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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0036600 |
| Transcript ID | LotjaGi6g1v0036600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phytoene synthase; TAIR: AT5G17230.1 PHYTOENE SYNTHASE; Swiss-Prot: sp|P08196|PSY1_SOLLC Phytoene synthase 1, chloroplastic; TrEMBL-Plants: tr|G7JA42|G7JA42_MEDTR Squalene/phytoene synthase; Found in the gene: LotjaGi6g1v0036600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:7289911..7293299) extracted from Lotus japonicus Gifu genome v1.2.
CTTGGAAGGATAAGCATTGATATGATTAGTCACTACACTCAACTATATAACCACAGATATCTATATCATGGTAGTAGATA CAATACAGAGTTCAAAGAATTATATAGTTCACTAAGCTAGGCCACAAATTTGGCATCAGCTAGTTCCTCTCTTCCTGTTA AACTGTCAGAAAAGAGATACTCTGATGAGTTTATCATTTTCTCTGGCAGCAAAGCCTTCAATCTACAGGAGCAACAGGAA ACCATGCTGTAGCAGAAATGATGTTATAAGGTCAGAGGTAACCTTGGCTCCCAAACAAAGAACCGAGAGCATGTTTCCTC TGCTGTCAAAACAAGGAGTTTCTCTAGCTGATTTACACGTACAAGAAGTTGTTGAGAGGCAGTGCCAGACATCAAATTTT GACACTTTAAGTCCTTGTAGCAAGCCAAAGTTTGAGCCCAATTTTCTCATGGATTCCTATGAAATGTGTAGAAAGATCTG TGCCGAATATGCCAAGACCTTCTATCTTGGTGCAAATTCCACTTTCATTTTGGTTGAACATAGTAGATTCTTACAATTCA CTAGCTAGGGACTAATGATAATAAGAACTATTTCATTTTGGTACTTAGAAACTTGATTGATATATCTGTTTGTTATAATC ATCTCACCTTCATTGTCATTCCTTAAACAGGAACATTGCTTATGACAGAAGAAAGGAAGAGAGCTATATGGGCAATTTAT GGTAAGAAATTTCATCTGATAAAGTTGCAAACAATGACCAAAATTTTCTATCCTCATTTACTGTCTTGTTATCTTCCTAT CAATCAAATTATGTCATGTTATTTGAAAATCACTTATGTAAGTTATAATTGCCATACTCATGTCTACTTGACACAATTTT ATTGATGAAACACGGAAGAGGTCGTCAAATGAGGACAGAGGATCTTGCAACTGTTGTAGTTTTGTACTCTAATCACTCAC CACAAGTCCAAATAATATTTCTTAATTGACATTTTCTCTTTTCAGTTTGGTGCAGGAGGACGGATGAACTGGTTGATGGC CCTAACGCTGACTATATGAACTCTTCTGTGCTTGATAGGTGGGAAGATAGATTGCATGATATTTTCAATGGACAACCCTA TGATATGCTTGATGCTGCACTTACTGATACAGTCTCCAACTTCCCCTTGGATATTAAGGTGATTACAAATCCATTAGAAT AGATTTTTCAACAAGTACTAAAATGAAAAGAAAAGCTAAAATGATCTTGCAAGGTATACATGCTTCTGAATGATAGTTTC CTGCTTGAGCTAAATTAGTTATGCCCCTCAATCTTTACAGAATCTCCTTCATCTAACTTCTCCATGAATACCTATAAACT TATGAATATACTTTTATATAAGTTGGAAATCACATACTTATCTCAGTTGAGCAACTTTTTAAGCTAGCAGGAGCTAAACT AAAATGAACCTAAACAACTTAAATCTACTATTAGAATAAATTCTTTCACTACCATGTTTGGATCCACGGTTTAATTTTTC AGAATCAATTTTTCGTCGCACAAAAGCTATTCATAGTAGCTTCTTCAAGAATCACTTGTGGCCCAACATGAAAACATACC GTGTTTTTCCAAACATATGTTGTCTCTTTCTCTTAGGGTGTGTTTGGGAGTTTTTAAGGGCGGGAAGGGGAAGACTTTGA GTCAAAGGGAAGGGAGGGGAAGAGAGGGTAATGGAGGGTAAGCGTTCCCCTTATATGGAAGCTATAATTCAACCAAAACA CTCAAACAAGGGGATGACTTCTGATAAGCCTATTTTTTCTCTTCTCGCTTCTCTAAAATCAAACTTGTAAACAAAGCTTT AATCTCACTAATAACATGTTTGAATCATCTTCTCTTTCTTTATAATCAATTCTGACACTCAAAAGTCACTCAAAGAAGGT TCTCCACTTCTCCCAAAAGTTGATTTTATCTTTAAAAGTCAATTATAAAAAGATATCTAGCATGTTTGAATCAATTTTTG TTTCCTCTGAATTAATATTCAGAAGCTATATTTCAAACAAACTTCTCCCAACAGTTGATTTCACTTCAGCTAACGAGGTC TTTCTCTTTGATTGCATGACAGCCTTTCAGGGACATGATACAAGGTATGAGAATGGACACAATGAAAAGCAGATACAAGA ATTTCGAGGAGTTATATCTCTACTGCTACTATGTAGCTGGAACTGTTGGATTGATGAGTGTTCCAATAATGGGAATTTCC CCAGAGTCTCTCATATCTGCTCAGAGTGTATATAATGCAGCACTGCATCTTGGGATTGGAAATCAACTCACAAACATTCT TAGAGATGTTGGAGAGGAGTAAGTTTCAAATTGTTTTTCTTCACTTCATTATATCCTGTTCAGTTACAGACTAAAGAGCA CTTGTTGGAGCTTATCTACTACAAAAAACAACATCGAACGAGCTCCAATAATTGCTGTTTGATCCGCATCCAAACAGGTT CTTAGTTCTCTTCTGATGAGTGATGACTTATCTTACAAGAATGTATAATTGTCAACTTGTTTCAGTGCATTGAGAGGTAG AGTCTACCTTCCCCAAGATGAACTTGCCCAGTTTGGTTTGTGTGATGAGGATGTTTTCTCAAGAAAGGTCGATGAAAGAT GGAAAGAGTTTATGAAAGAGCAGATTACAAGGGCAAGATTCTACTTCAATTCAGCAGAGGAAGGAGCTTCTCAGCTTCAA AAGGACAGCCGTTGGCCAGTAAGTACATTTGAGAATTTAGAGTACATGGTTTTAAATTAGGAATATTACATTGGGGAATC ACATGAATGTCACATTAATATGCTTTTTGTGAGATGTGCAGGTTTGGTCCTCACTGATATTGTATCGCAAGATCTTGGAT GCAATTGAAGACAATGATTATGACAATTTGACGAAAAGAGCCTATGTAGGACGAACTAAGAAACTTTTGACGTTGCCTTT AGCCTATACTAGATCTCTCTCCATTGCCACAAGGAAATTTCATCCTTCATTGGCAAGGAATAACTTGCAAAATTAGTAGT CGAGAAAATAGCTTCAATTCAATGCCAAATGCATACCACAAATAAGAGGAATCATAATATTGGCTTCCTTGTACAGATCA TATGTTTACCATATAATCTAAATAATCAACCCTGGTTAGTATAAATTTGGGTCCCTCTTGGAGAGGATTCGAAATCTAAA GTAGTAAAGAAGAGAGACCAAAAGAGAGAGAATTTTATATTTGTAAATGAATTGAATCATTTCTCTTGTCAATTTATCAC AAGTTTGAATCCACTTTTAGTATGAGAATTCTTACGTTAAAGCTTAAGGTTAGTTATGACTAACATGACTATTATTAAAA CAAATAACCAATTTAAGAACTCGTTTAAG
CDS sequence (LotjaGi6g1v0036600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTTATCATTTTCTCTGGCAGCAAAGCCTTCAATCTACAGGAGCAACAGGAAACCATGCTGTAGCAGAAATGATGT TATAAGGTCAGAGGTAACCTTGGCTCCCAAACAAAGAACCGAGAGCATGTTTCCTCTGCTGTCAAAACAAGGAGTTTCTC TAGCTGATTTACACGTACAAGAAGTTGTTGAGAGGCAGTGCCAGACATCAAATTTTGACACTTTAAGTCCTTGTAGCAAG CCAAAGTTTGAGCCCAATTTTCTCATGGATTCCTATGAAATGTGTAGAAAGATCTGTGCCGAATATGCCAAGACCTTCTA TCTTGGAACATTGCTTATGACAGAAGAAAGGAAGAGAGCTATATGGGCAATTTATGTTTGGTGCAGGAGGACGGATGAAC TGGTTGATGGCCCTAACGCTGACTATATGAACTCTTCTGTGCTTGATAGGTGGGAAGATAGATTGCATGATATTTTCAAT GGACAACCCTATGATATGCTTGATGCTGCACTTACTGATACAGTCTCCAACTTCCCCTTGGATATTAAGCCTTTCAGGGA CATGATACAAGGTATGAGAATGGACACAATGAAAAGCAGATACAAGAATTTCGAGGAGTTATATCTCTACTGCTACTATG TAGCTGGAACTGTTGGATTGATGAGTGTTCCAATAATGGGAATTTCCCCAGAGTCTCTCATATCTGCTCAGAGTGTATAT AATGCAGCACTGCATCTTGGGATTGGAAATCAACTCACAAACATTCTTAGAGATGTTGGAGAGGATGCATTGAGAGGTAG AGTCTACCTTCCCCAAGATGAACTTGCCCAGTTTGGTTTGTGTGATGAGGATGTTTTCTCAAGAAAGGTCGATGAAAGAT GGAAAGAGTTTATGAAAGAGCAGATTACAAGGGCAAGATTCTACTTCAATTCAGCAGAGGAAGGAGCTTCTCAGCTTCAA AAGGACAGCCGTTGGCCAGTTTGGTCCTCACTGATATTGTATCGCAAGATCTTGGATGCAATTGAAGACAATGATTATGA CAATTTGACGAAAAGAGCCTATGTAGGACGAACTAAGAAACTTTTGACGTTGCCTTTAGCCTATACTAGATCTCTCTCCA TTGCCACAAGGAAATTTCATCCTTCATTGGCAAGGAATAACTTGCAAAATTAG
Protein sequence (LotjaGi6g1v0036600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLSFSLAAKPSIYRSNRKPCCSRNDVIRSEVTLAPKQRTESMFPLLSKQGVSLADLHVQEVVERQCQTSNFDTLSPCSK PKFEPNFLMDSYEMCRKICAEYAKTFYLGTLLMTEERKRAIWAIYVWCRRTDELVDGPNADYMNSSVLDRWEDRLHDIFN GQPYDMLDAALTDTVSNFPLDIKPFRDMIQGMRMDTMKSRYKNFEELYLYCYYVAGTVGLMSVPIMGISPESLISAQSVY NAALHLGIGNQLTNILRDVGEDALRGRVYLPQDELAQFGLCDEDVFSRKVDERWKEFMKEQITRARFYFNSAEEGASQLQ KDSRWPVWSSLILYRKILDAIEDNDYDNLTKRAYVGRTKKLLTLPLAYTRSLSIATRKFHPSLARNNLQN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 378 | 378 | 7.1E-211 | – | |
| PANTHER | 1 | 378 | 378 | 7.1E-211 | – | |
| Phobius | 1 | 206 | 206 | - | – | |
| Gene3D | 83 | 364 | 282 | 1.1E-99 | ||
| SFLD | 89 | 370 | 282 | 0.0 | – | |
| SFLD | 89 | 370 | 282 | 0.0 | – | |
| SUPERFAMILY | 90 | 373 | 284 | 5.04E-88 | ||
| CDD | 93 | 360 | 268 | 1.45695E-101 | ||
| Pfam | 102 | 357 | 256 | 4.2E-69 | – | |
| Phobius | 207 | 228 | 22 | - | – | |
| ProSitePatterns | 210 | 225 | 16 | - | ||
| Phobius | 229 | 390 | 162 | - | – | |
| ProSitePatterns | 246 | 271 | 26 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Farnesyl-diphosphate farnesyltransferase activity | Catalysis of the reaction: 2 farnesyl diphosphate = diphosphate + presqualene diphosphate. | ||
| Molecular function | Transferase activity, transferring alkyl or aryl (other than methyl) groups | Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor). | ||
| Molecular function | Squalene synthase activity | Catalysis of the reaction: presqualene diphosphate + NADPH = squalene + NADP+ + diphosphate. |
Expression pattern of LotjaGi6g1v0036600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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