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LotjaGi6g1v0043700.3

Overview

Field Value
Gene ID LotjaGi6g1v0043700
Transcript ID LotjaGi6g1v0043700.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Ferrochelatase; TAIR: AT5G26030.1 ferrochelatase 1; Swiss-Prot: sp|P42044|HEMH_CUCSA Ferrochelatase-2, chloroplastic; TrEMBL-Plants: tr|A0A0B2RCX6|A0A0B2RCX6_GLYSO Ferrochelatase; Found in the gene: LotjaGi6g1v0043700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:8278447..8280867) extracted from Lotus japonicus Gifu genome v1.2.

CTGACTAAATTGCTTGATCACATCCTTTCCTTTGCTCACAGGTCATGTACTGATATCCGAAACATTACATTTGTCACTTG CCACTCTGATTCTAACAAGTCTACATCTCAAGCATCCTTGTTTTTGTGTCCTGGCTCGACGAATAGGAGAAATGGCATGC TTGCAGGACCTTTTTCTGGGAACCTCTCTGGCAGGAAAAATCTTGTTTGTCAGACAAATTATTCTGTGAATACAAGCACT TTTGATGGGACTGCTTTAGAATCTCCCTCCCGTGTTGTGGAAGAGAAAGTTGGGGTCTTGCTTCTCAACCTAGGAGGGCC GGAGACGCTCCATGATGTTCAACCTTTTCTATTTAATCTTTTTGCAGATCCTGTATGTCTGATTGTTTTTCTACTTCCTG AGCCAATTTACTCGAGTGTTTTTCCCCTCATATATGCCTAAATTCCATATTAGCATACACATTCATTAGTTTTGTATGCT TATATGTTTTTGTCTTGAAACAGGATATCATTCGTCTCCCGAGGTTGTTTCGGTTTCTCCAGCGACCACTGGCAAAATTG ATTTCTACACTTCGGGCTCCTAAATCCAAGGAAGCGTATGCTTCTATTGGAGGTGGCTCTCCTTTACGCAAAATTACCAA TGACCAGGTGGATTTCAAATGCTCTTTAGCACTTTTCTTGTTTTGGTTTTACCATCATTTTATGCTGTGTGCCGTTCCTT TTTCTGTGCGAGTGGAATGCTTTTTTGGCTTCTTCCTTTTATTTTCAATAAAAACTCTGTGAATTTATGGTTTGGAATGG AACTAACACAGCTTTCATGATTTCTGGATTCTGGGCATGTACAGGCACTGGCAATTAAAAAGGCTTTGGAAGCAAAGGGT CTCTCTTCAAGTGTCTATGTTGGGATGAGGTACTGGTACCCATTCACAGAAGATGCAGTTCAGCAAGTAAGTCCTCACAT GTCTCCATTCTACATGATTCTCATCATACATCCATTTTTTTTCTTTTGATTATTAAATGACGTACTGGTTACAAATCATG AATTAGATTATTTATTCTGAGCTCTATTTTATCACCTTAGTTTGGAATCTAAAACTAATAGCTCCTCTTGGGTGTAGATT AAGAGGGATGGAATAACAAGGCTTGTGGTATTACCCCTTTATCCCCAATTTTCTATATCTACAACTGGGTCAAGCATCCG TGTCCTCCAGCATATGTTCAGGTACTCTTTCTTGGCACTTTGTGCATACTCTTAAATAAATGATTGAAAGATTATTACTA ATATTTGATGTTATTTACGTGTCAGGGAAGATGCTTATTTGTCCCAGCTTCCTATTTCTATTATAAACTCTTGGTATCAA CGAGAAGGTTACGTTAAGTCAATGGCTGACTTAATTGAGAAAGAGCTCCAGACTTTTTCTGAGCCAAAGGAGGTAGTTTC ATTATTGCATTGAACGCTTTCAACATGGTTCTTTTGATGCAATAAAATTAATAAAAATTCCCTATGGAGCCTGCCTTCTA AGGATTGAAGGCTATATGATGTATTTTACTGCAATCTGAACCATGGCATTTTCCCCCATATATCAGGCAATGATATTTTT CAGTGCACATGGTGTGCCCGTCAGTTATGTTGAGAATGCTGGGGATCCGTACCAAGTTCAAATGGAGGAGTGCATCTTCT TGATCATGCAGGAGTTAAAAGCTAGAGGAATTAGTAATGAGCACACTCTTGCCTATCAGGTTTGTCTTGAAGTCTTTTAA CTTGCTTTTCTTGCATCTTGAGTTGAATGGAGACTTAATGTTTACTTAATGGCTTGAGTTATTGCTTTCCGTGGTTTACT GTGTATTTTTCCTATCTTACACTTATGTTGGATGAATTTCCAGAGTCGAGTCGGTCCTGTACAGTGGCTGAAACCATATA CAGATGAAGTTCTCGTTGAGCTTGGCAAGAAAGGTGTGAAGAGTCTTTTAGCTGTTCCAGTGAGGTACATTATTATGGGC CTTTTGCACTTGTTGATTTGAGCTCTACGCGATAGTATATGGATTTTATAATACTTTACCGTACCAGAACCTTAGTAACA GTCATCCGTTCTTCTTATATTCCAGCTTTGTGAGTGAGCATATTGAGACCCTTGAAGAAATTGACATGGAGTACAAGGAG TTGGCTCTTGAATCTGGTGTCAAGAATTGGGCACGTGTCCCTGCCCTCGGCCTTACCCCTTCCTTCATTACTGATCTGGC TGATGCAGTAATAGAAGCTCTCCCATCAGCAACAGCAATGTATGCACCGAGCAGCACCAATGAAGATGTTGAACAAGACC CAGTTAGATTTTTTGTCAAGATGTTCTTTGGTTCAATCTTTGCTTTCTTCTTGCTTTTGTCACCCAAAATGATAAATGCC TTCAAGAATCATGTCATTTAG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0043700.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTTGCAGGACCTTTTTCTGGGAACCTCTCTGGCAGGAAAAATCTTGTTTGTCAGACAAATTATTCTGTGAATACAAG CACTTTTGATGGGACTGCTTTAGAATCTCCCTCCCGTGTTGTGGAAGAGAAAGTTGGGGTCTTGCTTCTCAACCTAGGAG GGCCGGAGACGCTCCATGATGTTCAACCTTTTCTATTTAATCTTTTTGCAGATCCTGATATCATTCGTCTCCCGAGGTTG TTTCGGTTTCTCCAGCGACCACTGGCAAAATTGATTTCTACACTTCGGGCTCCTAAATCCAAGGAAGCGTATGCTTCTAT TGGAGGTGGCTCTCCTTTACGCAAAATTACCAATGACCAGGCACTGGCAATTAAAAAGGCTTTGGAAGCAAAGGGTCTCT CTTCAAGTGTCTATGTTGGGATGAGGTACTGGTACCCATTCACAGAAGATGCAGTTCAGCAAATTAAGAGGGATGGAATA ACAAGGCTTGTGGTATTACCCCTTTATCCCCAATTTTCTATATCTACAACTGGGTCAAGCATCCGTGTCCTCCAGCATAT GTTCAGGGAAGATGCTTATTTGTCCCAGCTTCCTATTTCTATTATAAACTCTTGGTATCAACGAGAAGGTTACGTTAAGT CAATGGCTGACTTAATTGAGAAAGAGCTCCAGACTTTTTCTGAGCCAAAGGAGGCAATGATATTTTTCAGTGCACATGGT GTGCCCGTCAGTTATGTTGAGAATGCTGGGGATCCGTACCAAGTTCAAATGGAGGAGTGCATCTTCTTGATCATGCAGGA GTTAAAAGCTAGAGGAATTAGTAATGAGCACACTCTTGCCTATCAGAGTCGAGTCGGTCCTGTACAGTGGCTGAAACCAT ATACAGATGAAGTTCTCGTTGAGCTTGGCAAGAAAGGTGTGAAGAGTCTTTTAGCTGTTCCAGTGAGCTTTGTGAGTGAG CATATTGAGACCCTTGAAGAAATTGACATGGAGTACAAGGAGTTGGCTCTTGAATCTGGTGTCAAGAATTGGGCACGTGT CCCTGCCCTCGGCCTTACCCCTTCCTTCATTACTGATCTGGCTGATGCAGTAATAGAAGCTCTCCCATCAGCAACAGCAA TGTATGCACCGAGCAGCACCAATGAAGATGTTGAACAAGACCCAGTTAGATTTTTTGTCAAGATGTTCTTTGGTTCAATC TTTGCTTTCTTCTTGCTTTTGTCACCCAAAATGATAAATGCCTTCAAGAATCATGTCATTTAG
Download CDS Sequence

Protein sequence (LotjaGi6g1v0043700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLAGPFSGNLSGRKNLVCQTNYSVNTSTFDGTALESPSRVVEEKVGVLLLNLGGPETLHDVQPFLFNLFADPDIIRLPRL FRFLQRPLAKLISTLRAPKSKEAYASIGGGSPLRKITNDQALAIKKALEAKGLSSSVYVGMRYWYPFTEDAVQQIKRDGI TRLVVLPLYPQFSISTTGSSIRVLQHMFREDAYLSQLPISIINSWYQREGYVKSMADLIEKELQTFSEPKEAMIFFSAHG VPVSYVENAGDPYQVQMEECIFLIMQELKARGISNEHTLAYQSRVGPVQWLKPYTDEVLVELGKKGVKSLLAVPVSFVSE HIETLEEIDMEYKELALESGVKNWARVPALGLTPSFITDLADAVIEALPSATAMYAPSSTNEDVEQDPVRFFVKMFFGSI FAFFLLLSPKMINAFKNHVI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 388 388 - –
PANTHER
PTHR11108
11 419 409 6.7E-241
IPR001015
PANTHER
PTHR11108:SF4
11 419 409 6.7E-241 –
TIGRFAM
TIGR00109
42 367 326 2.5E-114
IPR001015
Hamap
MF_00323
43 368 326 37.291
IPR001015
SUPERFAMILY
SSF53800
43 375 333 2.13E-107 –
Pfam
PF00762
44 367 324 3.0E-111
IPR001015
Gene3D
G3DSA:3.40.50.1400
44 368 325 3.9E-122 –
CDD
cd03411
45 207 163 5.45712E-69
IPR033659
Gene3D
G3DSA:3.40.50.1400
206 349 144 3.9E-122 –
CDD
cd00419
215 351 137 9.80378E-59
IPR033644
ProSitePatterns
PS00534
234 253 20 -
IPR019772
Phobius
TRANSMEMBRANE
389 407 19 - –
Phobius
CYTOPLASMIC_DOMAIN
408 420 13 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004325
Molecular function Ferrochelatase activity Catalysis of the reaction: protoheme = Fe(2+) + protoporphyrin IX.
Subterm of
GO:0006783
Biological process Heme biosynthetic process The chemical reactions and pathways resulting in the formation of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, from less complex precursors.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0043700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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