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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0005900 |
| Transcript ID | LotjaGi6g1v0005900.5 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine/threonine-protein phosphatase; TAIR: AT2G39840.1 type one serine/threonine protein phosphatase 4; Swiss-Prot: sp|P48489|PP1_ORYSJ Serine/threonine-protein phosphatase PP1; TrEMBL-Plants: tr|G7I5D1|G7I5D1_MEDTR Serine/threonine-protein phosphatase; Found in the gene: LotjaGi6g1v0005900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:1215721..1218217) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAACGAGAATTTCTGGATGCTATCATCAATAGGCTGCTTGAAGTGAGAGGGAGACCTGGGAAGCAGGTGCAGCTTTC AGAGACAGAGATCAAGAAGCTTTGTATGGTTTCTAGAGATATCTTCCTGAAGCAACCAATGCTGTTGGAACTTGAGGCAC CAATTAAGATATGTGGTATGTATTTGCTAACTCCCATGTTCTGTTTTACTTTTAGAATTCACTTCTTAGTTTCTTGCTCA ATTTTTAAGTATATGGCAATTGGTTTTTTATGATGTTTCTGATGATGTTAATGAGTTTTACATCCAGTTTTAAGTTTCAT AGAACATAATCTAGTCTAAGGTTGGGTTAAATTATACCAAAATGGAACAACAATTAAATGAACATCCAGTCTTTATTCTA ATTTGAATAAGAAGAATGGTGTTTCTAATGGTTTCTCCTAATGTTTTTATTGGGTGAAATTTTTCTTTTGTTTTCTTTTT TGAAACTTAGGAGGGTATTTAATTACTGAAGTGAAGATGAAACTGAGAAGATAGGAAGCATTAATTGGCTAAACATGAAT GTTGTAGGAACTAGGATATTACAGTGATTGCAGAGGATTACTATGTTTATTCTAATTAGAAGATCTAGTTTCCAAGACAA CCTCTAAGAAATGGGGATACCTTACCATGAGTTGCATTTTATATTTTTGGGAAAGTTGATTTGCTCTTCTCATTCTTGAT TGTTGTACATGTTTTGAATCATCCACTTTAGTTTACTTGATTGTTGCAGAAAACTATTGTCAGCTAAATAGAATTTCGAG ATAAACTTTTTAGTTGATCATAATTTGTGTGAAATTTATATTTTAAGGTATTTTTTGAGATATGAATTCAAATCTTTATA AATTTCAATTATGAATGTGAGAATTTTTAATCTAAACTTGTATTCACTATGTTATGTAGATATCATATTGCTTTTGTCTC GTATAAAAAACAAAAGGTTTTATTAATATAAAGTAGGAACTAGTATCATTCTTGATTCAATTCAATATGTTACCAGGAGA TATCCATGGCCAATATGCAGACCTTCTGAGACTCTTTGAGCATGGTGGATTCCCTCCTCGTTCCAATTACTTGTTTCTAG GCGATTATGTGGATCGTGGAAAGCAAAGTCTTGAGACAATATGTCTTCTCCTCGCCTACAAAATAAAATATCCAGAAAAT TTTTTCCTTCTTAGGGGAAACCATGAGTGTGCTTCAATAAACCGTGTCTATGGATTTTATGATGAATGTAAAAGGAGATT CAATGTCAGGATCTGGAAAACATTTTCAGATTGTTTCAACTGTTTGCCTGTGGCGGCTATCATTGAAGATAAGATCCTGT GCATGCATGGTGGACTCTCCCCTGAATTGCATAGCTTAAATCAGATTAGCATGTTGCCACGTCCAGCAGAAGTTCCAGAA ACTGGTCTGTTATGTGATCTCTTGTGGTCTGATCCTAGTAAAGAGATTCAGGACTGGGGAATGAGTGAACGTGGAGTTTC ATATACTTTTGGTGCTACCAGGGTTGCAGAGTTTCTTCAAAAGCATGATCTTGACTTGATTTGTAGAGCGCACCAGGTTA CTCATAAACTTTATAAGTGTACGGTAGAAAAACACGGTGAAGTTAAAATCACGCTAGACAGAAGGAAAAGCTAAAGGAAG TTGTTTTTCCTCACCATGATTTAGACACGCCGTGATTTTCTTATAGTGTATAGAAACATGCCTGACGTCTTAATATGGAA TTATATGACAAGAGTTTAAGTATATGACTCATGAACCAACTATCCTAAACATTTAAATTGTTGGAAAAAGAACACATGAA TTATTTTATATTATATTTCTAACATGACCTCCCACGCAAGAGCTCATTCGGCTTGAAGCATGGACAATGCATACACTACC TTATGCTGAAATTCAACTTTTTATTATATTTGTAGGAAACAAGAATCAAACTCTACATTACTTATAAAAACTCTAATACC ATGTCAAAACCCAACTACTTTAAAATCTTAAGTTGTTGGGTGAAGGACATGTGAATATTTACATTATATTTCTAACAATA TTTATTACTTCTGATAGGTGGTTGAAGATGGATATGAATTTTTTGCTAATAGACAACTTGTGACTATCTTTTCTGCTCCT AATTACTGTGGAGAGTTTGACAATGCTGGGGCAATGATGAGTGTTGATGACACACTTATGTGCTCTTTTCAGATATTAAG GCCTGTGGATCATAAAAGGCCCAAGTTTGGTTTTGGGAAAACAACTAGATTCAAGGCTAGTACTCCAAAAGAATCTTGGT ATTTTTAGTTCTTGAATCCAGAATTTTGACATGTTCAGTAAATGGTTATATGATATTTTGGTAGTTTCATATTATTGCAA ACTCCACATAGGGTGTGATTACCTACTAGCATTACTTAATTCAGGAAAAAAATGTGTTGGCTCTCAATTTTCAGTAGGGA ACTGTCTAATACTCTAA
CDS sequence (LotjaGi6g1v0005900.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACGAGAATTTCTGGATGCTATCATCAATAGGCTGCTTGAAGTGAGAGGGAGACCTGGGAAGCAGGTGCAGCTTTC AGAGACAGAGATCAAGAAGCTTTGTATGGTTTCTAGAGATATCTTCCTGAAGCAACCAATGCTGTTGGAACTTGAGGCAC CAATTAAGATATGTGGAGATATCCATGGCCAATATGCAGACCTTCTGAGACTCTTTGAGCATGGTGGATTCCCTCCTCGT TCCAATTACTTGTTTCTAGGCGATTATGTGGATCGTGGAAAGCAAAGTCTTGAGACAATATGTCTTCTCCTCGCCTACAA AATAAAATATCCAGAAAATTTTTTCCTTCTTAGGGGAAACCATGAGTGTGCTTCAATAAACCGTGTCTATGGATTTTATG ATGAATGTAAAAGGAGATTCAATGTCAGGATCTGGAAAACATTTTCAGATTGTTTCAACTGTTTGCCTGTGGCGGCTATC ATTGAAGATAAGATCCTGTGCATGCATGGTGGACTCTCCCCTGAATTGCATAGCTTAAATCAGATTAGCATGTTGCCACG TCCAGCAGAAGTTCCAGAAACTGGTCTGTTATGTGATCTCTTGTGGTCTGATCCTAGTAAAGAGATTCAGGACTGGGGAA TGAGTGAACGTGGAGTTTCATATACTTTTGGTGCTACCAGGGTTGCAGAGTTTCTTCAAAAGCATGATCTTGACTTGATT TGTAGAGCGCACCAGGTGGTTGAAGATGGATATGAATTTTTTGCTAATAGACAACTTGTGACTATCTTTTCTGCTCCTAA TTACTGTGGAGAGTTTGACAATGCTGGGGCAATGATGAGTGTTGATGACACACTTATGTGCTCTTTTCAGATATTAAGGC CTGTGGATCATAAAAGGCCCAAGTTTGGTTTTGGGAAAACAACTAGATTCAAGGCTAGTACTCCAAAAGAATCTTGCTAC TAG
Protein sequence (LotjaGi6g1v0005900.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEREFLDAIINRLLEVRGRPGKQVQLSETEIKKLCMVSRDIFLKQPMLLELEAPIKICGDIHGQYADLLRLFEHGGFPPR SNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRVYGFYDECKRRFNVRIWKTFSDCFNCLPVAAI IEDKILCMHGGLSPELHSLNQISMLPRPAEVPETGLLCDLLWSDPSKEIQDWGMSERGVSYTFGATRVAEFLQKHDLDLI CRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDDTLMCSFQILRPVDHKRPKFGFGKTTRFKASTPKESCY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 315 | 315 | 1.5E-208 | – | |
| PANTHER | 1 | 315 | 315 | 1.5E-208 | – | |
| Gene3D | 2 | 305 | 304 | 4.2E-134 | ||
| CDD | 5 | 294 | 290 | 0.0 | – | |
| Pfam | 6 | 52 | 47 | 6.6E-22 | ||
| SUPERFAMILY | 17 | 299 | 283 | 1.19E-117 | – | |
| SMART | 26 | 296 | 271 | 6.5E-164 | ||
| Pfam | 54 | 245 | 192 | 4.4E-40 | ||
| PRINTS | 54 | 81 | 28 | 6.9E-95 | ||
| PRINTS | 83 | 110 | 28 | 6.9E-95 | ||
| PRINTS | 116 | 140 | 25 | 6.9E-95 | ||
| ProSitePatterns | 117 | 122 | 6 | - | ||
| PRINTS | 150 | 176 | 27 | 6.9E-95 | ||
| PRINTS | 179 | 206 | 28 | 6.9E-95 | ||
| PRINTS | 236 | 256 | 21 | 6.9E-95 | ||
| PRINTS | 258 | 274 | 17 | 6.9E-95 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi6g1v0005900.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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