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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0006100 |
| Transcript ID | LotjaGi6g1v0006100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ring finger protein, putative; TAIR: AT1G04360.1 RING/U-box superfamily protein; Swiss-Prot: sp|P93823|ATL1_ARATH RING-H2 finger protein ATL1; TrEMBL-Plants: tr|A0A061EMD3|A0A061EMD3_THECC RING/U-box superfamily protein; Found in the gene: LotjaGi6g1v0006100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:1261405..1262669) extracted from Lotus japonicus Gifu genome v1.2.
TTGAATTTAGAGCAAAACCATGGTCTCTTTCACTTAGCGCATTCAACATCCTATAAAATTTTCAGGGCAAGTGCCAATTG TTCTATCTAAACTCTTTTCTTGTCAAGTCTTAATACTCTTCTATTTAGAATCTGGTATGGATTTTGCAAGCAGAAGGCAC TTGATCAATGTGTCACGTACGCCATGTATGTCACAAGCACTTTCCCCTATGGCATTTCATGGGGATGTGGTTGTGCATCC TTCTAGTACTACAAATTTTCCCTTGATACCAATCATTGTAATAGGAATGTTGGCCACATCTTTCTTTCTTATGGGCTACT ACATCTTTGTGGTCAAGTGCTGCCTCAATCGGAACCGTGTTGATCTTGCAAGAGTTAGAAGATTTTCTCTATCATGGCAA CGTGAAGAGCCGTTTGCATCAGAGCCTAGAGGATTGGAGGAAGCAGTGATTCGGTCAATCCCAGTGATTCATTACAAGAC TGAAAGAGACAGAGACTTCGGTGGTGAGAGAAGCATTTGTGAATGTGTAGTTTGCTTGAATGAGTTTCACGAAGATGAGA AGCTCAGGGTTATACCAAACTGTGGCCATGTCTTTCACATTGATTGCATAGATATTTGGCTTCAAAACAATGTGAGTTGC CCTCTTTGCAGAAGATGCATTTTCTTGACAAGCCAAACCCATGTTGACCAGCTACTCATGACTCCAAGACCTTCCCCTCA ATATCAAAGCCAAAATGGTGATAACCTCATTGGTGGTGATGGAGATTTTGTTGTGATTGTATTGGATGAGGAACATGAGG GTGAACAAAACTTGCAAGGAAGAAAAGAAAGAAGTAAAGACTTGGAGTTGCCAGCAGGTCCTATTGGTCCTTCACAAAGG AAGTTGGAACAGAGAATTCTGAAGAAAAAAGCAAGGAAGCTTCATAAAATGATCAGCATGGAGGATGGAGCCAAAGATGA TGAGTTTTCAGTTCAACCCATTAGGAGATCTTTCTCCATGGAGTTATCAGTGCATACATAAGTGGACACCAGGACATGTC CATGAGGTCTGTAGACTCTGTTCCATTGAAGCTTGTGGTTGTGGTGGTAAAGCAAAGAGAACATTCCTCTCCTTTGGATA GGGGAGTAGATCTAGAAATACACTGTTTTGGCTGTTATTTTTTAGACCCTTCAAAGTATTTTGTGTCCTCACCTCTTTTC TTTTTAGATTATATATGTTTAGTAGACCGAGGATATAAATTGAATAGGACATAGGAATGTTGAAA
CDS sequence (LotjaGi6g1v0006100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTTTGCAAGCAGAAGGCACTTGATCAATGTGTCACGTACGCCATGTATGTCACAAGCACTTTCCCCTATGGCATT TCATGGGGATGTGGTTGTGCATCCTTCTAGTACTACAAATTTTCCCTTGATACCAATCATTGTAATAGGAATGTTGGCCA CATCTTTCTTTCTTATGGGCTACTACATCTTTGTGGTCAAGTGCTGCCTCAATCGGAACCGTGTTGATCTTGCAAGAGTT AGAAGATTTTCTCTATCATGGCAACGTGAAGAGCCGTTTGCATCAGAGCCTAGAGGATTGGAGGAAGCAGTGATTCGGTC AATCCCAGTGATTCATTACAAGACTGAAAGAGACAGAGACTTCGGTGGTGAGAGAAGCATTTGTGAATGTGTAGTTTGCT TGAATGAGTTTCACGAAGATGAGAAGCTCAGGGTTATACCAAACTGTGGCCATGTCTTTCACATTGATTGCATAGATATT TGGCTTCAAAACAATGTGAGTTGCCCTCTTTGCAGAAGATGCATTTTCTTGACAAGCCAAACCCATGTTGACCAGCTACT CATGACTCCAAGACCTTCCCCTCAATATCAAAGCCAAAATGGTGATAACCTCATTGGTGGTGATGGAGATTTTGTTGTGA TTGTATTGGATGAGGAACATGAGGGTGAACAAAACTTGCAAGGAAGAAAAGAAAGAAGTAAAGACTTGGAGTTGCCAGCA GGTCCTATTGGTCCTTCACAAAGGAAGTTGGAACAGAGAATTCTGAAGAAAAAAGCAAGGAAGCTTCATAAAATGATCAG CATGGAGGATGGAGCCAAAGATGATGAGTTTTCAGTTCAACCCATTAGGAGATCTTTCTCCATGGAGTTATCAGTGCATA CATAA
Protein sequence (LotjaGi6g1v0006100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDFASRRHLINVSRTPCMSQALSPMAFHGDVVVHPSSTTNFPLIPIIVIGMLATSFFLMGYYIFVVKCCLNRNRVDLARV RRFSLSWQREEPFASEPRGLEEAVIRSIPVIHYKTERDRDFGGERSICECVVCLNEFHEDEKLRVIPNCGHVFHIDCIDI WLQNNVSCPLCRRCIFLTSQTHVDQLLMTPRPSPQYQSQNGDNLIGGDGDFVVIVLDEEHEGEQNLQGRKERSKDLELPA GPIGPSQRKLEQRILKKKARKLHKMISMEDGAKDDEFSVQPIRRSFSMELSVHT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 42 | 42 | - | – | |
| PANTHER | 20 | 292 | 273 | 2.7E-87 | – | |
| TMHMM | 43 | 65 | 23 | - | – | |
| Phobius | 43 | 64 | 22 | - | – | |
| Phobius | 65 | 294 | 230 | - | – | |
| Gene3D | 87 | 176 | 90 | 7.8E-20 | ||
| SUPERFAMILY | 129 | 178 | 50 | 4.54E-19 | – | |
| Pfam | 129 | 172 | 44 | 3.7E-12 | ||
| CDD | 129 | 172 | 44 | 3.76701E-15 | – | |
| SMART | 130 | 171 | 42 | 1.7E-7 | ||
| ProSiteProfiles | 130 | 172 | 43 | 13.094 | ||
| MobiDBLite | 222 | 237 | 16 | - | – | |
| MobiDBLite | 222 | 243 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0006100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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