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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0042200 |
Transcript ID | LotjaGi6g1v0042200.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Trafficking protein particle complex subunit 4; TAIR: AT5G02280.1 SNARE-like superfamily protein; Swiss-Prot: sp|Q2TBL9|TPPC4_BOVIN Trafficking protein particle complex subunit 4; TrEMBL-Plants: tr|I1LLI8|I1LLI8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0042200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:8108147..8109584) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTTGCAGTGAAGTTATTCTTTTAACATGGAATCTATTATGTTAATTCTTTTCACATTCAGGATTATGGGTCTTCTGG AAGAATGGATACCAATGACACCTTGAGGGTGGCCAGTTTGTGGCACTCGATGCATGCTATCTCTCAGCAGTTATCGCCTG TTTCAGGTTGCTTTGGAATTGAACTTCTCCAAGCGGACACGTTTGATCTTCATTGCTTTCAATCACTGACAGGTAATTTT TAATTAACTCATTGTTATTTTAACTTTCTATTGTACTTGGTGAATAAAATGAAGAGGAATGTTTAATATCCTTTACATTC TACATATAGTTAATTGGAATATCTAGTACTAGCTTTTAGTTTCCATGCACATCTGAGGCCTTGCAGGTAGCTGTAATATT GCCAGGTTTAGTTAAAGAAGGTTTAAGTAATTTTGTATATCAGAAGCTCTAGATTTTTTTTGATAAGCATTAGAAGCTCT AGGTAATTATTGATAATAGAAGTATTGCTTATTTAAGGTGCTTGTTCAAAACATTAACTTGACACTTTGGAATTTCACTT ATAGAATCATTAGGCCATCTTATTAGTTATATATTTCAATAGGCTAAATGGCTAAAACCTCACAAGTGTGTGAAGCCCAG CCAATATTCTAACAAAGTTGTATAGATCACAAATTTAGAAATAGTTGTTTTCAAGGATGCCTGATCATGACTTTGAATTT AGAGTTAGAGATCAGAATCATTAATTGGAATGCAGACTGGGGTTTGCCAAGTATCCTGCCATCATTATTTGTCAAATATG GCGGGTTTTTGGCTCTCCACCATATTCCGCCATCCGCCATTAACAACACTGGATTGTTATTATTATTACTACTACATATT GTTGGTTACTCTGCAGTAGTAATTTTTTATACACAGTATTATTTCCAGATAATAAGCATGTTTCAGTGATCACTTTTGGT CTTTATACACCATACCAAATTTTCCATGCCTCTAGGTCACATGCATCTTCTGATTTGGATAAATGAACTCTTGAGAGTTG AAAATTCTCTAGATGCTTAGCTGCTATTTGTGTTTCCTTGCATTGATATTGCAGTTTAACTAGTCATTGTAATGGGCCTA TCTTTTCATTGTTGAGCTGATCCATATCCAGTTTAATGCCTCCGACCCTCTTTTTCATTTTGCTTCTTCTTCTTTTGTAA TGTTGTTGATATTATGGAAATGATATTCTCCTCCCATACAGGGACTAAGTTCTTTGTGGTCTCTGAGCCTGGAGCACAAT ACATGGAAAGTTTATTGAAATTTATCTATGAATTGTACACGGACTATGTCTTGAAGAATCCTTTCTATGAGATGGAGATG CCTATACGTTGTGAGCTATTTGATATTAACCTGACACAGGCAGTGCAAAAGGATCGTGTTGCGTTATTGGGACGATAA
CDS sequence (LotjaGi6g1v0042200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATACCAATGACACCTTGAGGGTGGCCAGTTTGTGGCACTCGATGCATGCTATCTCTCAGCAGTTATCGCCTGTTTC AGGTTGCTTTGGAATTGAACTTCTCCAAGCGGACACGTTTGATCTTCATTGCTTTCAATCACTGACAGGGACTAAGTTCT TTGTGGTCTCTGAGCCTGGAGCACAATACATGGAAAGTTTATTGAAATTTATCTATGAATTGTACACGGACTATGTCTTG AAGAATCCTTTCTATGAGATGGAGATGCCTATACGTTGTGAGCTATTTGATATTAACCTGACACAGGCAGTGCAAAAGGA TCGTGTTGCGTTATTGGGACGATAA
Protein sequence (LotjaGi6g1v0042200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDTNDTLRVASLWHSMHAISQQLSPVSGCFGIELLQADTFDLHCFQSLTGTKFFVVSEPGAQYMESLLKFIYELYTDYVL KNPFYEMEMPIRCELFDINLTQAVQKDRVALLGR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
CDD | 1 | 103 | 103 | 1.64983E-67 | – | |
Gene3D | 1 | 111 | 111 | 3.5E-41 | – | |
PANTHER | 1 | 114 | 114 | 1.5E-76 | – | |
SMART | 1 | 107 | 107 | 2.9E-42 | ||
PANTHER | 1 | 114 | 114 | 1.5E-76 | ||
Pfam | 1 | 106 | 106 | 5.4E-43 | ||
SUPERFAMILY | 2 | 106 | 105 | 1.92E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. | ||
Cellular component | TRAPP complex | A large complex that acts as a tethering factor involved in transporting vesicles from the ER through the Golgi to the plasma membrane. A TRAPP (transport protein particle) complex has a core set of proteins which are joined by specific subunits depending on the cellular component where a given TRAPP complex is active. |
Expression pattern of LotjaGi6g1v0042200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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