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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0015400 |
| Transcript ID | LotjaGi6g1v0015400.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT5G04810.1 pentatricopeptide (PPR) repeat-containing protein; Swiss-Prot: sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810, chloroplastic; TrEMBL-Plants: tr|A0A072VGX7|A0A072VGX7_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi6g1v0015400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:2729197..2732348) extracted from Lotus japonicus Gifu genome v1.2.
TGTTTTACATTAATTGGCCTATTTATGTTATCTAGTTCATCTATCTCTTTCAGCAGTTATTTGATTGAGCACTTTTTAGG ATTTATTGCCATACATCTACTCAATATACAATGTAGCACATATGTTCACCATGTTTCTTAGAGGTCCTCTAGTTTGCTAC CTAATTGTAGAGAGCTTGTTACCTATCATTCCATCAGAAAATATGACCTTGGTACTTGTGATTTATATGTTCCATCTTGA TGAGGTTGAATTTTGAATAATTTGATTAACTTCATCTGTTGTATCTTCTTTTCAGTTAGGAAAAATTTCTAAAGCATTGG AGATTAGCAGAATAATGAAAATGGCTGGCATTAAACATAACATGAAGACCTACTCTATGCTGATCAATGGATTCTTGAGG TTGAAAGATTGGGCCAATGCATTCTCTATTTTTGAAGACATCACTAAAGATGGTTTGAAACCTGATGTAGTACTCTACAA TAACATGGTACAAGCTTTTTGTGGGATGGGTAATATGGATCGTGCCATTTGTATTGTGAAGCAGATGCAGAAGGAGAGGC ATAGACCTACAACACGCACATTTTTACCCATTATACATGGTTTTGCAAGAGCTGGAGAGATGAGGAGATCCTTGGAGATT TTTGATATGATGAGAAGGACTGGCTGCATTCCTACTGTGCACACATATAATGCTCTTGTTCTTGGCCTAGTTGAGAAGCG TCAGGTAACCTGTGATTGAAATTATTAATTTAGATATGCGATTGACATGACTTGGTTTTTACTACTTCTCCTTGTCTACT TTGTGTTAATTTATGTGGATTTGAAAAAGGAAAAATAAATAGCTAAAGAGGTAAGTGAAGTAAATTAATTAACATATAAT AGTTATATTGCAATCGCTTTATTGAAGAAAACATAAATTGAGTTTGTGTTTTTCCTTTAAAAATCATTTCTGCAAATTTT GAAATTATAAGTTGAAAATGGCACAACTATAGTATGCACCACTATAGCTTCCATTGCTTCTTATTGTTGTAAGGTATCAG CATTGCTGTGTTCGGAAAGAATTGCAGAAACATTAAAATAAAGGCTAACCTGTAATCATGACAAATTCTAAACGATATAA CAGTGATTTATGAGGTTAGATATTTTCATAGCAAAACACCTAACTATTGATTGGAGAACCTGAGAACATATAGATAACCA ATCCTTGTTTGTTCAGTATGCATTAGTAGTAGTTCCGAGTCTTAATGCTAAACAAGTTAGAGTGAGTAGTCTTTCTACCA GGAGGACAGTTTCTCTTTAATTAACTGCTTTGTTTGAGTACATACTCCCTTGTTACTCTGTTTATATCATGAAAAAAAAT GTCTTTTTATAATTTAAAATTCCTTGTTGTTCTCCTCGCTCATTATTTACTACTTTCTCTAAATTATGGTTCTTTTTGTA TTTTTTGTGTAGATGGAAAAGGCAGTAGGAATATTGGATGAAATGAATCTGGCCGGTGTTGGGCCAAATGAACATACATA TACAACTCTCATGCAAGGTTATGCTTCACTGGGTGATACTGAAAAGGCATTTCAGTACTTTACGATATTGAAAAATGAGG GCCTGGAGGTTGATGTATATACTTATGAGGCATTGTTGAAGGCATGTTGCAAGGCAGGCAGAATGCAGAGTGCCCTAGCT GTCACAAAGGAAATGAGTGCAAGAAAGATCCCAAGAAACACTTTTGTTTACAACATACTAATTGATGGGTATGAATAATT TACATTTGGCTGTACTGGAAGTTTTCAGTTTTATCTAACATTTAATCTTATATATTCTTGAATGATGGGCATGTTGAGCT ATCTGTTATATGTAATTTGTTGTTATAACTCTGCTAGGGTATGGTTTGTCATGATTAGATTTTATTCTGTTATGATTTCT GGTTATCTTATTGTCATAGCTTGTTAGCTTGTCTCCCTATTTAGTTTGAGGAAGCTTAGTATTTGAATATTGTACATCTG AATCGTGTTAATGTAAATCGATTATTCAGAACACATTCCAATTTCAAGAGGGCAATTTGTGTTTTTTCTCAATTACTTTT TTCCCATGTGTATACACTTGTATATTTTAATATTTCTGCCCTTTACAGCCTTCACTAGGACTTAATATTTTACTAACCTA ATTTAATTTCTTAGTTGGGCTCGGAGAGGTGATGTTTGGGAAGCTGCGGATCTGATGCAACAGATGAGGAAGGAAAAAGT TCAACCTGATATCCACACCTACACTTCTTTTATAAATGCTTGTTGCAAGGCTGGGGATATGCAGGTATAATGTTTGTTGA GAAATATAATTTATTGTTAAAGATTGTGATTACTTATTGGTGACTAAACCCTAAATCATGACCTCTAAAACTAAGAGGGT AAGTGTCATTTCTAATGCATCTGCATCATCATTTACCATGAGAGTGAACTGTGATGGAAAACGTGGCTCGTTATGCACCT CGTGTCAATTCCTTCTGCACACTCTCACGAAGTGTCTTTTGAGTTACTCATTCTTCTGCTGGTGTATTCCTCAAAGCTTG ATTTTGAAAATTACTATAATTTATTTATATCAGTAGTTAATCTTTTTCCCCCCTCTGCTAGAATGCAACACAGATTATCC AAGAAATGGAAACAGCTGGTATAAAACCAAACCTCAAAACCTACACCACTCTAATACATGGTTGGGCTCGTGCTTCTTTT CCCGAGAAGGCTTTGAGGTGTTTTGAAGAGATGAAAGCGGCTGGATTGAAACCAGACAAAGCAGTTTACCATTGTCTCCT GACATCTTTGCTATCAAGAGCCACTTTTGCTCAATCGTACGTTTATAATGGCCTCTTGTCTGTGTGTAGAGAGATGATAG AATCTGAAATGACTGTTGATATGGGAACTGTGGTCCACTGGTCAAGATGTTTACGCAAGATTGAGAGGACAGGAGGAGAA CTAACAGAAGCCCTACAAAAGACCTTCCCTCCGGATTGGACCTCACATAATGTTCTTGATGTCAATTGTGAAACAGAAAT TGCTGATCCTGAAATAGATGATGATGATGATGTATATTATTTCAAAGAAATTGACAATGATGATGAGGACTCTGATGCTG AAGATTGTGATGATGATCCATCAGACAGGTGA
CDS sequence (LotjaGi6g1v0015400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAATGGCTGGCATTAAACATAACATGAAGACCTACTCTATGCTGATCAATGGATTCTTGAGGTTGAAAGATTGGGC CAATGCATTCTCTATTTTTGAAGACATCACTAAAGATGGTTTGAAACCTGATGTAGTACTCTACAATAACATGGTACAAG CTTTTTGTGGGATGGGTAATATGGATCGTGCCATTTGTATTGTGAAGCAGATGCAGAAGGAGAGGCATAGACCTACAACA CGCACATTTTTACCCATTATACATGGTTTTGCAAGAGCTGGAGAGATGAGGAGATCCTTGGAGATTTTTGATATGATGAG AAGGACTGGCTGCATTCCTACTGTGCACACATATAATGCTCTTGTTCTTGGCCTAGTTGAGAAGCGTCAGATGGAAAAGG CAGTAGGAATATTGGATGAAATGAATCTGGCCGGTGTTGGGCCAAATGAACATACATATACAACTCTCATGCAAGGTTAT GCTTCACTGGGTGATACTGAAAAGGCATTTCAGTACTTTACGATATTGAAAAATGAGGGCCTGGAGGTTGATGTATATAC TTATGAGGCATTGTTGAAGGCATGTTGCAAGGCAGGCAGAATGCAGAGTGCCCTAGCTGTCACAAAGGAAATGAGTGCAA GAAAGATCCCAAGAAACACTTTTGTTTACAACATACTAATTGATGGTTGGGCTCGGAGAGGTGATGTTTGGGAAGCTGCG GATCTGATGCAACAGATGAGGAAGGAAAAAGTTCAACCTGATATCCACACCTACACTTCTTTTATAAATGCTTGTTGCAA GGCTGGGGATATGCAGAATGCAACACAGATTATCCAAGAAATGGAAACAGCTGGTATAAAACCAAACCTCAAAACCTACA CCACTCTAATACATGGTTGGGCTCGTGCTTCTTTTCCCGAGAAGGCTTTGAGGTGTTTTGAAGAGATGAAAGCGGCTGGA TTGAAACCAGACAAAGCAGTTTACCATTGTCTCCTGACATCTTTGCTATCAAGAGCCACTTTTGCTCAATCGTACGTTTA TAATGGCCTCTTGTCTGTGTGTAGAGAGATGATAGAATCTGAAATGACTGTTGATATGGGAACTGTGGTCCACTGGTCAA GATGTTTACGCAAGATTGAGAGGACAGGAGGAGAACTAACAGAAGCCCTACAAAAGACCTTCCCTCCGGATTGGACCTCA CATAATGTTCTTGATGTCAATTGTGAAACAGAAATTGCTGATCCTGAAATAGATGATGATGATGATGTATATTATTTCAA AGAAATTGACAATGATGATGAGGACTCTGATGCTGAAGATTGTGATGATGATCCATCAGACAGGTGA
Protein sequence (LotjaGi6g1v0015400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKMAGIKHNMKTYSMLINGFLRLKDWANAFSIFEDITKDGLKPDVVLYNNMVQAFCGMGNMDRAICIVKQMQKERHRPTT RTFLPIIHGFARAGEMRRSLEIFDMMRRTGCIPTVHTYNALVLGLVEKRQMEKAVGILDEMNLAGVGPNEHTYTTLMQGY ASLGDTEKAFQYFTILKNEGLEVDVYTYEALLKACCKAGRMQSALAVTKEMSARKIPRNTFVYNILIDGWARRGDVWEAA DLMQQMRKEKVQPDIHTYTSFINACCKAGDMQNATQIIQEMETAGIKPNLKTYTTLIHGWARASFPEKALRCFEEMKAAG LKPDKAVYHCLLTSLLSRATFAQSYVYNGLLSVCREMIESEMTVDMGTVVHWSRCLRKIERTGGELTEALQKTFPPDWTS HNVLDVNCETEIADPEIDDDDDVYYFKEIDNDDEDSDAEDCDDDPSDR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 65 | 65 | 2.5E-100 | – | |
| Gene3D | 1 | 92 | 92 | 4.8E-22 | ||
| ProSiteProfiles | 9 | 43 | 35 | 11.181 | ||
| TIGRFAM | 12 | 45 | 34 | 1.8E-6 | ||
| SUPERFAMILY | 24 | 330 | 307 | 4.17E-5 | ||
| Pfam | 26 | 122 | 97 | 5.4E-10 | ||
| ProSiteProfiles | 44 | 78 | 35 | 11.389 | ||
| TIGRFAM | 46 | 79 | 34 | 4.6E-6 | ||
| PANTHER | 48 | 215 | 168 | 2.5E-100 | – | |
| ProSiteProfiles | 79 | 113 | 35 | 11.016 | ||
| TIGRFAM | 82 | 114 | 33 | 1.7E-6 | ||
| Gene3D | 96 | 248 | 153 | 3.0E-43 | ||
| ProSiteProfiles | 114 | 148 | 35 | 10.369 | ||
| TIGRFAM | 116 | 150 | 35 | 3.3E-5 | ||
| Pfam | 148 | 197 | 50 | 4.0E-13 | ||
| ProSiteProfiles | 149 | 183 | 35 | 10.589 | ||
| TIGRFAM | 151 | 185 | 35 | 3.7E-6 | ||
| PANTHER | 180 | 395 | 216 | 2.5E-100 | – | |
| ProSiteProfiles | 184 | 218 | 35 | 11.213 | ||
| TIGRFAM | 186 | 219 | 34 | 6.5E-7 | ||
| Pfam | 204 | 358 | 155 | 1.1E-15 | ||
| ProSiteProfiles | 219 | 253 | 35 | 11.915 | ||
| TIGRFAM | 222 | 255 | 34 | 8.3E-7 | ||
| Gene3D | 249 | 395 | 147 | 4.7E-31 | ||
| ProSiteProfiles | 254 | 288 | 35 | 13.099 | ||
| TIGRFAM | 256 | 289 | 34 | 6.4E-9 | ||
| ProSiteProfiles | 289 | 323 | 35 | 12.419 | ||
| TIGRFAM | 292 | 324 | 33 | 4.0E-9 | ||
| MobiDBLite | 428 | 448 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0015400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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