Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0045700 |
| Transcript ID | LotjaGi6g1v0045700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | KH domain-containing protein family; TAIR: AT2G38610.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9ZVI3|QKIL3_ARATH KH domain-containing protein At2g38610; TrEMBL-Plants: tr|I3T4M5|I3T4M5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0045700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:8511629..8516003) extracted from Lotus japonicus Gifu genome v1.2.
CACTTATAGATATTTTTACCGATCACACACCAACACAATCTTCACATCGGCAGCGAGAATCAAACATACAACTTTTTGAG GGAAAGTGATTCATTCTTACGAATTAAGCCAACACGAATATTTACCATCTTAACTACCCCTCTATCTTTGAATATCTATT CTTTTATTATCTATCTCTCTTCAATCATCTTAAATCCTTACTAATGCTTATTCCATTATAGTCCTTGATTTTTACTCTGT TTAAACAAAAAAATTCACCTGTTTGGGAAAATATACATACATGATAAAACCTTGCATATGCAACAAAAACTCAATGAAAA CTCACCTAGAGAAGTACAGAGGGACACCCTTTATGGCTTGCTTTTACTACTGAGCTACTACACAAGTGGCCCTCCTTCGT AATTGTAGTTTTGTACCTTTCATTCATCAACTCTATTATTTTTTCCCTCTTTTCTTTCAAGCACAGGTTAGATGATTCTG TTTTTCTAGGAGGATTTTTGAACCACATCCAATCTAAACCAACTCTCTCATCTTCCTTATTCCCTTTGAATTTTCTCCAA TCTTCAAGGCAATCAATACCCTTGTAGAATTGATGTCTAATATGTACAATCAGATTTCCTCACCTTCATCCCAAAGGGCT AATTCTCCAAATATAAACATGAGAAGCAATTTTGATGTTGATAGGTAAGTAGGGGATACCTCTTTGGTAATTTGTTTAGA GAGATTTGATTTTTCAGATGCATACATGTATTGTCATCAATTAATTTCTGGGCATGTGTTCTTATTTGTGTTTGTTCTAG TCAATACTTAGCGGAGCTGCTAGCTGAACACCAGAAACTCAGACCTTTCATGCAAGTCCTGCCCTTGTGTAGCAGACTTC TCAATCAAGGTCTGTTTATTCCATTTCTATGATTTCAAGGTTTCTGTTGTGAAATTTTTGCTCTTACTATTATTCCACTC GTTTCAAATGATCTCGTCTCTAATTTAATTTGAATTATGCGTAGCTAGAAGATAAACTCAGTTTTCTTGTTACTTTGATT ATTTTGTCATTACTCTTTCTCCTAAGGGCTGTAGTCTTCTTTAAAATACACTGGATTGTCAATTTCTGAGATTCGCGCTG GCCTGAACCTATTCATGTTTGATTCAACCGTAGTTCCTAATATATTTTGAAATGCAATGCAAGTGATAGAATTAGTCTTC TATATTAGGTGACAAAGCAAACTTCTCTATTGTTCTCTACAATTCTTAGCTGTTGTCCAAGTCAATGAAAAGGAAAACAC TGGTAAGTTTTGGATGACCACAAAATGTAGCATTTAAAATCGATGAGGTACTAAAAGATGGTGCAATACTGATTTGTTGA GAAGTTGCATATTGACTAGAGATAGGGCTAAGTATGTCTTTATAGAGGGTAGCGCAATTCTCATCCCTGAGCTAGCTTTT GAGGTAGAGTCAGGCCTAACCTGAATTCTAACTTCTAAGATGATATCATAGTCTATTGTTTCACTAGAGGAAACGTTCAG ATGATCAACTTTAATATGGACTCTTTCTATAACATACAGTTTTCATTGTCACGATGTTCTTATAGACAGTATCTGCCTCA CTCTATGTCAAAACTTGAAAATATGTGTCTTCTACTACACTGCCTGTTCATAGTTTACAATTTCTGTCAAGGTCGCGTTA ATATCATCTATGTTGCTTGATTCAGTAGTCTTTATACAAGATCTTACTCTCTCATTTACCTTATTATCAGAGATTTTAAG GGCTTCTGGGAAGAATGGAATGTTGCAGAACCAAGGGTTTAGTGACTTTGATAGATTGCAAGTCTTAAGCCCCGGTCATA TGACTTCTTCAGAGTTAACGCCAAACTTCTCAGGATGGAACAGCCTGTCTCATGAAGTAAGTGTCTGAGGTTTTGTTCTA ATCGATTTGAAATTTTCTACTACTCCACTATCACCAGTTTCTACTTTCTTTTGAACACTCCAAATAAAATCTTCCATTCA TTTCTGTATTGTAGAAAACCTGATTTGGCCAATGTAGTTCTACCTTGCTTTTCTTTGTTTCTCCTTTGATCAGTTTTGGT AAGCTCTAGTTTCTTTCACTGATTGGTTAAGCTCATCATACAGCAGAGGTTGGCTGGAGCACAGGGACTAAACATGGATT GGCAAGCACCACCAGCTGTTCCAAGTTCTCACATAGTGAAGAAGATATTGCGCTTGGATATTCCTATGGAAAGCTACTCA AATGTAATGTCTATAACTCTTTTTTCATTTTATCATGAGCAATAAACTGTGCATTTTCCTACCATGTTTTGATAGTTCTA CATTCTATTGATCTTTAAGATGCTGAGGCTATTTTAATTTTCAGCTTAATTTTGTTGGGCGGCTTCTTGGTCCTAGGGGT AATTCACTGAAGCGAGTTGAAGCTACCACGGGTTGCCGTGTATATATCAGAGGGAAAGGTTCAATTAAGGACCTAGACAA GGTGCTGCATTATCATGTTTCTCCAGAGCCTAATTTTAACTACCTGGGATTTATAGTTACTCATTTAGTGTCTCAAATTT TCATACTTTCTCCTATCAAATTGTTGGCAATGTTTCTCAACATATGTTGTTTGTAACTTTTTAACTTTTCTCTTCCTTTT TGACTCCATAGGAAGACTTGTTAAGGGGAAGGCCGGGCTATGAGCACCTGAGTGAACCGCTTCACATTTTGATTGAAGCT GAACTACCTGCCAATATTGTTGATGTAAGGTTGAGGCAAGCACAGGAAATCATCGAAGAGATACTTAAGCCCGTGGTATC TCATCCTAATTCCTAACTCTGATGCTCAATAATCATTGTTAACATCTGCACTCATATGTATCAGTAATTCGAGTGTGATG TCTGGAGTCCGACATTAATTAAGAATGAGTGAGGTGAAAGTAGTATAAAATATATGATCTATAAACTCAACACCTTAAGG TTTTGGGTGAAGATTCAGTGTCCGTTTTTCTTAGTGGTCTTTTTTATGGTCCATTGGTGCAGGCAATCCTGCGTCTTCAC GTATATAATGGGCCTTGTTTTGAGCCAAATTTTCTAGGAATAGGAGGTTCTTGTGTTGTTATAACTTATAATAGTACTGT TTCTGATTCTCCTCTTTTTTCATATGCAGGATGAATCACAGGACTTTTACAAGAGACAGCAACTAAGAGAGCGTGCAATG CTCAATTCCAATTTTAGAGAAGAGAGCCCTCAACTTAGCGGTAGTGTCTCTCCATTCACTTCTAATGAAATAAAACGGGC AAAAACGGATCAATAATGGTTATATGTTGAGATTGTTGCACACTTGCACTTGATGTTCCTTCCTACTAATGAATTCTGTA AGGCTGCAAAGAGAAAATCTTGCTGATTTGGAGAACAAACTAAGGGGAGAAACACATTCACTGCCAGTCTATTGCAATAG TGGAGTTGCAAAACTGGCAGAATTCTTTTTGAACTATGATTTGACCTGTTCATATATCTATCTGTGATGTGTATAATTAT GGTATTGCTGGGATTTTATAAACTGTTTATTGATAGTATGAGAAAGATTTGTTTCATATCACATGTACTTTACTGAGCAT AGTATAACAGCAATTTCTTCTCAATATACCACTTCTTTATACAAAGTTTGGCCATGGATAGGAGCACAAACAGTTAGTTG AACTTTTTAGCAGATCCCTTTTTTAGCAGAAAGCTCATATATTAGGTGCAACATCAAATGGTGGGGCCTTTGATCTATTT AATGCAGATGTGGATGTTGTTTACTGAAGCTTTATGAGACAAGGTGACCTGATTTTGCTTGGTCTAATCAATAGTTCTCT AACCCTTTACTGATCATAAAGACAAGCCTTTTCTTTGTGGGGATAAAGATGAGCTAAAAGTATGTTTTATGACTTGCTAA ACTCAAGAATTAAGGTAAGCAGATCTATCATCATCATTGTACAATATTCTTTTGGTTGCGATTAACAATATATTCAGACA ATACATATGTCTACCAGCATTGGTGGCCTATATGGTACTTATTGGATCTCAACACCTCATGTCCTGGGTTCAAATGCTGG TATCAGAGACACTACATATGTCTAAATAAGCTGCTATACTTTATGTATTCAATTGTTATCACTACCAAGTAGAGACCTCA AGATGTTCCTGACCCGAATAACCCGGGATAAAGCATGGGTTCGGCTAATAAATATAGGCCCACAAAAAATTTGGTTCAGC CCATCTTAACTCGAAAATATGTCGACCCGATGTGGGCTGACCAGCTGGCCCATAAAATGGTAAAAATGACAATAAAATGC TTGTCACTTTTTTAATATTTTCATGTCTTTTTTGTTTTCATATATAGGAAATATA
CDS sequence (LotjaGi6g1v0045700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTAATATGTACAATCAGATTTCCTCACCTTCATCCCAAAGGGCTAATTCTCCAAATATAAACATGAGAAGCAATTT TGATGTTGATAGTCAATACTTAGCGGAGCTGCTAGCTGAACACCAGAAACTCAGACCTTTCATGCAAGTCCTGCCCTTGT GTAGCAGACTTCTCAATCAAGAGATTTTAAGGGCTTCTGGGAAGAATGGAATGTTGCAGAACCAAGGGTTTAGTGACTTT GATAGATTGCAAGTCTTAAGCCCCGGTCATATGACTTCTTCAGAGTTAACGCCAAACTTCTCAGGATGGAACAGCCTGTC TCATGAACAGAGGTTGGCTGGAGCACAGGGACTAAACATGGATTGGCAAGCACCACCAGCTGTTCCAAGTTCTCACATAG TGAAGAAGATATTGCGCTTGGATATTCCTATGGAAAGCTACTCAAATCTTAATTTTGTTGGGCGGCTTCTTGGTCCTAGG GGTAATTCACTGAAGCGAGTTGAAGCTACCACGGGTTGCCGTGTATATATCAGAGGGAAAGGTTCAATTAAGGACCTAGA CAAGGAAGACTTGTTAAGGGGAAGGCCGGGCTATGAGCACCTGAGTGAACCGCTTCACATTTTGATTGAAGCTGAACTAC CTGCCAATATTGTTGATGTAAGGTTGAGGCAAGCACAGGAAATCATCGAAGAGATACTTAAGCCCGTGGATGAATCACAG GACTTTTACAAGAGACAGCAACTAAGAGAGCGTGCAATGCTCAATTCCAATTTTAGAGAAGAGAGCCCTCAACTTAGCGG TAGTGTCTCTCCATTCACTTCTAATGAAATAAAACGGGCAAAAACGGATCAATAA
Protein sequence (LotjaGi6g1v0045700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNMYNQISSPSSQRANSPNINMRSNFDVDSQYLAELLAEHQKLRPFMQVLPLCSRLLNQEILRASGKNGMLQNQGFSDF DRLQVLSPGHMTSSELTPNFSGWNSLSHEQRLAGAQGLNMDWQAPPAVPSSHIVKKILRLDIPMESYSNLNFVGRLLGPR GNSLKRVEATTGCRVYIRGKGSIKDLDKEDLLRGRPGYEHLSEPLHILIEAELPANIVDVRLRQAQEIIEEILKPVDESQ DFYKRQQLRERAMLNSNFREESPQLSGSVSPFTSNEIKRAKTDQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 283 | 283 | 4.0E-168 | – | |
| PANTHER | 1 | 283 | 283 | 4.0E-168 | – | |
| MobiDBLite | 1 | 22 | 22 | - | – | |
| Pfam | 30 | 66 | 37 | 8.7E-10 | ||
| SMART | 134 | 234 | 101 | 1.6E-4 | ||
| CDD | 139 | 259 | 121 | 5.54755E-49 | – | |
| SUPERFAMILY | 140 | 259 | 120 | 2.61E-29 | ||
| Pfam | 151 | 183 | 33 | 5.0E-5 | ||
| MobiDBLite | 257 | 284 | 28 | - | – | |
| MobiDBLite | 257 | 277 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi6g1v0045700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…