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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0036700 |
| Transcript ID | LotjaGi6g1v0036700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT5G39980.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FLD8|PP408_ARATH Pentatricopeptide repeat-containing protein At5g39980, chloroplastic; TrEMBL-Plants: tr|A0A0L9TA95|A0A0L9TA95_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0036700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:7294062..7300326) extracted from Lotus japonicus Gifu genome v1.2.
TCAGAATTTGAAACTAATGAGTCAAAAACTAATGCTACAATCCTTTTAGCGTCGGTAAAACAGCCGAATCTAACACGTAG AGTCAATCAAATGGTCAACACAATATATCACTCAACTGTTACCATTTTGAGTTATTCTTCAGAAACATGGTTGTTATTAA ACATTCTTTCCTTTATTTGTTTAAATTATAGACGGGGAAGACAGAAAATATCAAAATACCCACTTTATATCTCTTTTCCT CAAAGGTTAGATATTAAAAGCCACAAAATCAAAATCTGAACACTTCCATAACATCAGCAATACCAGAAATAACCAAAACA CTCACACATAACATAAGCTTCACTTCAGAAAGAAGATAGCTAGTCACTTCATCAATTATGTGCGCAGTTACTTGTTCAAT CCTTGCTTCCTGGCCTTCTTTTTCTTCCTCTTCATTCCCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCCAAAACCACCT TCACCATAACCACAAACCCGAGCTCTATTGCCTCAACAACCGTAGCAGCTACAGTCAAAGATGTCTGGACCCGAACAACA CCATCGCCATATCACCGCCGTACCAGAACCCAACAGCAAATGTTCCTAGACCACAGCATCGACATGGATGAACTACTAGC CTCAATCAGCTCCACCCAGAACGAGCAAGAGCTTCACGCTGTGATGTCGCTCTACAACCAGAGACAGCTTTCCATTCGCT TCATGGTTTCCCTCCTCTCCCGCGAAACCGATTGGCAGCGCGCATTGGCTTTGCTCGATTGGATCAATGAAAAGGCTCTT TACTCGCCCTCGGTGTTCGCCTACAATGTTGTTCTTCGCAATGTGCTGCGAGCGAAGCAGTGGCACCTTGCACACGGACT GTTTGATGAAATGCGCCAGAGAGGACTTGCCCCTGATAGGTACACTTACTCCACGCTCATTACCCATTTTGGGAAACATG GCTTGCTTGATTCCTCTTTGTTCTGGCTGCAGCAGATGGAGCAAGACAATGTGTCTGGTGACCTTGTTTTGTATAGTAAT TTGATTGAGCTTTCGCGCAAGCTGGGTGATTATTCCAAGGCGATTTCCATTTTTGCCAGGTTGAAAGCGTCGTCTATTGC CCCTGACCTCATTGCTTATAACTCTATGATTAATGTGTTTGGAAAGGCTAAGCTCTTCCGTGAGGCTCGTCTTCTTCTAC AAGAGATGAGGGACAACGGTGTTTGCCCTGACACAGTTAGCTACTCTACGCTTCTTGCCATTTATGTAGACAATGAGAGG TTTGTTGAGGCGCTTTCTGTTTTCTCTGAAATGAATGATGCCAAATGCCCGCTTGATCTCACCACTTGCAATATTATGAT TGATGTTTATGGTCAGCTTCACATGGTCGAGGAAGGCGACCGCCTGTTCTGGAGCATGAGGAAGATGGGGATTGAACCCA ATGTTGTTAGTTATAATACGCTCTTGAGGGTTTATGGAGAGTCTGAGCTGTTCGGGGAAGCTATCCATCTGTTTCGTTTG ATGCAGAAGAAGGGTGTGCAACAGAATGTTGTCACCTACAATACTATGATTAATATTTACGGCAAGTCTCTTGAGCATGA GAAGGCTACAAATCTCATTCAAGAAATGCAGAATAATGGTATTCAACCAAATGCTATCACCTATTCAACTATAATATCTA TCTGGGAGAAGGCAGGGAAACTGGACAGGGCAGCCATGTTGTTTCAGAAATTGAGGAGTTCAGGTGTTCAAATTGATCAG GTTCTGTACCAGACAATGATTGTAGCCTATGAGAGGGCAGGTTTGGTTGCTCATGCTAAGCGCCTTCTTCATGAGCTCAA GCGACCTGACAACATTCCCAGGGAAACTGCAATCATGGTGCTTGCTCGAGCCAGGAGAGTTGTAGAGGCTACATGGGTTT TTCGGCAGGCTTTTGCTGCTGGAGAGGTAAACGATATATCTGTGTTTGGGTGCATGATTAATCTTTACTCGAGGAACAAA AAGTACACAAATGTAGTTGAGGTGTTTGAGAAGATGAGAGAAGTTGGATACTTTCCTGATTCCAATGTTATTGCCCTCGT GCTGAATGCTTTTGGGAAGCTACGTGAGTTTGAGAAAGCAGATGCTTTATACAGTCAAATGCATGACGAAGGATGTGTTT TTCCAGATGAGGTTCATTTCCAGATGCTTAGTCTATATGGTGCAAGAAAGGATTTCACAATGGTGGAGTCATTGTTTGAG AAGCTGGATTCCAATCCCAATATCAACAAGAAGGAGTTGCATCTTGTTGTTTCCGGCATTTATGAAAGAGCAGATAGACT TAATGATGCTTCTCGAATCATGAACAGGATGAATCACAAAGCAATCGGAAATCATGATCATGCTTAGAAGCATGCATGTG ACCTTTTGTGTATAACTTGTGTGCTGTTTATGAGTATTGTTTTTCCCCTGTTCACCCATAAATGCTGTATTCTGAAAACC TACCTCAAACCTACCTCATTCCCATTTAGTATCCTCTGTATATATGATGTCAAGCAACAACACAGGTTCTGAATAGCAAC ACCCTTGTGAATAATCTTACAGTGTTATACATCCAGGCTTATGAGGGCTTTCTCTTTTTCCTGTGTCCTTCTGGGAAAAA AATTATTAAAAATCGAGTCCCTATTTTCTCTTTAGAGAAAGTTGAGCCGCTTCTGTTAATATGCTTCCTTAGTATCTGCT GAGAATTTCAACCGCAGATGTATTTGAAAACAGTCAATATCTGTTTCTCTTTGAAAATCAACACTGTATTGAGGAAGACT CTAAGATGTTATTAGTGTAACCCAGTTTAAAGCTTTGATGTATGTACGCTGTTGTCACTTGTCAGTGCTTTTGTGAGTCA GAACACTTGCCATATTTGATTAATTGTGAATCTAGAGCCTTTTGCTATACATTACTATAGGCTTTGTCTAGGGTGAACCA TCAGATGATACGGTTCATCAATTTTCCATAATTAATTACAATGAGATTTATTAATTAAAAATTGGCGATGAATTTAGAAT AAATATCTGCATGACTGGTTATCTATGTATTGGAAACAATTCTGCAAGTTCGTTGACAAAATCGTTAATAGAAACTGCTT TAACTTATGTGTATGTAAAGTCAGATATTGATTTATCCAGCAAAGAGAATGAAAGTTATGGAAGCTGCTGTTCCTCTCCC ATACACATTGATCAATGGCCAACACTTTCACACAGAATTATTTAGAAGATTTTACGTTAACATTATGGTCTGATAGTAGG AAAGGTGCTCTAACTTGCTTAGTTGTGTAAATGTATTTTATGTAATACAAGTCATGTCATTCTATTGCAGATGTGACTCA TTTTATATCTTTTGTGCACTAGCTGTGCCTTCTTGACATGTTATATTGAATTTCTCAGTAGATAACACATATTATCAAAA GTAAAAAGTCTAGTATGAAAACATTGGCTGAAACCATTGTTTAAACTTTAAAGGACTTCTATTATTGGTAAACTTTTGCA GTTATAAGCTTTTATGTAATCTGTTGCTTCTTTACAGAAGGAAGTTAGATCAAATAATGCTGATAGTGGGAAAAATTACC ATAAATCTCAATAGAGTACCCTCCAGATGGTTGTATTTAGAGGAATTCTTCTCGTTTCAGTTTGTGCTGAAGATCCTCGC ACTGCATGGAGTGCAGCAGCACATCTTCTTAGATATATGCAATCATCCTCTAATAAAATCCTGCTGGGAAAATTGCCTTG CTAATTCACTTTCGACTTCAGCTGTGAGGCTGCTACCAAGGTATCATTGTTCTGATCCTGCTTTACTTTCTTGAAGGTAT TTACTTGGTTAATATTTCCTTTCAAAAGTGATATTGTGTTGTCATCATTTTAATGCCAGTTGATTTGTACTTATGTAAAG TGAAGTCAGAATTAATTTAGCATTTTCATATTAGAAGTATTTATCACCATTGCAACACTTGATTTTGTGAGCAACGAATA TAATGATGCATTTTACCATTTAAAGTGAACCCAAAAATTTAGAGAAGCCTAGTCTATATTTGACAGCGGAAAACCGATCT AGTTGCTCTCTTGAATGAAAAAATTTCAAAACTTTCAGATTTTCCTTTTGTTTGCTGAGCCCCCAGAGGAAAAGGAATTT CCCCATGGGAATTCGAAATCATATATCCTTTGCTTTGGGGTCATCAAGATTTTCAAATGCTAACTTGGTCAACTCCATAA GTTTTGGACAGCTAACACAAATAGCAATTTAGTAACTGATTGCTTTCAGGCTGCATTCATTTCCTCTTGTAACCTGAATA GACATTGTAAAATGTAACCCAGCTAGGGAAAACTGGCTGGCCGAGTGCTTCTATTTATACACCATTTAGTAAGGAGGAGT GCTAGCACCACATTCTCACACACTCTTTATGATTGATCTATTTCCCAAATAGTCAACATATGTGTCGTTAGCATTTCTCT TGAGTCATAGGGAGCCAGATAATATGAAGAATCAAAAGCTTAATTGGAAAACCTCAGAGCCTATCCAGTTCTTGTTGTCC ATGTGGCTTTCATTAATTTTTTATCTTATATCTGTCATCCAGAAATTTTTTATGCTTTCTGAGTGAGTAGAAGCCTTCTA CCAAATTCTGCAAAGCGTATAACCTTTTCAAGGAATCCCAGCTAAGGGGGGTCGAGTTCCAATTCCTGGATGCATAGTTC AGTTTATTTGTTTTGGTGTTATTACTAAATATTTGTTTAGAGAGGTTGAAAATCTGCTTCTTCACAAGGGCTTATCCTTT CAGACATTTTTTTATGTTGGAAATCTCCAAAAATGAAGAATGTATCTGTTCCAAATATCTTTGATGTTTCAAATGTTTGT GCTGGAAGTTCTGGTCCTTCATAATGTTTGAAAGAAATTTATGTCATATGAGTTAGTTTAGCTAATCCGAGCATTGTTAC AATTGAGCAGGCACATTTTTTTACCATCAGGGGAAAATCAGGATTCTATATTTTCATATTCTTTGAAGACTTCAAAATCT TGACTCCCTCCAGAATTTGGAGCAGAAGTAAGGCAAGTGGCATTGCCTCTAACCTTGAGACCCTTGCAAGTTGGTTAGGT GGATGCTGAAACGTTCTGAATTTTAGATTCCGGAACACAGGTATGGTTCTTTGGATTTAATTTTCAGATCTTTCGTGGAA ACTTATTTCAGGTAACTACTTTTCTGTTCTAGAAGGCCTACTTTTCGGAAATATAGATTACATTACATGTTATGTTAAAC CAAACTGCCTGAAATTAGATTCAGATTTATAGTTTAAGAGCTGAGACTAGATTCAGGAAGATTGTGTTTCCTGAAATTAG ATTCATGATAGTAATAATGTTTATGATATTACCTGAACCAAAATTTCAAAATATAGTTCTAATATTGGATTTCGAAATTT TGATTTCAGGAACAATACTTTCGGAGATGGTGATAAGTGAGAGGATGGTACAATAGTTTGGCCCTGATTGAACTACCCTC TTTCCTGTACTAAGCTGAGTTTGTGCATATCTTTTTTCCTCTTTTTTTAGGCAAATGTTAGTGGTTAGTAATGTTATTAT GTTAGTAAGTTAGTTCCTTCACTAGGGTTTGAACCCTGACCCCTTCTTCAGCCTTCATTCCCCCCCAACTCTTATGTCCA CTAACTCTTACTACTTAAGTGAACCCTCGGAGAAGAAGCTGTAAGGTTGTAGTTGCCAACCCATCAGTGCTACTTATTTT TTGTAGATCACCAGTGCTACTGTTAGACTCATTGTTTAGCCTCGATTGTAATGAAACCAAAGTGAACCAGTAGGGTAAAA GGTAAATCTGAAAGTCTAGATGCCAAGATAAAAGGAACGGTAAAAGTAACCATAGTCAGTTCTATTGGTTATAGATTTCT TTATGACTTGAGTTACCTAAACCACTTGGAAGTATTCATGCTGAGAGGATGTGGCCTCAACGAAGCCCTACCAATGAAAG GTATCAAAGTTTGATATAAAGGTAATAAATATTCTTACCTATATGTCAGGATTGGAATTGTAATGCAACCATTTGACCAG AGAGATTCCTTCTTCAATAGGAGAAGGTCATGGTTTTAATTTTATAAATATATTTCTCAATAAACGCCTTTCTCGATTTC TTGACTTGAAAATATAAGTGTTTTTTCTTTTTTTTGAAACAGTGTGTTTTCTTGAATATTAAATGATCAAGCTTTGCACT ACTGAATTCACTCTTTTAATCTCAG
CDS sequence (LotjaGi6g1v0036700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGCGCAGTTACTTGTTCAATCCTTGCTTCCTGGCCTTCTTTTTCTTCCTCTTCATTCCCATCTTCTTCTTCTTCTTC TTCTTCTTCTTCCAAAACCACCTTCACCATAACCACAAACCCGAGCTCTATTGCCTCAACAACCGTAGCAGCTACAGTCA AAGATGTCTGGACCCGAACAACACCATCGCCATATCACCGCCGTACCAGAACCCAACAGCAAATGTTCCTAGACCACAGC ATCGACATGGATGAACTACTAGCCTCAATCAGCTCCACCCAGAACGAGCAAGAGCTTCACGCTGTGATGTCGCTCTACAA CCAGAGACAGCTTTCCATTCGCTTCATGGTTTCCCTCCTCTCCCGCGAAACCGATTGGCAGCGCGCATTGGCTTTGCTCG ATTGGATCAATGAAAAGGCTCTTTACTCGCCCTCGGTGTTCGCCTACAATGTTGTTCTTCGCAATGTGCTGCGAGCGAAG CAGTGGCACCTTGCACACGGACTGTTTGATGAAATGCGCCAGAGAGGACTTGCCCCTGATAGGTACACTTACTCCACGCT CATTACCCATTTTGGGAAACATGGCTTGCTTGATTCCTCTTTGTTCTGGCTGCAGCAGATGGAGCAAGACAATGTGTCTG GTGACCTTGTTTTGTATAGTAATTTGATTGAGCTTTCGCGCAAGCTGGGTGATTATTCCAAGGCGATTTCCATTTTTGCC AGGTTGAAAGCGTCGTCTATTGCCCCTGACCTCATTGCTTATAACTCTATGATTAATGTGTTTGGAAAGGCTAAGCTCTT CCGTGAGGCTCGTCTTCTTCTACAAGAGATGAGGGACAACGGTGTTTGCCCTGACACAGTTAGCTACTCTACGCTTCTTG CCATTTATGTAGACAATGAGAGGTTTGTTGAGGCGCTTTCTGTTTTCTCTGAAATGAATGATGCCAAATGCCCGCTTGAT CTCACCACTTGCAATATTATGATTGATGTTTATGGTCAGCTTCACATGGTCGAGGAAGGCGACCGCCTGTTCTGGAGCAT GAGGAAGATGGGGATTGAACCCAATGTTGTTAGTTATAATACGCTCTTGAGGGTTTATGGAGAGTCTGAGCTGTTCGGGG AAGCTATCCATCTGTTTCGTTTGATGCAGAAGAAGGGTGTGCAACAGAATGTTGTCACCTACAATACTATGATTAATATT TACGGCAAGTCTCTTGAGCATGAGAAGGCTACAAATCTCATTCAAGAAATGCAGAATAATGGTATTCAACCAAATGCTAT CACCTATTCAACTATAATATCTATCTGGGAGAAGGCAGGGAAACTGGACAGGGCAGCCATGTTGTTTCAGAAATTGAGGA GTTCAGGTGTTCAAATTGATCAGGTTCTGTACCAGACAATGATTGTAGCCTATGAGAGGGCAGGTTTGGTTGCTCATGCT AAGCGCCTTCTTCATGAGCTCAAGCGACCTGACAACATTCCCAGGGAAACTGCAATCATGGTGCTTGCTCGAGCCAGGAG AGTTGTAGAGGCTACATGGGTTTTTCGGCAGGCTTTTGCTGCTGGAGAGGTAAACGATATATCTGTGTTTGGGTGCATGA TTAATCTTTACTCGAGGAACAAAAAGTACACAAATGTAGTTGAGGTGTTTGAGAAGATGAGAGAAGTTGGATACTTTCCT GATTCCAATGTTATTGCCCTCGTGCTGAATGCTTTTGGGAAGCTACGTGAGTTTGAGAAAGCAGATGCTTTATACAGTCA AATGCATGACGAAGGATGTGTTTTTCCAGATGAGGTTCATTTCCAGATGCTTAGTCTATATGGTGCAAGAAAGGATTTCA CAATGGTGGAGTCATTGTTTGAGAAGCTGGATTCCAATCCCAATATCAACAAGAAGGAGTTGCATCTTGTTGTTTCCGGC ATTTATGAAAGAGCAGATAGACTTAATGATGCTTCTCGAATCATGAACAGGATGAATCACAAAGCAATCGGAAATCATGA TCATGCTTAG
Protein sequence (LotjaGi6g1v0036700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCAVTCSILASWPSFSSSSFPSSSSSSSSSSKTTFTITTNPSSIASTTVAATVKDVWTRTTPSPYHRRTRTQQQMFLDHS IDMDELLASISSTQNEQELHAVMSLYNQRQLSIRFMVSLLSRETDWQRALALLDWINEKALYSPSVFAYNVVLRNVLRAK QWHLAHGLFDEMRQRGLAPDRYTYSTLITHFGKHGLLDSSLFWLQQMEQDNVSGDLVLYSNLIELSRKLGDYSKAISIFA RLKASSIAPDLIAYNSMINVFGKAKLFREARLLLQEMRDNGVCPDTVSYSTLLAIYVDNERFVEALSVFSEMNDAKCPLD LTTCNIMIDVYGQLHMVEEGDRLFWSMRKMGIEPNVVSYNTLLRVYGESELFGEAIHLFRLMQKKGVQQNVVTYNTMINI YGKSLEHEKATNLIQEMQNNGIQPNAITYSTIISIWEKAGKLDRAAMLFQKLRSSGVQIDQVLYQTMIVAYERAGLVAHA KRLLHELKRPDNIPRETAIMVLARARRVVEATWVFRQAFAAGEVNDISVFGCMINLYSRNKKYTNVVEVFEKMREVGYFP DSNVIALVLNAFGKLREFEKADALYSQMHDEGCVFPDEVHFQMLSLYGARKDFTMVESLFEKLDSNPNINKKELHLVVSG IYERADRLNDASRIMNRMNHKAIGNHDHA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 30 | 30 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 16 | 16 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 2 | 12 | 11 | - | – | |
| Phobius | 13 | 30 | 18 | - | – | |
| PANTHER | 29 | 380 | 352 | 2.1E-96 | – | |
| Phobius | 31 | 669 | 639 | - | – | |
| Gene3D | 85 | 226 | 142 | 2.0E-25 | ||
| ProSiteProfiles | 109 | 143 | 35 | 5.119 | ||
| Pfam | 144 | 191 | 48 | 1.1E-12 | ||
| ProSiteProfiles | 145 | 179 | 35 | 10.885 | ||
| TIGRFAM | 148 | 180 | 33 | 7.1E-6 | ||
| ProSiteProfiles | 180 | 214 | 35 | 9.032 | ||
| SUPERFAMILY | 203 | 464 | 262 | 1.07E-5 | – | |
| ProSiteProfiles | 215 | 249 | 35 | 9.01 | ||
| Gene3D | 227 | 377 | 151 | 2.2E-39 | ||
| Pfam | 249 | 293 | 45 | 8.4E-11 | ||
| ProSiteProfiles | 250 | 284 | 35 | 12.178 | ||
| TIGRFAM | 253 | 286 | 34 | 2.1E-9 | ||
| ProSiteProfiles | 285 | 319 | 35 | 9.997 | ||
| TIGRFAM | 287 | 320 | 34 | 3.1E-5 | ||
| PANTHER | 301 | 570 | 270 | 2.1E-96 | – | |
| ProSiteProfiles | 320 | 354 | 35 | 11.378 | ||
| Pfam | 320 | 365 | 46 | 8.8E-10 | ||
| TIGRFAM | 323 | 356 | 34 | 8.0E-7 | ||
| ProSiteProfiles | 355 | 389 | 35 | 11.115 | ||
| TIGRFAM | 357 | 390 | 34 | 1.2E-6 | ||
| Gene3D | 378 | 490 | 113 | 3.8E-29 | ||
| Pfam | 390 | 433 | 44 | 1.7E-14 | ||
| ProSiteProfiles | 390 | 424 | 35 | 12.178 | ||
| TIGRFAM | 392 | 426 | 35 | 5.5E-8 | ||
| ProSiteProfiles | 425 | 459 | 35 | 10.249 | ||
| TIGRFAM | 427 | 460 | 34 | 8.0E-4 | ||
| ProSiteProfiles | 460 | 494 | 35 | 8.955 | ||
| Pfam | 462 | 489 | 28 | 0.082 | ||
| Gene3D | 491 | 669 | 179 | 2.9E-20 | ||
| ProSiteProfiles | 526 | 560 | 35 | 10.633 | ||
| TIGRFAM | 529 | 561 | 33 | 2.5E-5 | ||
| Pfam | 529 | 557 | 29 | 3.6E-4 | ||
| ProSiteProfiles | 561 | 595 | 35 | 8.638 | ||
| TIGRFAM | 568 | 597 | 30 | 2.2E-6 | ||
| Pfam | 568 | 593 | 26 | 0.025 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0036700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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