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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0034700 |
| Transcript ID | LotjaGi6g1v0034700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ring finger protein, putative; TAIR: AT4G24015.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q84TF5|RHA4A_ARATH Probable E3 ubiquitin-protein ligase RHA4A; TrEMBL-Plants: tr|K7LY93|K7LY93_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0034700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:6528236..6531197) extracted from Lotus japonicus Gifu genome v1.2.
GCCTATACCCTCCCTAAGTCCTAATTTATCATTCTCTCTTCGCCAATTCCAACCTCAATTTTTTCTTGTCAAACAAAGGA AAGAACCAAGGAAACAGGGCTCTCTCAGAAAATAAAACTTACCACCTCCACCAGCATATCTTGGTAAGTAGTGTATGCTC AACTCAAGTTATTACCTATTAGATTGTGTTTGAATATTCAACATGCTCAATATCTATACTTATTCAACCACAACAATAAC TCTCTAAAGTTTTCATTTTACATGTGCTTAATTTGTATGTATCACACTGGCAGGAGGATTGTGAATGTTAGGAGATGGGT TTTAAATGGTAGTCGGCAATCGTAATTACACTTGCATCATAAAGGTTTTTGGACTTTCTCCTTGCATCGCGGGCGTAATT ACAATTACATCAACCTGTATTTGTCTGCAATTTCGAAACCATAACCGCAACCACTACTGCAATTTAAAACTCGAAGCAAG AGACTCCGAACATGATCATGGGCAATGTTCCACAAACTACAACAAGCAATCCTCCTCCACACCTGTATCCACAGGAACTT CAGCTCAAGCTTTACCAGGCTTTCATATTCTCAATTCCCATACTATTTTCCATTATTCTCATTCTCCTGTTTTATTTGTT CTACCTCAAGAGAAGGACATCCTCTCTCTCATCCTCTGCTCCTCACTTACTTCCAATTGTTACCAATCCAACAACTAGCT ATCTCTATCATACCTCAGTAAGTCAATAATCTCACTTCTTCATCTCTAGTTTCTATTATATATTGAATCAAAAGAAATGT TAAGCTTGTTTTTTGCACTGCATCATCCATAAAATAAAATCAATAAAATTAGCTAATATTAGTCTCTCTGTTGATAATTC CATAGCCTTGTCGTTTGGACCTGACCGTCAAATTCCTGGAAAAACTTCCAAGAATTTTATTTGATGAGGATTTGCGAGCA AGGGATTCACTGTAAGTCGTTTTGAGTGTTCACGGGTTCTTTTTCTTTTGTTGCTATATTTTATTTGACATAGGTTCCTC TTGAGATGCTTTAGTTGCATTTCATTTCTATCTCAATTTTCATTCAATAAATTTCTATTCACGTCTAAAATCACATAAAA ATAAACGGTGGCCGACACCCGACCCCTGCAGTTTGTTTCAATAAACTCTTCAATTTGTTACTGTTTCTCACTTTTATAAA TTATAGGTGTCGGGTGCACCACTATTTATATGCTTACAAAATTCATGAACAGTACAACAGAGATAAAAATAGAAAGTATA TAAAAAAATAAGATATATGATAAGTACGTAATATGATAGTATAATGTATAAAGTATAAACTCACTCCTTTTCCTTTTGGT GTGTGTCTTTTTGTCTTGAAAGTTGTATTAGGAACCGATTAATTTAAGTTCTTATCTTAATTAGAATTTATGGTAGGTTC ATGTAACTAGTTCAGTTAAGCTAATTTAAGAATGCATGTTATTGAAATAAGCTTAAGACTTGTTATAAAAAAATTCAAAA CAACCGTTTATACTAAAGTTATTTACATAAGTTCTCTCAAACATATAAATATTTATGAACCTTCATTAGAGTCTTACTCT TTCCTGGTTGGTATATTTTGGATAAGACGGAAGGAAGGGGCTATGGTTATATGGTTCTCCCAAATACATATAGATGGAAA GAATACTAAGGCCAAATACCAGTAAATTAAATCCCCATCCTGGAAGCAAAGCTGGAAGCAAAGCTTCAGCTTCTTCACAA GACAGCAACGTCTTAAATACCACATTGAATAAACTCAAGAAAATTACAGCATCTCCAAACAAACCTGTGGATTCTCCAAC CATGTCAATTTTTTTTAATGTTGTACAAGTTTGCTCTTCACTCATTGTTTCTCCTCTCAAAATAAAATTCTTAATTGTTT CTACCTTGAAGTGAATTATGAAAGGAGATACTTGATATCAAAATTTATATAAAAGTTAAGTCTCTTTAAGATTAATATAA AAAATTGATAATTTCTATGATATTATAAATCTTTAAGATATTTTTAGGCCTTAGAATGTGTATACTATACAGCCTAACTT GGAATCCACATCTTGTTCCAAATCACCAGTATTCAAATTCTTACGTGTATTTATTTGATTTGATGAAGCAGCACTATTTA GCAATTCAAATTCTAACTTGAAATTTTCACTTTTGGCAAAAAGATGTTGTGTTTGTCTAGGAGAATTTGAGATGAAAGAA GAGGTGCTTCAGATTCCTTATTGCAAGCATGTGTTCCACATTGATTGCATACATCACTGGATGCAATCAAACTCCACCTG TCCACTTTGTAGATGTTCCATCATCCCCACTACCACCAAGTTCCTCAATCCAGAATCAGACCCACCTCAGCAAGGTGCTA TCATTTCACACTCTCCATTACAAGTCATGTCATTATTGCAACCTCAAAGAGAAGATGAACCCAGTGCTTCCTCAAATACA GAGAATTTTTCAAGGGAACGAATGATGCAGTGGCTGCACTAGCTGCATTGTATAATAATAATGGACACTGATTTGGAGGA AGGGATATTCAGAAGCTACACATCAAATGTTATCTAAACCAACATTATATTTACGAAATAAAATTTTGCCCTTCTTTTGG TACATTGTATATATATATTCAATCATTTAGTCCAATGTATAGGCTAGCAAACATGGCAGCAACACACAGCAAGAAATCAA TCAGGCCCTCAGCAGCTCCAAAGCCTCAAAAACTCCACAACCAATACCAGATCAGATCACCAACCAGACACAAAGAGGTG AAATTAAGCCAAAGACCAAACTGGGAATTCCCTATTACAACGTCGAGCCTTTTAACCCTGACAACAACGCCAGTCCATGA TAAACGACTATAGTATGAGATTTTGTATTGTTAGCTTCAACTTCTAACCAAGATTAATAAATGTTTTTTGAACTGGACCA AA
CDS sequence (LotjaGi6g1v0034700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCATGGGCAATGTTCCACAAACTACAACAAGCAATCCTCCTCCACACCTGTATCCACAGGAACTTCAGCTCAAGCT TTACCAGGCTTTCATATTCTCAATTCCCATACTATTTTCCATTATTCTCATTCTCCTGTTTTATTTGTTCTACCTCAAGA GAAGGACATCCTCTCTCTCATCCTCTGCTCCTCACTTACTTCCAATTGTTACCAATCCAACAACTAGCTATCTCTATCAT ACCTCACCTTGTCGTTTGGACCTGACCGTCAAATTCCTGGAAAAACTTCCAAGAATTTTATTTGATGAGGATTTGCGAGC AAGGGATTCACTATGTTGTGTTTGTCTAGGAGAATTTGAGATGAAAGAAGAGGTGCTTCAGATTCCTTATTGCAAGCATG TGTTCCACATTGATTGCATACATCACTGGATGCAATCAAACTCCACCTGTCCACTTTGTAGATGTTCCATCATCCCCACT ACCACCAAGTTCCTCAATCCAGAATCAGACCCACCTCAGCAAGGTGCTATCATTTCACACTCTCCATTACAAGTCATGTC ATTATTGCAACCTCAAAGAGAAGATGAACCCAGTGCTTCCTCAAATACAGAGAATTTTTCAAGGGAACGAATGATGCAGT GGCTGCACTAG
Protein sequence (LotjaGi6g1v0034700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIMGNVPQTTTSNPPPHLYPQELQLKLYQAFIFSIPILFSIILILLFYLFYLKRRTSSLSSSAPHLLPIVTNPTTSYLYH TSPCRLDLTVKFLEKLPRILFDEDLRARDSLCCVCLGEFEMKEEVLQIPYCKHVFHIDCIHHWMQSNSTCPLCRCSIIPT TTKFLNPESDPPQQGAIISHSPLQVMSLLQPQREDEPSASSNTENFSRERMMQWLH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 26 | 26 | - | – | |
| PANTHER | 20 | 171 | 152 | 9.8E-46 | – | |
| PANTHER | 20 | 171 | 152 | 9.8E-46 | – | |
| Phobius | 27 | 51 | 25 | - | – | |
| TMHMM | 30 | 52 | 23 | - | – | |
| Phobius | 52 | 216 | 165 | - | – | |
| Gene3D | 81 | 160 | 80 | 1.7E-17 | ||
| SUPERFAMILY | 92 | 160 | 69 | 4.18E-19 | – | |
| SMART | 112 | 153 | 42 | 1.2E-4 | ||
| ProSiteProfiles | 112 | 154 | 43 | 12.017 | ||
| Pfam | 112 | 154 | 43 | 1.4E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0034700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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