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LotjaGi6g1v0037900.1

Overview

Field Value
Gene ID LotjaGi6g1v0037900
Transcript ID LotjaGi6g1v0037900.1
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description RNA-binding KH domain protein; TAIR: AT3G32940.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q54BM5|BBP_DICDI Branchpoint-bridging protein; TrEMBL-Plants: tr|G7JA56|G7JA56_MEDTR RNA-binding KH domain protein; Found in the gene: LotjaGi6g1v0037900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:7424196..7431711) extracted from Lotus japonicus Gifu genome v1.2.

CCCAACTCCCGCACGAGGGGAGGGGGGAGGAGGGGGTTTTGTTTTGTAAAATGCAATACCTGCTGCTTCCATTTTCCCTA TAAACTGTTGCGTATGGCCTATGCAATACAATACAATACAAGGCGAGCGGCAAAGCAAAACCACTTCAGATTTCAGGTTC ATCGGTACCTCTTCAATTCCTACTAGTTTACGCATTCCTGTTCATCTTTTCTAATTTCACAATATGCTTTTTTCTTCTTC TTCGTTTCATGTAATTGTTAAAGATAAATAGAAAATTACACGATTCAAGGGTTTTAGTAACTGATTTGGGTATTAGGGTA TCATAAAATTGTTACTGATTTTGGAGAATATGTGTTCTTCTGTATTGCAAGTTATATAATTGAAGTATTTGAATGAGGGG CATATTAGTGGTATATTAGTAGCTAATGCAAACTAATTCCGGTATCTTTTATCACGTTTAGCTCGCCGTGTGTAAAGTGA CTGGAGAGGAGAATGATTGCGGAGTTTGATCCAACATCTGCTCTTGAGCCTCACAAGATGTCTAGAGCTTCATCGGCTGC ACTTACGAGTGGCCAAAAGCCATCTAAGTTTGCTGCGAAATCTGGATTTGTCATCCCTAAAAACAAATTATCAGGGTCAT TGGTCCCGGTTTTCCGAGGGGCTAAAAAACATGGGGTCACCGGAGGAGCCGTCAATGAAGAAAGTTTGAAACAAATTGAG AGGGTTACAAAATGGGGACCTGATCTGACACAAGATGCTTCTGTCAAGAGAGCAAAGGCTATGGCTCTGCAGGTGTTTTC TGGAATCCTTTGAAAACAATACTCAATCAACATTTCTAAAGATTTATATTGCTTTATAAGTTATGATTAAAACGGTCACG TGTTACTGTTTTTTATCCGTTTTCTTCAAGGCTGACGTTGGTGACTTTTTCTCACTGTTGCACACATTTTGTAGATTCGA GTGGATCAGATTACGAAGCAGTTAGAATCAGAAGAATTACAAATTGGGGACACTCAAAACTTGCCAATAGCTTCTGAGAA CCCAAATCAGAGCACATCTGGCTCTGACATGAACAGCAAGGTTAGCAACAATTGATGCTGTTCCGTTTTATTGTTCACTT TCGGTCATTGTGTATCCACTATCCACTCTTAAATAGACTACTGATATTTATTTATGGATCTAAGAAGTCAGAAATGCTCG AACTTGAAAAACGGGAAGCAATAGGTTTGTTTTCTGTAAAGCATATCTTTCCTTTTTGTTCCTCCCTTATAATTCTTATC AGATTCTTATTCCATGATGATAATCGTGATCTTAATCATTTCCAGGTGAAATACTAAAATTAGATCCAAGTTACAAGACT CCACCTGGTTTTAAACCATTGTTAAAAGAAGCCAGCATTCCTTTACCTGTAAGTTTTCGTGCTGAAATTTTGCTAGACCT GATTTTGTACTATTTATATTCGACTTTTAACTTGTATGAAAACTAAAAGATACATTTCCTGTATACAGAATTCAACATCA TTTTTTATGCATCTAGCTTGTTTTGTACAATTTTGATTCCTGTTTTAGGTGAATACTTATATATTTAGTATTCTCATGCC TTGTCAACTCCGTATTATCATTTAGGGTGTGGCTGAGGTTACTTGGGTCTTGCACTAATTTTTCATGCTATGAGGTGCTG AGGCAACTTTTTGGAGATTAACCTTAGTTTGATTTTTAGGTGGCGAGGCCTTATATTATTTCGTTATGAGTTTCACTTAG GGGTTCATGGTATCAACTTGAGCATGTGACAAGCACGAATTAATTGACAAAAGCGATTTTCTCGCCTCCAGAGATTTTTC TTTTCTGAAAATGACCTTCTCACCCTTTTCCCTTGGCTTCATTCATGAATATTCATGTTATTGAAGGGGCTCGTATTCTT GAGAGTAAGTAGAAAACACTTGATTGCTTGAGAGAAACCCCCTTATCATACTTGTATTAGTTGTATATAATGACAAACTA ATCACAATTTAAATGCAATTTAAACACCTAAATCTCTAAATTTTGGGGATTGACATGACACATCTTCTAATTAGAACACA ATTATAATCCTATTTTGATTTGATAAACCTTATCAACAATTATAACCCTCCCTATCAAGTCTGTGCATATATATCGTGTG CATCAAGCTTGTTACATATACATGTTAACCTTGGAGTCCGAAGAGACTTAGTGAGTAGTTGGCTATCGGTCATTAGAATT CGCAAAAGATGTGATCATGTATCCTGAAAAAATCATTTCTCAATCAAAGTGATACGGATGCCTTCATAGGCCGAACGTAT CGTAGGAATAAAAGATAAGGATTTAATTCCTATTATTTTAGGAGCCTATTTCTGGATATTTATTTTTGTTGTTATTTCCT TATTAGATAATATTTAATCATCTTTCATAATAAGTTAGCATTTTATTGTTTCTTATCTTATAAGATAAGATCTTAGGGAT TTTGTTTCTTAATTTGATACGATCTAGTTTCCTATTTTTCTTGTATTTCAATCTTTATAAAATAAGGGGATTGCTGAATT GAACGTTATCAATAAAGAAATTTCTTAAGAACCATAAAGTTTGAAGATGCTCTGTCAAGGACGAGCCGCTTCTTTATTTT CAGTCTGGGTTGCAAGAAGAATACTCTTGCTTCTAGACCCATGATCAGATCCTCCGCAAAGGGACAGAACACAAAGTGAC AACAATCTCTATGTGCTTAGTCTTCTGACCGAATACTGGGTTGGAGGAAATGTGTAAAGCTTCTTGATTATCACAGATTA ATTTTGTAGAGCCTATTTAACAGAACTTTAGCTTTTGAATTAATTGCTTCAACCATGCCTAGTTTATGGTCAACGTCCTA GTTTCTTCCCAAATGTCAAGAGTATACTTCCTTATGGCAATACCGGATTTTGGATGGGCCACCTCATTCCCAACTAAATA TCATAGTCGTCCCAACTCCTTAGTTTGGAATCGCCTAGCTAAGTATTGCTTTAGAATTTTAATTGCTTCATGATCACTAC CTAGACCACATGTAGATGCAATGCAATCATTAAAGGATGAGTTTGTGATCTGCTTTATACCAAAATGATCTACAACTATG TTAAACCTTCCAAACCATGCTCGCAGAGATTCCTTACTCCATAAAGGGATTTATGTAATCGAAAAACAAGACTAGACTCC CCTTGAGCAACAAAACCTCTCGTGGTTACTGATTCCCACCAAGTTACCATATATAAATGAATTTTAATTTCCAGTTGATA TAATGGCCAATGGGGAGAAAAAGGCGGACTGAAGCCATTTTAGCAACAGTAGGGTGTGTACCGTAATCAGTTCAAGAAAT TTGTGTGTAACCTTTGGCTACAAGACAAGCTTTGAGTTGGTTCTCTTGTTCGTCAGGTCCAACTATAGTAAAGATCCAAT GGCGACCAACTACAGATATTCCAGGAGGGAGAGGAACTAGATTGCATGTTTTTTTATCCATCATAACTTGCCACCATCTT GGATGAGATAATACTTCCGCAATAGTTTTAGGAGTGGAAGCAGTTGAGAGCAGAAACTAAGGCACAATGGGATGATGAAA GACATGATAGCTGAGAAAGCTATAAATGGGACAAGGTTTATAGATAGAACGTGTACCTTTGCAAAAGACTATGGGAAGAT CATCAGAAGATGATGTTATGGAGCTAGTGTAGGCGCATCAGCAGAAGCCAAATCACCTAACTCAGGACGGGGAAGCCACC AAAGGTTCCTCAAGACAAGGCTAATGATGATAGGTTAGAATGTACATGATGAAGGCAGGGCTTCTTGGCCGATACCTTGT AATAGAAGATATAGGTGGATCCAGATAGAGATAGGTAATACCTGGGAGATGGAGTCTTTCTTAGTTGGGGACATGTAAAA CTCTGCATGGAAGGAGAATAGCACTGACCTCCCTTTTAAACCCGAGAATACCCCAAAAAGATATATTTCACATAATAGAC TCATTTAATAGCATCAATTTCAGCCTTGATTATAATAATCCTTAATTTTTAAAAATAAGCAAGTTTCATTTTTTCGTTTT TTCTAAAGTTTTCTGCCAGAGCTCCACTTTCCAAGGAGAAAAGGTGCCCAAAAACCAAAAACTACCTTAGTCAGATACTA CTTGTTGGATAGTTTTAAGAAAGAACTATTAGAGATTTTTTAAAACAAAATAATCTTTATCTAAACACGAATTATGGAAT ACAATGAAAACTCTTATATTCAATGCCATCTGTACAGGTCCAAGAACATCCTGGGCACAAATTTATTGGTCTAATATATG GACCTGAAGGTGATACTCAAAAGCGACTAGAAAAGGTAAGATCATTGTTTTGGTATCTAATCTTCATCCATTGATCTGCA GTTCAGCAAGCTCTATCTTCTGATTGAGATCATTAAGTTAAGTTTTGTTCATTTTTTCTCTGATATATGAACATACAACA TATATCAGGAAACTGGTGCGAAGATAAAAATTCATGGAACCAGAGCAGATACAGGAGACAAAGTAAGTTCCTTAATGATG TTATGTGGCTTTTATTCAGCCTGAATCACTTTTAAATATTTTAACATGATTTTGTAGGTAAACTATAATTGTGTAAATTT GTTTTCCATTATAACTGCTACATTTTCAGGGTGAAATTAAACCAGGAACTGATATCCAATGCAGTTACCAAGAGATGCAT GTTAACATATCAGCTGATAGTTTCGACAAAGTCGATGCAGCAGTGTCCATCATTGAACTACTACTTAGCTCTATAACTGT AAGTTTTGTCACTTTATGCAACGCGACAAGCTTTTATGATTTATGATAGGGTCAAATACATAGTTGCACACTCTTTTTAT GTATTTTTACCATAATTTATTTTTTTTTCTTCTTATAATGATTGCTGTCTTCTATTCAGGGGAATTCAGCTGCTGTTTCC ACACCTGTATCTGTTTCTGGGGATAGCACTAATGTTCCGAGCCAAAGCCAAGATGCCCCCCCTTCTAATGCAGTTTCTCT GCCTTCGGAAAACCAGGCTGTGTTGCAGCCAGCAGCTGTTACACAAATGCATGGAGACCATTTTCAATACCCTGGTCCAT GGTTTTCAGTAGCTCCATCTCATACCCCTTTAGGTGCTGCTTCTGGCAGTTCAGTCCCTCCATATCCACCAGGTAGAACA CCCCATTTTCCATCACAAACAATGACTCCTTCAAATATGGTTTCTACTTTTGGTGCTCAACCTGTACCGGTTCCTGGATT CCCTGGATTCCGCCCTATGTTTCCAAATCATCATGTTTCTATGCAAGCACTACCACCTAGACCGATGTTACAGCATTCAC ATATGAATCAAGCAAGTCCTTTGGGTCACATTGTGCCGCCAAGAAATCCTTCTTCAGTACCTGTACAGAATTTTTCAGCT CCAACAAATGCCTCTGTTTCATTTCAAGTTACTTTAAGCCAACCAACACCAATAGGACACCTCCAGACACCAGTGTCTTC AATGCCTCAACCTATGTCTGGTATATCACCATCACCAATGCCTAACCAGCCATTGACCCCTCTTGGGGTATCTCCTAGAC AGAGTGGAGGTCCTGTAAGTCTCAGCAATTTGGGACCGATGGCTCCACCGGCAGTTCCTCCTACAAGACCTGTTTCTCTA GGTCAATCTGCCACTTTTTCTCAACATCAATCAGGAATTTCCCCAGGACCGCCATCATCTTTAGGATCAATGGCTCCTGC ACCTACTTACTCATCAAGACCTGTTTCGTTTCCATCGCCACGAATGTCGCCTTCAAATCCATTACCGCAGCAATCCGGAA CACCTAATTCTTTTTCTGGGGTCACTCCTTATCAAGCCCATGCAACACCACTAGTCTTGACGACTTCAAATTCAGGAAAT TTTACTTTTCAATCACAGAGGCCAAATGCAGACTATAGTCAAGTGGCTTCCAGACCAAACAGTCAAGCTACTGCTGAAGG TGGCATACAAGAGCCATCTTCTGGTCCACGTCCACCACCATTTGGGTTTTCTGTGCCTGATCAGCGTCTTCAAATGTTCC CCCGGACACAATCCCCCAGCCAGGTGGATCAAACTCAAGCTCATTTGTTTAATCTTCCCTTTGGGGGAAGATCAGGTTCT GTCTCAATTCCACCCCGACACACCACATTTCCCTATGCTGGTCAACCTGGACCTAGATCCCCAGCCCCCCAAATGGGTAT GCAGAACTTCATTTCTGCCCCTCAAAGACCAAACTTTCCCACTCCTGGTGTCCAAGGTGGCATGCACATTCGACAAAACT ATCCTCAGAGGGCATGGCCAGATATCCCAATGCCTTTGAATCAGAAGTTTGGAAACAATCACCCCATGGCTTCTGGTAAG CCTGCTTATCTTGCAGACCAAATTTATGATCCCTTCTCACCCACATCTGTTGCACCTCCACAACAGAAAGGTAATAATGG AAAATGAGGGAATTGGATATGGCTACATAGACGTAGTCCTGACAAAGTGAAAATGGCTGCAGTTTTTGGCCTGCAGACCA GATACTAATTTCATATAGATTAATGATGGGCATGTTGTAATTTCATGCTACTACTAACCAGAAGTTTTGGTTGGCTTCCT GAGATGATTGGTTGTTTCACTTGTTTTATTGATCTTTCTTTTTCTGAAATGCCCATCACTGATGCAGTGTTGCTTGATTA TGAATTACATTTTATGAATCCTTTGCCCATATAAATTTTCCATTTACCTTTATTGTAAGAGCGATGTATTTATGTACTAT GTCTTCAGTGGAATGTGAGTATTGAAAATTTGCTTGGGCGGTGATTGTTTCACCAAGGTGTCATGTAAACCCTTTTTTTG TTCAAGAGTGTCATATAAACCTTTGGTTAACAAATTGACTTATCTTTTTACCAACAATATAATAATTAAAAAAATAACTG CAAATCTTGTTTAGTTAGCTGCCCTGTGTTTGGGAATGGAAACAGGCGACAAGTCTCCATTTGGTTATACATTTTCAACT TGCATGCTTCCATCACATAAGATGTTGGTGCTGGTCTTGGTCTTGTAGCAAGGAACCACGAGAGTGAAGTCTTGACATCA GCTTGTAAGGTTGTTCCAGATATTTCAGATTCCACTTTAGTTGAGGCTCTTTGTTTTCAATGGACTTTGGAATTGGCTTC TTACTTATACCTCCGAATCCGAAGTGTCATCTTTGAGACCGATTGCCTCATTCTTAAACCTCTGGTCATCCGGTACTGAT AGTCTCTCTTATTTGTCTTCCAAGATTCAAGACTCTAGGCTTATGGCGCTCTCTTTCATTTTCTGCCCATTATCTCTTGT TAAGAGAAGCTCCAATTGCGTTGCCGATTTCTTAGCCAAGCTGGCTTTTAGCTTCCTCAATAGAGTTTAGATTGAGGACT TTCATTTTAGTATGTTGCCTAATTTGAGTTCTAATGTAGCTACTGTTATCTCTTCTAAATGAAAGCAGTATTGAAT 

CDS sequence (LotjaGi6g1v0037900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTGTTCCGTTTTATTGTTCACTTTCGGTCATTGTGTATCCACTATCCACTCTTAAATAGACTACTGATATTTATTTA TGGATCTAAGAAGTCAGAAATGCTCGAACTTGAAAAACGGGAAGCAATAGGTGAAATACTAAAATTAGATCCAAGTTACA AGACTCCACCTGGTTTTAAACCATTGTTAAAAGAAGCCAGCATTCCTTTACCTGTCCAAGAACATCCTGGGCACAAATTT ATTGGTCTAATATATGGACCTGAAGGTGATACTCAAAAGCGACTAGAAAAGGAAACTGGTGCGAAGATAAAAATTCATGG AACCAGAGCAGATACAGGAGACAAAGGTGAAATTAAACCAGGAACTGATATCCAATGCAGTTACCAAGAGATGCATGTTA ACATATCAGCTGATAGTTTCGACAAAGTCGATGCAGCAGTGTCCATCATTGAACTACTACTTAGCTCTATAACTGGGAAT TCAGCTGCTGTTTCCACACCTGTATCTGTTTCTGGGGATAGCACTAATGTTCCGAGCCAAAGCCAAGATGCCCCCCCTTC TAATGCAGTTTCTCTGCCTTCGGAAAACCAGGCTGTGTTGCAGCCAGCAGCTGTTACACAAATGCATGGAGACCATTTTC AATACCCTGGTCCATGGTTTTCAGTAGCTCCATCTCATACCCCTTTAGGTGCTGCTTCTGGCAGTTCAGTCCCTCCATAT CCACCAGGTAGAACACCCCATTTTCCATCACAAACAATGACTCCTTCAAATATGGTTTCTACTTTTGGTGCTCAACCTGT ACCGGTTCCTGGATTCCCTGGATTCCGCCCTATGTTTCCAAATCATCATGTTTCTATGCAAGCACTACCACCTAGACCGA TGTTACAGCATTCACATATGAATCAAGCAAGTCCTTTGGGTCACATTGTGCCGCCAAGAAATCCTTCTTCAGTACCTGTA CAGAATTTTTCAGCTCCAACAAATGCCTCTGTTTCATTTCAAGTTACTTTAAGCCAACCAACACCAATAGGACACCTCCA GACACCAGTGTCTTCAATGCCTCAACCTATGTCTGGTATATCACCATCACCAATGCCTAACCAGCCATTGACCCCTCTTG GGGTATCTCCTAGACAGAGTGGAGGTCCTGTAAGTCTCAGCAATTTGGGACCGATGGCTCCACCGGCAGTTCCTCCTACA AGACCTGTTTCTCTAGGTCAATCTGCCACTTTTTCTCAACATCAATCAGGAATTTCCCCAGGACCGCCATCATCTTTAGG ATCAATGGCTCCTGCACCTACTTACTCATCAAGACCTGTTTCGTTTCCATCGCCACGAATGTCGCCTTCAAATCCATTAC CGCAGCAATCCGGAACACCTAATTCTTTTTCTGGGGTCACTCCTTATCAAGCCCATGCAACACCACTAGTCTTGACGACT TCAAATTCAGGAAATTTTACTTTTCAATCACAGAGGCCAAATGCAGACTATAGTCAAGTGGCTTCCAGACCAAACAGTCA AGCTACTGCTGAAGGTGGCATACAAGAGCCATCTTCTGGTCCACGTCCACCACCATTTGGGTTTTCTGTGCCTGATCAGC GTCTTCAAATGTTCCCCCGGACACAATCCCCCAGCCAGGTGGATCAAACTCAAGCTCATTTGTTTAATCTTCCCTTTGGG GGAAGATCAGGTTCTGTCTCAATTCCACCCCGACACACCACATTTCCCTATGCTGGTCAACCTGGACCTAGATCCCCAGC CCCCCAAATGGGTATGCAGAACTTCATTTCTGCCCCTCAAAGACCAAACTTTCCCACTCCTGGTGTCCAAGGTGGCATGC ACATTCGACAAAACTATCCTCAGAGGGCATGGCCAGATATCCCAATGCCTTTGAATCAGAAGTTTGGAAACAATCACCCC ATGGCTTCTGGTAAGCCTGCTTATCTTGCAGACCAAATTTATGATCCCTTCTCACCCACATCTGTTGCACCTCCACAACA GAAAGGTAATAATGGAAAATGA 

Protein sequence (LotjaGi6g1v0037900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLFRFIVHFRSLCIHYPLLNRLLIFIYGSKKSEMLELEKREAIGEILKLDPSYKTPPGFKPLLKEASIPLPVQEHPGHKF IGLIYGPEGDTQKRLEKETGAKIKIHGTRADTGDKGEIKPGTDIQCSYQEMHVNISADSFDKVDAAVSIIELLLSSITGN SAAVSTPVSVSGDSTNVPSQSQDAPPSNAVSLPSENQAVLQPAAVTQMHGDHFQYPGPWFSVAPSHTPLGAASGSSVPPY PPGRTPHFPSQTMTPSNMVSTFGAQPVPVPGFPGFRPMFPNHHVSMQALPPRPMLQHSHMNQASPLGHIVPPRNPSSVPV QNFSAPTNASVSFQVTLSQPTPIGHLQTPVSSMPQPMSGISPSPMPNQPLTPLGVSPRQSGGPVSLSNLGPMAPPAVPPT RPVSLGQSATFSQHQSGISPGPPSSLGSMAPAPTYSSRPVSFPSPRMSPSNPLPQQSGTPNSFSGVTPYQAHATPLVLTT SNSGNFTFQSQRPNADYSQVASRPNSQATAEGGIQEPSSGPRPPPFGFSVPDQRLQMFPRTQSPSQVDQTQAHLFNLPFG GRSGSVSIPPRHTTFPYAGQPGPRSPAPQMGMQNFISAPQRPNFPTPGVQGGMHIRQNYPQRAWPDIPMPLNQKFGNNHP MASGKPAYLADQIYDPFSPTSVAPPQQKGNNGK 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 29 667 639 4.7E-133
PANTHER 29 667 639 4.7E-133
Gene3D 59 171 113 1.2E-20
SMART 62 155 94 3.0E-5
SUPERFAMILY 66 159 94 1.23E-15
Pfam 78 150 73 5.4E-6
ProSiteProfiles 79 150 72 8.345
MobiDBLite 163 192 30 -
MobiDBLite 342 358 17 -
MobiDBLite 342 468 127 -
MobiDBLite 372 386 15 -
MobiDBLite 403 444 42 -
MobiDBLite 451 468 18 -
MobiDBLite 484 532 49 -
MobiDBLite 484 514 31 -
MobiDBLite 653 673 21 -
MobiDBLite 659 673 15 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0037900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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