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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0037500 |
| Transcript ID | LotjaGi6g1v0037500.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP dependent RNA helicase; TAIR: AT2G42520.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q84W89|RH37_ARATH DEAD-box ATP-dependent RNA helicase 37; TrEMBL-Plants: tr|A0A151SQC4|A0A151SQC4_CAJCA DEAD-box ATP-dependent RNA helicase 37; Found in the gene: LotjaGi6g1v0037500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:7386458..7390670) extracted from Lotus japonicus Gifu genome v1.2.
GCTGATTTGGCTGCGAATTCCGCGGCCGAGAACAACGCACCTTCTTCCGCCACCAACAACTCTCAAGCTCCAACCCGTCC TGCTTATGTGCCTCCGCATCTCCGCAACCGCCCACCATCTCACCACTCTCCGGCGGAATCCTCTGCTCCTCCTCCGGCCG CCGCTCCCCGCTGGGGTGCGCCCAGGGATGATTACCGTTCCTCCGGGCCGCCCCGATGGGGCGGCAACCGGGGCGGAAGG GACCGTGAAGTCAACCCGTTTGACGATGTGGAGGATGTCCCTGAGGAAGCGTTTGGTGACCAGGAGAACACTGGGATAAA CTTCGATGCGTATGAGGATATCCCTGTGGAGACTAGCGGCGGGAACGTGCCGCCGCCGGTGAACACGTTTGCGGAGATCG ATTTAGGGGATGCGCTGAATGAGAATATTCGCCGCTGCAAGTACACGAGGCCCACGCCGGTGCAGCGGCACGCCATTCCG ATTTCCTTGGCTGGGAGGGACCTGATGGCGTGTGCACAGACCGGGTCGGGGAAGACGGCGGCGTTCTGCTTCCCCATCAT CAGTGGGATCATGACGGGCCAGCCTGCACAGAGGCCGCCTCGCGGGGTGCGCACGGTGTATCCGCTTGCCCTCGTTCTGT CGCCGACTAGGGAGCTGTCGATGCAGGTGAGTTTTGGTTTGTTGTTTGCTGTGTTGGGACATGCCTTTTTCAATTGGGTT ATATATCTGAAATGTTGTCATTTGGTTTCAGATACACCAAGAGGCTAAGAAGTTCTCATACCAGACTGGGGTTAGGGTGG TTGTTGCTTATGGTGGAGCTCCAATAAACCAGCAGGTTTCTCTCTTCTTGTTCTTTGTTTTGTTTTTCTTAGAATTAATT AATTGTGCTATTCTTTTTACATGCTTCAATTATTGTTATCTATTTTATTCTGTTCATTGATTAACATGGATGACTCCACA TCGTGCGATATAAGGCTAGGTAGTTGTTATTCTCACAGATGTTTCTGTTGATTCTGAAGCTTTTGTAGTGGTTACTTTAG ATTGTTGCATCCATAATTCACATTCATTGATATCAGAGGGATTTCTGATATACATAAGGATAGGAGTTTGTGAACTACTG TATCTATTGAACAAATTAACTATTTCAGGACATTGCTAATGAACTAATCATTTTCTGAATAAAATTTGCGAGTATGTTTA AACTTTATAAAATAAATGTTACTCTAGCTAGGATGCTCTGGAATTTGTGTTGAATATGTCCAATATGGGCTCTGGAATCT AGAATATATTGTTCTCGAATGACCAATCTTATTTTACTTTTGAATGCTACTATGAACGTTTCTATTTGGTATAGATTCTA ACTGTATAAATTTTTCCAGCTACGCGATCTTGAGAGAGGTGTGGACATTCTTGTTGCAACTCCAGGAAGACTGGTAGATT TGCTGGAGAGAGCTAGAGTCTCACTGCAGATGATCCGATATCTGGCCTTAGATGAGGCAGATAGGATGTTGGATATGGGT TTTGAACCACAAATACGGAAGATTGTGGAACAGATGGACATGCCTCCACCAGGTTCCAGACAGACTATGCTGTTCAGTGC CACGTTTCCGAAAGAGATACAGGTTTGATTCATTCTCCAGAGTCATACTTTTTTCAGGGAAGCATCCTTATAATATTCCC TTACCATTTTAGGTTGTCCAAGACGTGTTTTCCTTATGTACTTGTGCTGAGGAGTCTTAGCTCTCACCCTTTTATCCTGT AGAAAATTTAAGTACTGTTGAGAACTTTGGATTAAATAATGGAAATTTCTGATTTGTGTTGAGGGAATAAGTGGCTTGAG ATGTATAAATAACACATGAATACTCTTTGATGTGGGATAAGTAGGCTCCTCATTACATCTGACTTTTGTTGTGATTTACT GTTGATATGCAGAGACTGGCCGCTGATTTTCTTTCAAATTATATTTTTCTGGCTGTTGGAAGAGTGGGCTCAAGTACTGA TTTAATTGTCCAAAGAGTTGAGTATGTTCAAGAGTCTGACAAGAGAAGTCACCTCATGGACCTTCTTCATGCACAGAGGG CAAATGGTGTACAAGGAAAGGTATTCTCGCAGTTCTCAGAAAGTGCATTTCTCTCATAAAACTTATGAAATGTATCTGTG CTTTTTGGAAACTAAAACGTGAAAGTATAGAAATGCACCTTTCCAATGGTTTATTCAAGTTGTTTCGTCCTCAATCTGCT GCTGAATGCTGATGCATATATGCATTGGTCTTGGGAAATTAACCCAGATCAACTGAAGTTCTGGTTATGGATATAAAAAT AATAATGCTGCGTTAAGTGAGGTGGTTGGTTGGTTTATGATTGCATCTTTTAGTAATATGTGGATCTTTTAACAGTATTC CACATTCTGAAAAAGGTTATAAAGAAATACTTTTGCCTAGTATTGTCTAATAAACTGTCCTGACCCTCTCTGTATGGGTT GCCCTGGTTTATACTTATCCACCCAATACATTTGGCTCGCATCACTTGATCATATTTGTACTACCTCTTTTTGTCATTGC ATATATTCTGTTGTTTATAATATCTTGGCATTTCTCTGTTTCTGTCATGTTTAGCTCTTTCAGATTATACTCACCTCTGG ATAGTTCCACATGGATATATCAGTGTAGTAGATATATAGTTTGGACGTTGTGTTTTCTCACAGTATATACATGCGCTTTC TCTGTAGGAACAAACTCTATTGCTAAATTAGTAAATTATGTTAAGACTTTCATGCTTGATTTTAATTTTGCAGCAAGCTT TGACTTTAGTTTTTGTGGAGACAAAAAAGGGAGCAGATGCTCTGGAACACTGGTTGTGTCTAAATAACTTTCCTGCAACT ACTATTCATGGTGACAGGTCACAACAGGTTAGTCAGTTGTTCAATCATATTTTCCTTTGATGTGCAAATTACTACTCTGC TCTGCTTAAATTTTTCAGTGGACAAGGTCCATCCATACCCCTGGATCCTCATTATAGTGTCTGGTTATAAGTTAGTTAAA TGTGAGATATGAATGACATTAACTGACTTCTATATATTTGTTGCTTTCTCTGCCAATTTTTTGTATTGGGAGAGTACAGT TATGGCGTATCGATGAACCACTGAAGCATATTTCATAATGAAAATTGAAAACTAAAATAAAATAAGATTGAGATATTCAA TTTATTGAACCCTAAATAGTAAGTTGGCATTAGATGATTTTAGGGGTCATCATGAACTTATGCTGGCATTTGGTCTGAAA GAAAGATACCAATTGCATGTCACTCTGTAAATTCTAAGGAACCTAATTCCCGCAAATGTTTTGGAAGGAATTTTTGAAGA ACTTTTTGGTCCACATTGTAAATTTTTTATTCCACTGAATCATTTTGAAAAAATTGTTTTGTTTGAATGACTATTTTTTA GCACCTTGTACATAATAATGATTTCCTTTTTTAAAAAAGTTTGAGGCACCCATACATCTTTTGTAGTTAGTCTGAGTTTT CTATTAGTTTGTTTGAAGCTGAAGCATGGAATTACCATGTCTCAAGGTTAAATGTGGTTACAATTAGTTATTTTTTTAAT GAAATCTCAATTACTTTTCCAGTAGTTATAATGATTATTTTCAAGAGCTTTTTAGCTTGTATCATTTACTAATATATGAT TATGATGTTTTGAATGCCTGCAGGAAAGGGAATTTGCTTTAAGGTCATTTAAGAGTGGCAACACCCCCATATTGGTTGCC ACTGATGTGGCTGCACGTGGTCTTGATATTCCGCATGTTGCCCATGTAGTTAACTTTGACCTTCCTAATGATATTGATGA TTATGTACACCGTATTGGAAGGACGGGGCGAGCAGGAAAGAAAGGCCTTGCAACTGCATTCTTTAATGACAACAATGCAT CCCTAGCAAAGTCTTTAGCAGATCTGATGCAAGAAGCAAATCAAGAAGTACCTGCCTGGCTCTTGCGGTATGCTGCTCGC TCTTCCTTTGGTGGAGGAAGGAACCGTCGATCAGGAGGCCGTTTTGGTGGCCGTGACTTCCGAAGAGAAGGTTCTTTCAG CAGGGGTGGTTCTGATCACTACGGTGCAGGAAACAGCGGTGGTGGATATGGGGCTTCTGGTGGGTATGCTGGAGGATACG GTGGTGGTCCTGGGGTAACCAGTGCATGGGACTGATTTTTCAACTTTTGATAG
CDS sequence (LotjaGi6g1v0037500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTGTGCACAGACCGGGTCGGGGAAGACGGCGGCGTTCTGCTTCCCCATCATCAGTGGGATCATGACGGGCCAGCC TGCACAGAGGCCGCCTCGCGGGGTGCGCACGGTGTATCCGCTTGCCCTCGTTCTGTCGCCGACTAGGGAGCTGTCGATGC AGATACACCAAGAGGCTAAGAAGTTCTCATACCAGACTGGGGTTAGGGTGGTTGTTGCTTATGGTGGAGCTCCAATAAAC CAGCAGCTACGCGATCTTGAGAGAGGTGTGGACATTCTTGTTGCAACTCCAGGAAGACTGGTAGATTTGCTGGAGAGAGC TAGAGTCTCACTGCAGATGATCCGATATCTGGCCTTAGATGAGGCAGATAGGATGTTGGATATGGGTTTTGAACCACAAA TACGGAAGATTGTGGAACAGATGGACATGCCTCCACCAGGTTCCAGACAGACTATGCTGTTCAGTGCCACGTTTCCGAAA GAGATACAGAGACTGGCCGCTGATTTTCTTTCAAATTATATTTTTCTGGCTGTTGGAAGAGTGGGCTCAAGTACTGATTT AATTGTCCAAAGAGTTGAGTATGTTCAAGAGTCTGACAAGAGAAGTCACCTCATGGACCTTCTTCATGCACAGAGGGCAA ATGGTGTACAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAAAAGGGAGCAGATGCTCTGGAACACTGGTTG TGTCTAAATAACTTTCCTGCAACTACTATTCATGGTGACAGGTCACAACAGGAAAGGGAATTTGCTTTAAGGTCATTTAA GAGTGGCAACACCCCCATATTGGTTGCCACTGATGTGGCTGCACGTGGTCTTGATATTCCGCATGTTGCCCATGTAGTTA ACTTTGACCTTCCTAATGATATTGATGATTATGTACACCGTATTGGAAGGACGGGGCGAGCAGGAAAGAAAGGCCTTGCA ACTGCATTCTTTAATGACAACAATGCATCCCTAGCAAAGTCTTTAGCAGATCTGATGCAAGAAGCAAATCAAGAAGTACC TGCCTGGCTCTTGCGGTATGCTGCTCGCTCTTCCTTTGGTGGAGGAAGGAACCGTCGATCAGGAGGCCGTTTTGGTGGCC GTGACTTCCGAAGAGAAGGTTCTTTCAGCAGGGGTGGTTCTGATCACTACGGTGCAGGAAACAGCGGTGGTGGATATGGG GCTTCTGGTGGGTATGCTGGAGGATACGGTGGTGGTCCTGGGGTAACCAGTGCATGGGACTGA
Protein sequence (LotjaGi6g1v0037500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MACAQTGSGKTAAFCFPIISGIMTGQPAQRPPRGVRTVYPLALVLSPTRELSMQIHQEAKKFSYQTGVRVVVAYGGAPIN QQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGSRQTMLFSATFPK EIQRLAADFLSNYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWL CLNNFPATTIHGDRSQQEREFALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLA TAFFNDNNASLAKSLADLMQEANQEVPAWLLRYAARSSFGGGRNRRSGGRFGGRDFRREGSFSRGGSDHYGAGNSGGGYG ASGGYAGGYGGGPGVTSAWD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 415 | 415 | 8.6E-202 | – | |
| PANTHER | 1 | 415 | 415 | 8.6E-202 | – | |
| ProSiteProfiles | 1 | 176 | 176 | 28.032 | ||
| CDD | 1 | 182 | 182 | 4.0384E-131 | – | |
| Gene3D | 1 | 178 | 178 | 9.8E-66 | – | |
| SMART | 2 | 191 | 190 | 5.5E-43 | ||
| Pfam | 2 | 165 | 164 | 1.8E-44 | ||
| SUPERFAMILY | 41 | 330 | 290 | 6.67E-75 | ||
| Gene3D | 179 | 358 | 180 | 6.9E-57 | – | |
| ProSiteProfiles | 187 | 354 | 168 | 22.459 | ||
| CDD | 188 | 324 | 137 | 3.00358E-60 | – | |
| Pfam | 200 | 315 | 116 | 2.1E-29 | ||
| SMART | 234 | 315 | 82 | 4.8E-35 | ||
| MobiDBLite | 363 | 389 | 27 | - | – | |
| MobiDBLite | 368 | 384 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi6g1v0037500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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