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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0011800 |
| Transcript ID | LotjaGi6g1v0011800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PHD finger protein ING; TAIR: AT3G24010.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|Q9LIQ6|ING1_ARATH PHD finger protein ING1; TrEMBL-Plants: tr|I3RZ83|I3RZ83_LOTJA PHD finger protein ING; Found in the gene: LotjaGi6g1v0011800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:2270618..2274467) extracted from Lotus japonicus Gifu genome v1.2.
TTTATTTATTTCATCACAAACTGTAATTGGGTTATCCTATTATCACCTCCTTGGAAGGAACTCAGGATTCGCGAGCATAT TTTCCAGAAACCCTAATGTCATTTCTCGAAGAATTTCAAGCCAGTAATTCACTATCAATTTCTACTTGGTTTCTCTTTCG TATTTCACAAATTTAGGGTTCGTAGTGTTCAATCATGCATTCAACGATTATTGCGTGTTTTTTCTGCAGATTTAGATTCT CTCCCCGTTATTCTTCAGAAGAAGTATTCATTGTTGCGTGACCTAGATAAGAGTTTACACGGTAATTCTAATTTCATAAT TTTCTCTTTGATCGAAATGGGAAAAACAATACAATTTTTTTGATAATTCTGTCTTGTGTTTATCAATTTTGTAATTTTCT GTGATGGTTAACTCAATGCTTTTGATCTTAGAATTGACTCATGTGATTCACTGGTATGAATATGATAATGGTTTTGATAA GTGGTAACCTGTAACTGGTTCCATGGAATTTACTGTCCTTTGTGGTGATGTTGTTGGTAGGAAACCATCACGATTCAAAG ACCGGTTGTTAGGATCAAATTTGTATGTTCCGTGCTGTATTTTTTGTGAAAGTAAACAATATGCGGTGTTTGTATCGGTC ATTTGATATGATATACAAATCCTTCATATGGGCATGCTCAGAAGTGTGTCTTTTTGTCTAACAAACTGTTATAGTTTTTA CTAAATAAAATTTTGCACTTGTCCACTGATATGTACATTTGTTAGACTGGACTCTTAATGTCTAATGGCAATTTGGGTAC TTCGTGTTCTGTTTTTTTTATCCGTATAACGGCTACAATTTAAAGCAGATACTGTGAAGACCTTGTTTTTGGTTAATTTG ACTGATCATGACCTATCATTGTTCTTTGGTTCCACAATAGTTCGAAAGCTTTTAGCTGTGCATGTTTGTAACTTTGTATC ACATCTTCAGTCTTGTTTGAGACTTCCAGGCAACATAAGCATTGTCATGTGTATGAGCAGATATTCAAAGGCAAAATGAA CAGCGTTGTCAACAAGAAGTTGAAGATATTAGGAGAGGAGTTAGGCTTGGAAATATCACACCTGATGTTTCGGCTATTAG ATTCTCTGATGAAGCACTTGATGAGCAAAAGCATAGCATCCGGATTGCTGATGAGAAAGTTGCTTTGGCCGTCCAGGCAT ATGATCTGGTAGTCTACTTATCTTGTTACATGCATTTTCGTAAGACCTCAGTTAATGCCTGGCTTTGGATAGATTTCCAT GGATGTTGATATTGTGGTTTTTTGCTTATACCTCCTTTGATATATAGTTAGATCATGTGTCATTTCAAACTCTGCTATTT TATCTTGCTTCTTTGCCACTTTTTGTCTTTTTGTGTTGTTGGTGGTTTCCTTTACCATCATCAGGTGTTCCATTGTCTAT GAAATAGGGGTACAGACATGTCTATCATATGATTTTAATTTTTTTCTTTATTTTCATTGTGTTCCACCCCATTTGCCTTT ACATTTTGAAAGATGTATAAAGGAGTTATTCAGACAAACTACTTTGTACAATTGTTTGGTTAGATAAATTTGGTTGAGTA ACATAATAATATATTGCATAAATTTTCATTAAAAGTAATGCAACCAGTTTTCTTGGCTTGTTGTATATGGATTATGATTT GTGATTCACAATTTTGTTGCAGGTAGATACACACATACAACAACTTGATCAGTATCTAAAAAAGTTCGATGAGGAGCTTC GGCGTGGTACTACCTTTTCTGTGTCACTCATAATCCAAATTTTGTTTGTATGAATAATTACTATTTTATTTTGATTTATG TCAGAAAGAGAAAATGCTGCAATAGCTGGAGTGCCTTCATCAGGTCCTGATGCTACGACAAAATCTGGAAGGGGTGAAAG TGGTAGAGGAGGACGAAAAAAGTACATAATCAGTAAATCTTAAAGGACTGTTTGTGATTCATTTTGTGATAGCTTATCAT TTATGTGATGCTTATCCTCATGCTTTTCAACTGTCGAGACCTTCAATACTGGTTTTTGAACTTACTGCCTCTTATGGTTT TCTGTTATATAAGCTGTTGATTGAAATGAGGGTCTTATTTAAAAACGGATGCTAGTCATTTGAAAATATGAAAACCAAGG TTAGCAAAACATTTGATGATAGAAAATTGATAAGCTTAGGGAATTCTTTTTCGGTCTCTTTTTATGGAAAGGCATTTCAG TATATCAGACTGGGTAATGAATAGACAGCTGTTAATAGGTTGCAGAAAGAAATGAACATTACTCTCCCATATTTTAATGT TGACTTTATCTTCACATAATGCTATTCAGGCTACTATGAAGGTTAAGAAATATGTGTGTTGGTAGAGGTTTAGTTATTGA TATCTGAGTTGACTATGCTATTACAGTAATACCCACATAAGTTGACATTTAACATGATTGCATGGTGCTTTGTCATACTC ATACGTGGTGAAACCGCAGATAGTCCCAATTCTTTGAGGATATGAAACCAAGATCCTCAAGTCCAAGTACTTCTATTCTG GTATTAAACCCTGGAAGTGGAAATTGTCAAAGCTGATTCTTATTTCCCAAACATATTTATCTTAATGATAAAATTTGGAA TCCTTATATCTGTTCTTTATAAAACATCAGAAGTTCTGTTTTATAATTCCTTGTAACTAACTACTTTAATAACACCAGCA GATTGCATTATAGTATATAAACAAAATTATCTTTGATACATCTGATATTAAGATTATGAAGTGAGGAGGTAGTATTTATT TACAATTTTATATTTCTCTTTTCCTTGTTTTTTTCCTGAGGGGTATATTTATTATTCATGTCTGGTACAATATCATAAAT TAGAAAGCAAGAATTGGCAGAAGCAATTACAAACTGATTGACATCGGTTGAACTTGCAATTTCAGATCTCGCCAAACAAC ATTGGCCGCAGCAGCTGCAGCTGCAACAGCAACGGATGCTCAACCCACATCTGTCAACCCAACTGGCATGGATTTAGATT TACCGGTTGATCCAAACGAACCCACATACTGTTTTTGTAACCAAGTTAGCTATGGAGAAATGGTTGCCTGTGATAACCCT GATGTATGTATTTACCTGTCCTTTTCTTATATTCATATTCATTTTGCATATATTCACATATTTTGATGATCTCTTTTAAA TACAGTGCAAGATAGAGTGGTTTCATTTTGGTTGTGTTGGTCTGAGAGAACAACCAAAAGGAAAATGGTACTGTTCAAAT TGTGCAGCTACAAGAAATCGCCGAAAAGGAAAATGAGGCTGACAGAAGAAAATATTGATGTTAAATTGACTGAGTGTATA TTCTTAATATTTTCTAGTTGGGTAGTTATTTTGCCTGATTTGTCAGGCCTTGAAACTTTGCTTCTGTAGCTTTTATTCAG GATAAGTTCCAGTGAATTTCTGTGTCAGTTTAGTCTTGTAAGTTGTAATCCATGTATAAAACAAATTTTACCAATTGCAG AAAAGACTTGTAATTATTTTAAGCTTTCTCAAGGTTCCGAAAATGTCACTATGTAGAATTTAGAAATACTACTTGTAACT TGTAAGAGTGTACCGCACACTTAACTACTAAAGGGTTCATTTTCATGGCTTTTTCTTTTTATGTAGGAACGATTAAGGGT GTAGATATGTAGATATATCCTCCAAGCTAATTGAGTAATGAGTACAACTAGGGGATTTACATATAACAGATGGAAGTCAG AATACCTAAATTCTAAATCATATGCATTTAATATGAGCGAAGGAGGGTATTTAAGGTGAAGCTTTCAACAGCTTTTCTGA TAGATAACTG
CDS sequence (LotjaGi6g1v0011800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATTTCTCGAAGAATTTCAAGCCAATTTAGATTCTCTCCCCGTTATTCTTCAGAAGAAGTATTCATTGTTGCGTGA CCTAGATAAGAGTTTACACGATATTCAAAGGCAAAATGAACAGCGTTGTCAACAAGAAGTTGAAGATATTAGGAGAGGAG TTAGGCTTGGAAATATCACACCTGATGTTTCGGCTATTAGATTCTCTGATGAAGCACTTGATGAGCAAAAGCATAGCATC CGGATTGCTGATGAGAAAGTTGCTTTGGCCGTCCAGGCATATGATCTGGTAGATACACACATACAACAACTTGATCAGTA TCTAAAAAAGTTCGATGAGGAGCTTCGGCGTGAAAGAGAAAATGCTGCAATAGCTGGAGTGCCTTCATCAGGTCCTGATG CTACGACAAAATCTGGAAGGGGTGAAAGTGGTAGAGGAGGACGAAAAAAATCTCGCCAAACAACATTGGCCGCAGCAGCT GCAGCTGCAACAGCAACGGATGCTCAACCCACATCTGTCAACCCAACTGGCATGGATTTAGATTTACCGGTTGATCCAAA CGAACCCACATACTGTTTTTGTAACCAAGTTAGCTATGGAGAAATGGTTGCCTGTGATAACCCTGATTGCAAGATAGAGT GGTTTCATTTTGGTTGTGTTGGTCTGAGAGAACAACCAAAAGGAAAATGGTACTGTTCAAATTGTGCAGCTACAAGAAAT CGCCGAAAAGGAAAATGA
Protein sequence (LotjaGi6g1v0011800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFLEEFQANLDSLPVILQKKYSLLRDLDKSLHDIQRQNEQRCQQEVEDIRRGVRLGNITPDVSAIRFSDEALDEQKHSI RIADEKVALAVQAYDLVDTHIQQLDQYLKKFDEELRRERENAAIAGVPSSGPDATTKSGRGESGRGGRKKSRQTTLAAAA AAATATDAQPTSVNPTGMDLDLPVDPNEPTYCFCNQVSYGEMVACDNPDCKIEWFHFGCVGLREQPKGKWYCSNCAATRN RRKGK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 121 | 121 | 7.7E-75 | – | |
| PANTHER | 1 | 121 | 121 | 7.7E-75 | ||
| SMART | 3 | 111 | 109 | 3.2E-23 | ||
| Pfam | 3 | 111 | 109 | 3.1E-20 | ||
| CDD | 13 | 108 | 96 | 7.14273E-38 | – | |
| Coils | 101 | 121 | 21 | - | – | |
| MobiDBLite | 121 | 174 | 54 | - | – | |
| PANTHER | 143 | 245 | 103 | 7.7E-75 | – | |
| PANTHER | 143 | 245 | 103 | 7.7E-75 | ||
| MobiDBLite | 157 | 174 | 18 | - | – | |
| SUPERFAMILY | 179 | 238 | 60 | 4.73E-23 | ||
| Gene3D | 182 | 239 | 58 | 1.1E-28 | ||
| ProSiteProfiles | 189 | 238 | 50 | 9.214 | ||
| SMART | 191 | 236 | 46 | 1.8E-11 | ||
| CDD | 191 | 237 | 47 | 7.38797E-33 | – | |
| ProSitePatterns | 192 | 235 | 44 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0011800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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