATGGAGACTG CTGTAAAATCATGGCATGAAACTTCTTCAGTGGATGCTAGAGTTTACTTTCTTCTTGATAAGGAGAAAACACCGACTGAT AAATATGCCCCGGTTGTGAATATTGATAAGGTATATGTTTTCTTTGATCAATCTTAACATAATTTTCATTGTGGCTCACT TGTTTTTTTATTGCTGTTTCCTTTCTTTTATGGGCTTGAAAATGTGATTTATATAATCTAGGTTAAATATATCTGCATTT TGGGCTGGTCTCTGTTGTTGGCATATTCTAAATTTTGATCCTTTTACTTTTGTATCATTTCATCTGCTAGGCCTTTGAAT CACCACATACACACAGCAGCTGCTTTTCATTTCTAAGGCAGTATGCTGAGGAATCTTTCTCCAAAGCAGCCTGCTTAGTG ACACCCAAATCCAGCATTGCTTATCCCCAGGTAACTTATGATTTCTTAAAGCATTATAGATAAAAGTGAACCTTCTAAAG CATTAAAAATTTCCAAATTTTATTGGAGGGTTGGAGTCCCGCTTTTGAGACATCACATCTTCAACTGGGCATTCCACTTT TGACCCATTTGTACATCTTCAACAAGGTTTATAACGTTGTGTTTCATGACAAAGAATCGGGAATAATTCTACTTAATACA GCATAGAACACACAAAGGAGGGTCTGCACCCCCTTTCCCCAAGGCTCAATTTCTTATGAAATGACTATTTACCTCTCCCT CTCAATTTGAACCCTACTTCATTCACTGGGAAAGGTAAAAGCGCAAATGATATTCTTGATGCATAGTGATGTATGTGGGC CCATAAGCACAATTGTGAGGGGTGAATTTCATTATTTCATCACATTTACTGATGACTTTAGTAGATATGGATTTGTGTAT CTAATGATACATAAATCAGAATCCTTTGAAAGGTCCAGAGAATTTAAGAATGCAGTTGAAAACCAAATTTGCTAGACAAT TAAGGCATTTCAGTCAGATCAAGGTGGATAATATTTGAGCCAAGATTTTGACCACTATCTAAAAGACTGGGATTATTTCT GGGATCATTTCTCAACTCACTCCCCCATAACACAATGGAATGTTGCATCTGAAAGGAGGAATTGAACCTTATTGGACATG GTTCGATTTAAGATGGAGAAGAGTGTCAACCTCGACACTTGATCCTGCAGAAAGTGTGCAAGCGCTTACAGCAGCTGAAG CTCCAAAAACAAAGAATGGAAGTGACTATGTTCTAACAGAGTTATCTCAACAAACTATATCCTAACAGATATCTCAAGTT CTCAACACTTCTTATTGGGACCCCAATGGGCTCTCCACTTGGCCGTAGGTGGGCTAATATCACCTCCATTGTATCGGTTA TTCTTTTGAACTTGCAAAGACGGGGATATCTGATCAATGTTCCTTTTCAAGAGATCAACTAAATAAACAGAGTCATTTCT ATTATTTAGGTTAATTGTGTGGTTCCAATTCAATTGACTGCTGCTCATTCACTTAGAATTGCGAATTCTGAATCACCAGA ATCTCTTAAATGACATTCTATGTCTGCAGGTCTGGAAAGGCCAAGGATCAAGGAAGTGGAAACATGCACAAAGTGATGGT TTCTTTGTTCAATTTGAGTCACCTTCCCTGCGTAAGCTGTGGTTTATTCCCAGTTCAAATGAAAAGGGACAGATTTTGTG CAGGTTTCTTTCCCATCTCTTGCTTGCTCGTATTTACTTAATATGAATTTTGTAATTTATGATGGGCAATATTATGGTGA
CDS sequence (LotjaGi6g1v0002900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGAGACGAAAGAAGGATCAGGTTCGGAGTTGTCTCTGAAGGATCAGGGCAACGAGTTTTTCAAGTCAGGCAAATA TCTGAAAGCTGCAGCACTCTACACTCAAGCCATCAAGAAAGACCCTTCAAACCCCACACTTTACAGTAATCGTGCTGCAG CATTGCTTCAGTTGGATAAGCTTAATAAAGCTCTTGATGATGCTGAAATGACAATCAAATTAAAACCCCAATGGGAAAAG GGATATTTCAGGAAGGGAAGCATATTGGAGGCCATGAAACGATATGATGATGCATTAGCTGCCTTTCAGATAGCTTTGCA GTATAACCCACAAAGTCAAGAAGTGTCAAAAAAGATAAAGACGATAAACCAACTAGTCAGAGATAGCAAGCGAGCTCAAG AATTGGAGAATATGAGATCTAATGTTGACATGGCCAAACATTTAGATTCATTGAAACCCGAAATGTCTGGAAAGTATGGA TCTGAAGAATGCTGGAAAGACATATTCGTATTCCTTGTCGAGACTATGGAGACTGCTGTAAAATCATGGCATGAAACTTC TTCAGTGGATGCTAGAGTTTACTTTCTTCTTGATAAGGAGAAAACACCGACTGATAAATATGCCCCGGTTGTGAATATTG ATAAGGCCTTTGAATCACCACATACACACAGCAGCTGCTTTTCATTTCTAAGGCAGTATGCTGAGGAATCTTTCTCCAAA GCAGCCTGCTTAGTGACACCCAAATCCAGCATTGCTTATCCCCAGGTCTGGAAAGGCCAAGGATCAAGGAAGTGGAAACA TGCACAAAGTGATGGTTTCTTTGTTCAATTTGAGTCACCTTCCCTGCGTAAGCTGTGGTTTATTCCCAGTTCAAATGAAA AGGGACAGATTTTGTGCAGGTTTCTTTCCCATCTCTTGCTTGCTCGTATTTACTTAATATGA
Protein sequence (LotjaGi6g1v0002900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAETKEGSGSELSLKDQGNEFFKSGKYLKAAALYTQAIKKDPSNPTLYSNRAAALLQLDKLNKALDDAEMTIKLKPQWEK GYFRKGSILEAMKRYDDALAAFQIALQYNPQSQEVSKKIKTINQLVRDSKRAQELENMRSNVDMAKHLDSLKPEMSGKYG SEECWKDIFVFLVETMETAVKSWHETSSVDARVYFLLDKEKTPTDKYAPVVNIDKAFESPHTHSSCFSFLRQYAEESFSK AACLVTPKSSIAYPQVWKGQGSRKWKHAQSDGFFVQFESPSLRKLWFIPSSNEKGQILCRFLSHLLLARIYLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 7 | 161 | 155 | 3.1E-41 | ||
| ProSiteProfiles | 11 | 112 | 102 | 23.846 | ||
| SMART | 11 | 44 | 34 | 0.021 | ||
| ProSiteProfiles | 11 | 44 | 34 | 9.086 | ||
| PANTHER | 13 | 297 | 285 | 2.9E-96 | – | |
| SUPERFAMILY | 13 | 122 | 110 | 1.33E-36 | ||
| PANTHER | 13 | 297 | 285 | 2.9E-96 | – | |
| Pfam | 18 | 58 | 41 | 1.8E-10 | – | |
| ProSiteProfiles | 45 | 78 | 34 | 7.375 | ||
| SMART | 45 | 78 | 34 | 0.074 | ||
| Coils | 51 | 71 | 21 | - | – | |
| SMART | 79 | 112 | 34 | 6.4E-5 | ||
| ProSiteProfiles | 79 | 112 | 34 | 10.178 | ||
| Pfam | 80 | 111 | 32 | 1.2E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0002900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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