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LotjaGi6g1v0022100.1

Overview

Field Value
Gene ID LotjaGi6g1v0022100
Transcript ID LotjaGi6g1v0022100.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Clathrin assembly protein; TAIR: AT1G05020.1 ENTH/ANTH/VHS superfamily protein; Swiss-Prot: sp|Q9ZVN6|AP180_ARATH Clathrin coat assembly protein AP180; TrEMBL-Plants: tr|K7LYR1|K7LYR1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0022100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:4175036..4178090) extracted from Lotus japonicus Gifu genome v1.2.

GTCAAGTTTTCTTTCTGAACAATTTTTACTCTTCAACTTTTTTTCTTACAACAAATTCTGCAAAAATAATAAACTTCAAT GCCAAGTAATGTTCTAACAAATTTCCCAGAAAACTTGAAATTTAATTTGATTCACCATGCCAAGCAAGCTAAGGAAGGCA ATTGGAGCAGTGAAGGACCAAACAAGCATTAGCCTTGCCAAGGTAACAAATGCAGCCAACCTTGAAATCACAATCCTCAA AGCAACAACCCATGACAAAAGTCCCATTGAGGAACGTTACGTGAATGAAATTGTCAACATTGTTTCCTCTAACAAACTCT ATGCAGCAGCATGTGCCAATTGCATTGGCAAGCGAATCGGCAAGACGCGAAACTGGATCGTTGTCCTTAAATCTCTCATG ATCGTCCTCAGAATTTTCCAAGATGGCGATCCATATTTTCCTAGAGAAGTTTTCCATGCAATGAAAAGGGGTGCCAAAAT TCTCAACCTTTCAAGTTTCAAAGATGATTCCAATTCTTCTAGCCCTTGGGATTACACTGCTTTCATCAGAACATTTGCTC TGTACCTTGATGAGCGTTTGGATTGCTTTTTAACCGGAAAGCTTCAAAGGAGGTTCACGTATCATAACCGATTTCATGAG AAGCATCAGAGGAAGAATCTCTCCAATGAGCCTGGGATTAGAGACATGAAACCCGCCATGGTGCTTGATAGAATGCCTCA CTGGCAAAGGTTGTTGGATAGAGCTATAGCAACTAGGCCAACCGGGTCGGCCAAGACGAATCGTTTGATTCAGATTTCCC TCTATGCTGTTGTGCAAGAAAGCTTTGATCTCTATAAGGATATTTCTGATGGTCTTGCTGTTGTTTTAGATAGCTTCTTC CATATGCCACTTTCATCATGCGCTGCTGCATTCCATGCTTGTGTTAAATCTTCCAAGCAATTTGATGAGTTATCTCGTTT TTACTCTTTTTGTGCTAACAGTGGGATTGGGAGGTCCTATGAGTACCCAACTGTGCAAAAAGTTTCTGAAGAGCTCATGG AGACATTGCAGGAATTCCTGAAGGACCAAGCAAATGATGGTGGTTCCAATTCCAAACACTCACTATCTCCTCCTGCAACA AAGTATCACTCTGCAGCTTCGAGTTCATCGTCCCAAGTTGAAGCCGGGGAACGATACGGAACGCTTGAGAGGTATTTTGG GAGTGGATCTGATTTGGGGTCTCAATGCACATCACTTGAAGACCTCATGACTGCTACAGATGCTGCTATGAGTCCTAGGA GGTCCCTTGAGCAAGATATGTATTCTGAGCAATCTGATTCTGATCAAGATGAGAAACATTCACAATATGATGACTTTGCT AGTGCAAATGGTTCTAGTTCTACCAAATCATTTCCTGTTGATCAAACATCAAGGTCGAGTTTGGATATTATAAGCTTTGA AGATTTGCAGCAAGATGTGCAACAAAATCAAATAATTGAATGGGAGCATAAACACACAAGGAAGGGTTCCATTTCCAATG ACAGCTCCAAAGATTGTTGGGAGTTGGTTTTGGCAAAGACAGTTACTGCACCTGCTGAAACATCACCCAAATTGAACAAT GGGTTTGATCCATTTGTCGCCTTATTTGATCAAGCTCCAAGTCCAACACCTCAGAACACATACAATCCCTTCTTGGAAGA CATAGGAACTGTTACTCATGCCACAGATGCTAATTCCAATGATGTTTTAGATGTGGCACCGACGTTTCAGGAAACCGCAT CAACCTTCTGTACTCCGGCTCCTCTTGCATCAACCTTATCTGATCAAAGTCCTAATTCCTTTACAAATTTGGATCTGATT TTTGGTGACACAATTCCAAATGAGACAGGAATTGCTCCAACCTTTCAATGTTCTGCCGAGACTAACATGACAGTGCCACC AACTTTTCATACTCAAACATCTGATAAGATGATTGTAGCACCAAGCTTCCAGGCTCAATGTTCTTTTACGTATGATTCAA CACCAACGTTTCAAGTGCTTGATTCAAATGTTGATGCTACAATGGAAGCATCGAACCATAGTGATCAGAATCTTAATCGG AGTATAGTTCAAGTGTATAATTCAACAGTGGCACCAACTTTTAGTGCAAAGGATTGCCAGGAGACAACATTGGCAATGCC TGCAGAAGAAGATCCATTTGGGCCATGGCCCTGTGCAAAGAGCAATGAACAAACATCTAATGTGTCAATGCAAAACCAAA CATTGCTGCAGCTGCAACAACTGTGGTTGGAGCAACAAAACAAGATTATAACAAAACACATGACTTGAGTTTAATTGCAA ATGAAAACATCTCTTCAAAATTTTGTAAAGTTCTGTACTCAAGTTGATAACACTCTTTCTATCTAATTTTTCTTTTCTTT ACTCTTTCCCCCTCTCTAATTTCTTGTGTCGTGAATTATTTATTTCCCACTTTGTTATTTCCTTTTGCTAATTCTTTCGA ATCAAATCTAGGTACCATTTGACACGCAAACAAAACGGAACGAAACAGCCTATTATATTCTTTTTGGTTCTGTTCTTCCT CAGAATTTGAATTCAAGTCCCTACTTGGCAATGCTCGAAGCGGCACAATGGATCTCAGCTAAGCAGGGCGGAACATTGTG GGGCAAGGAATGGAGGAACACGGCGGCAAGCAAATCCAGCAGAGGTGTACCTGCAGAAAGCACTATGACATCCAAGAAAG TTGTCAATTTCTAGGATGTTTAGGGAAGATCAATAGAAAAAATAAGTATCTATCTTTATTTCTTTGTCAATTTAGTACTT AGTTAATCGCTTAATCAATATGTCAACCGCCTAACCGACTTAGTTATATGTGGCATAATTATCTAAAGTGTTATGAATGT AGCATTCTTAGATTTGAGCAGCCATGAAATGATAAGACGAAACTCAGCCCAATTTCATTTGAGGCCTCAAGTTTTGGTCA GTTTGTCGGATCTCATCCTCGAACAATATCTCTATGCTAGATATGTCGTATGTGAGAAGTGCCGAGATGTATACTTTATA TTTACATGAGCTTAT
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0022100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCAAGCAAGCTAAGGAAGGCAATTGGAGCAGTGAAGGACCAAACAAGCATTAGCCTTGCCAAGGTAACAAATGCAGC CAACCTTGAAATCACAATCCTCAAAGCAACAACCCATGACAAAAGTCCCATTGAGGAACGTTACGTGAATGAAATTGTCA ACATTGTTTCCTCTAACAAACTCTATGCAGCAGCATGTGCCAATTGCATTGGCAAGCGAATCGGCAAGACGCGAAACTGG ATCGTTGTCCTTAAATCTCTCATGATCGTCCTCAGAATTTTCCAAGATGGCGATCCATATTTTCCTAGAGAAGTTTTCCA TGCAATGAAAAGGGGTGCCAAAATTCTCAACCTTTCAAGTTTCAAAGATGATTCCAATTCTTCTAGCCCTTGGGATTACA CTGCTTTCATCAGAACATTTGCTCTGTACCTTGATGAGCGTTTGGATTGCTTTTTAACCGGAAAGCTTCAAAGGAGGTTC ACGTATCATAACCGATTTCATGAGAAGCATCAGAGGAAGAATCTCTCCAATGAGCCTGGGATTAGAGACATGAAACCCGC CATGGTGCTTGATAGAATGCCTCACTGGCAAAGGTTGTTGGATAGAGCTATAGCAACTAGGCCAACCGGGTCGGCCAAGA CGAATCGTTTGATTCAGATTTCCCTCTATGCTGTTGTGCAAGAAAGCTTTGATCTCTATAAGGATATTTCTGATGGTCTT GCTGTTGTTTTAGATAGCTTCTTCCATATGCCACTTTCATCATGCGCTGCTGCATTCCATGCTTGTGTTAAATCTTCCAA GCAATTTGATGAGTTATCTCGTTTTTACTCTTTTTGTGCTAACAGTGGGATTGGGAGGTCCTATGAGTACCCAACTGTGC AAAAAGTTTCTGAAGAGCTCATGGAGACATTGCAGGAATTCCTGAAGGACCAAGCAAATGATGGTGGTTCCAATTCCAAA CACTCACTATCTCCTCCTGCAACAAAGTATCACTCTGCAGCTTCGAGTTCATCGTCCCAAGTTGAAGCCGGGGAACGATA CGGAACGCTTGAGAGGTATTTTGGGAGTGGATCTGATTTGGGGTCTCAATGCACATCACTTGAAGACCTCATGACTGCTA CAGATGCTGCTATGAGTCCTAGGAGGTCCCTTGAGCAAGATATGTATTCTGAGCAATCTGATTCTGATCAAGATGAGAAA CATTCACAATATGATGACTTTGCTAGTGCAAATGGTTCTAGTTCTACCAAATCATTTCCTGTTGATCAAACATCAAGGTC GAGTTTGGATATTATAAGCTTTGAAGATTTGCAGCAAGATGTGCAACAAAATCAAATAATTGAATGGGAGCATAAACACA CAAGGAAGGGTTCCATTTCCAATGACAGCTCCAAAGATTGTTGGGAGTTGGTTTTGGCAAAGACAGTTACTGCACCTGCT GAAACATCACCCAAATTGAACAATGGGTTTGATCCATTTGTCGCCTTATTTGATCAAGCTCCAAGTCCAACACCTCAGAA CACATACAATCCCTTCTTGGAAGACATAGGAACTGTTACTCATGCCACAGATGCTAATTCCAATGATGTTTTAGATGTGG CACCGACGTTTCAGGAAACCGCATCAACCTTCTGTACTCCGGCTCCTCTTGCATCAACCTTATCTGATCAAAGTCCTAAT TCCTTTACAAATTTGGATCTGATTTTTGGTGACACAATTCCAAATGAGACAGGAATTGCTCCAACCTTTCAATGTTCTGC CGAGACTAACATGACAGTGCCACCAACTTTTCATACTCAAACATCTGATAAGATGATTGTAGCACCAAGCTTCCAGGCTC AATGTTCTTTTACGTATGATTCAACACCAACGTTTCAAGTGCTTGATTCAAATGTTGATGCTACAATGGAAGCATCGAAC CATAGTGATCAGAATCTTAATCGGAGTATAGTTCAAGTGTATAATTCAACAGTGGCACCAACTTTTAGTGCAAAGGATTG CCAGGAGACAACATTGGCAATGCCTGCAGAAGAAGATCCATTTGGGCCATGGCCCTGTGCAAAGAGCAATGAACAAACAT CTAATGTGTCAATGCAAAACCAAACATTGCTGCAGCTGCAACAACTGTGGTTGGAGCAACAAAACAAGATTATAACAAAA CACATGACTTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0022100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPSKLRKAIGAVKDQTSISLAKVTNAANLEITILKATTHDKSPIEERYVNEIVNIVSSNKLYAAACANCIGKRIGKTRNW IVVLKSLMIVLRIFQDGDPYFPREVFHAMKRGAKILNLSSFKDDSNSSSPWDYTAFIRTFALYLDERLDCFLTGKLQRRF TYHNRFHEKHQRKNLSNEPGIRDMKPAMVLDRMPHWQRLLDRAIATRPTGSAKTNRLIQISLYAVVQESFDLYKDISDGL AVVLDSFFHMPLSSCAAAFHACVKSSKQFDELSRFYSFCANSGIGRSYEYPTVQKVSEELMETLQEFLKDQANDGGSNSK HSLSPPATKYHSAASSSSSQVEAGERYGTLERYFGSGSDLGSQCTSLEDLMTATDAAMSPRRSLEQDMYSEQSDSDQDEK HSQYDDFASANGSSSTKSFPVDQTSRSSLDIISFEDLQQDVQQNQIIEWEHKHTRKGSISNDSSKDCWELVLAKTVTAPA ETSPKLNNGFDPFVALFDQAPSPTPQNTYNPFLEDIGTVTHATDANSNDVLDVAPTFQETASTFCTPAPLASTLSDQSPN SFTNLDLIFGDTIPNETGIAPTFQCSAETNMTVPPTFHTQTSDKMIVAPSFQAQCSFTYDSTPTFQVLDSNVDATMEASN HSDQNLNRSIVQVYNSTVAPTFSAKDCQETTLAMPAEEDPFGPWPCAKSNEQTSNVSMQNQTLLQLQQLWLEQQNKIITK HMT
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22951
1 723 723 1.7E-243 –
PANTHER
PTHR22951:SF75
1 723 723 1.7E-243 –
Gene3D
G3DSA:1.25.40.90
2 156 155 1.7E-39
IPR008942
ProSiteProfiles
PS50942
21 158 138 28.129
IPR013809
SMART
SM00273
27 158 132 3.2E-36
IPR013809
SUPERFAMILY
SSF48464
28 151 124 1.89E-24
IPR008942
Pfam
PF07651
29 310 282 1.9E-80
IPR011417
CDD
cd16987
29 151 123 4.16503E-50 –
Gene3D
G3DSA:1.20.58.150
172 321 150 2.4E-34
IPR014712
SUPERFAMILY
SSF89009
178 307 130 3.41E-33 –
MobiDBLite
mobidb-lite
311 342 32 - –
MobiDBLite
mobidb-lite
377 422 46 - –
MobiDBLite
mobidb-lite
387 405 19 - –
MobiDBLite
mobidb-lite
406 422 17 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005543
Molecular function Phospholipid binding Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester.
Subterm of
GO:0005545
Molecular function 1-phosphatidylinositol binding Interacting selectively and non-covalently with phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol.
Subterm of
GO:0030136
Cellular component Clathrin-coated vesicle A vesicle with a coat formed of clathrin connected to the membrane via one of the clathrin adaptor complexes.
Subterm of
GO:0030276
Molecular function Clathrin binding Interacting selectively and non-covalently with a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles.
Subterm of
GO:0048268
Biological process Clathrin coat assembly The process that results in the assembly of clathrin triskelia into the ordered structure known as a clathrin cage.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0022100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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