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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0045700 |
| Transcript ID | LotjaGi6g1v0045700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | KH domain-containing protein family; TAIR: AT2G38610.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9ZVI3|QKIL3_ARATH KH domain-containing protein At2g38610; TrEMBL-Plants: tr|I3T4M5|I3T4M5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0045700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:8512258..8515671) extracted from Lotus japonicus Gifu genome v1.2.
AGTACAGAGGGACACCCTTTATGGCTTGCTTTTACTACTGAGCTACTACACAAGTGGCCCTCCTTCGTAATTGTAGTTTT GTACCTTTCATTCATCAACTCTATTATTTTTTCCCTCTTTTCTTTCAAGCACAGGTTAGATGATTCTGTTTTTCTAGGAG GATTTTTGAACCACATCCAATCTAAACCAACTCTCTCATCTTCCTTATTCCCTTTGAATTTTCTCCAATCTTCAAGGCAA TCAATACCCTTGTAGAATTGATGTCTAATATGTACAATCAGATTTCCTCACCTTCATCCCAAAGGGCTAATTCTCCAAAT ATAAACATGAGAAGCAATTTTGATGTTGATAGGTAAGTAGGGGATACCTCTTTGGTAATTTGTTTAGAGAGATTTGATTT TTCAGATGCATACATGTATTGTCATCAATTAATTTCTGGGCATGTGTTCTTATTTGTGTTTGTTCTAGTCAATACTTAGC GGAGCTGCTAGCTGAACACCAGAAACTCAGACCTTTCATGCAAGTCCTGCCCTTGTGTAGCAGACTTCTCAATCAAGGTC TGTTTATTCCATTTCTATGATTTCAAGGTTTCTGTTGTGAAATTTTTGCTCTTACTATTATTCCACTCGTTTCAAATGAT CTCGTCTCTAATTTAATTTGAATTATGCGTAGCTAGAAGATAAACTCAGTTTTCTTGTTACTTTGATTATTTTGTCATTA CTCTTTCTCCTAAGGGCTGTAGTCTTCTTTAAAATACACTGGATTGTCAATTTCTGAGATTCGCGCTGGCCTGAACCTAT TCATGTTTGATTCAACCGTAGTTCCTAATATATTTTGAAATGCAATGCAAGTGATAGAATTAGTCTTCTATATTAGGTGA CAAAGCAAACTTCTCTATTGTTCTCTACAATTCTTAGCTGTTGTCCAAGTCAATGAAAAGGAAAACACTGGTAAGTTTTG GATGACCACAAAATGTAGCATTTAAAATCGATGAGGTACTAAAAGATGGTGCAATACTGATTTGTTGAGAAGTTGCATAT TGACTAGAGATAGGGCTAAGTATGTCTTTATAGAGGGTAGCGCAATTCTCATCCCTGAGCTAGCTTTTGAGGTAGAGTCA GGCCTAACCTGAATTCTAACTTCTAAGATGATATCATAGTCTATTGTTTCACTAGAGGAAACGTTCAGATGATCAACTTT AATATGGACTCTTTCTATAACATACAGTTTTCATTGTCACGATGTTCTTATAGACAGTATCTGCCTCACTCTATGTCAAA ACTTGAAAATATGTGTCTTCTACTACACTGCCTGTTCATAGTTTACAATTTCTGTCAAGGTCGCGTTAATATCATCTATG TTGCTTGATTCAGTAGTCTTTATACAAGATCTTACTCTCTCATTTACCTTATTATCAGAGATTTTAAGGGCTTCTGGGAA GAATGGAATGTTGCAGAACCAAGGGTTTAGTGACTTTGATAGATTGCAAGTCTTAAGCCCCGGTCATATGACTTCTTCAG AGTTAACGCCAAACTTCTCAGGATGGAACAGCCTGTCTCATGAAGTAAGTGTCTGAGGTTTTGTTCTAATCGATTTGAAA TTTTCTACTACTCCACTATCACCAGTTTCTACTTTCTTTTGAACACTCCAAATAAAATCTTCCATTCATTTCTGTATTGT AGAAAACCTGATTTGGCCAATGTAGTTCTACCTTGCTTTTCTTTGTTTCTCCTTTGATCAGTTTTGGTAAGCTCTAGTTT CTTTCACTGATTGGTTAAGCTCATCATACAGCAGAGGTTGGCTGGAGCACAGGGACTAAACATGGATTGGCAAGCACCAC CAGCTGTTCCAAGTTCTCACATAGTGAAGAAGATATTGCGCTTGGATATTCCTATGGAAAGCTACTCAAATGTAATGTCT ATAACTCTTTTTTCATTTTATCATGAGCAATAAACTGTGCATTTTCCTACCATGTTTTGATAGTTCTACATTCTATTGAT CTTTAAGATGCTGAGGCTATTTTAATTTTCAGCTTAATTTTGTTGGGCGGCTTCTTGGTCCTAGGGGTAATTCACTGAAG CGAGTTGAAGCTACCACGGGTTGCCGTGTATATATCAGAGGGAAAGGTTCAATTAAGGACCTAGACAAGGTGCTGCATTA TCATGTTTCTCCAGAGCCTAATTTTAACTACCTGGGATTTATAGTTACTCATTTAGTGTCTCAAATTTTCATACTTTCTC CTATCAAATTGTTGGCAATGTTTCTCAACATATGTTGTTTGTAACTTTTTAACTTTTCTCTTCCTTTTTGACTCCATAGG AAGACTTGTTAAGGGGAAGGCCGGGCTATGAGCACCTGAGTGAACCGCTTCACATTTTGATTGAAGCTGAACTACCTGCC AATATTGTTGATGTAAGGTTGAGGCAAGCACAGGAAATCATCGAAGAGATACTTAAGCCCGTGGTATCTCATCCTAATTC CTAACTCTGATGCTCAATAATCATTGTTAACATCTGCACTCATATGTATCAGTAATTCGAGTGTGATGTCTGGAGTCCGA CATTAATTAAGAATGAGTGAGGTGAAAGTAGTATAAAATATATGATCTATAAACTCAACACCTTAAGGTTTTGGGTGAAG ATTCAGTGTCCGTTTTTCTTAGTGGTCTTTTTTATGGTCCATTGGTGCAGGCAATCCTGCGTCTTCACGTATATAATGGG CCTTGTTTTGAGCCAAATTTTCTAGGAATAGGAGGTTCTTGTGTTGTTATAACTTATAATAGTACTGTTTCTGATTCTCC TCTTTTTTCATATGCAGGATGAATCACAGGACTTTTACAAGAGACAGCAACTAAGAGAGCGTGCAATGCTCAATTCCAAT TTTAGAGAAGAGAGCCCTCAACTTAGCGGTAGTGTCTCTCCATTCACTTCTAATGAAATAAAACGGGCAAAAACGGATCA ATAATGGTTATATGTTGAGATTGTTGCACACTTGCACTTGATGTTCCTTCCTACTAATGAATTCTGTAAGGCTGCAAAGA GAAAATCTTGCTGATTTGGAGAACAAACTAAGGGGAGAAACACATTCACTGCCAGTCTATTGCAATAGTGGAGTTGCAAA ACTGGCAGAATTCTTTTTGAACTATGATTTGACCTGTTCATATATCTATCTGTGATGTGTATAATTATGGTATTGCTGGG ATTTTATAAACTGTTTATTGATAGTATGAGAAAGATTTGTTTCATATCACATGTACTTTACTGAGCATAGTATAACAGCA ATTTCTTCTCAATATACCACTTCTTTATACAAAGTTTGGCCATGGATAGGAGCACAAACAGTTAGTTGAACTTTTTAGCA GATCCCTTTTTTAGCAGAAAGCTCATATATTAGGTGCAACATCAAATGGTGGGG
CDS sequence (LotjaGi6g1v0045700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTAATATGTACAATCAGATTTCCTCACCTTCATCCCAAAGGGCTAATTCTCCAAATATAAACATGAGAAGCAATTT TGATGTTGATAGTCAATACTTAGCGGAGCTGCTAGCTGAACACCAGAAACTCAGACCTTTCATGCAAGTCCTGCCCTTGT GTAGCAGACTTCTCAATCAAGAGATTTTAAGGGCTTCTGGGAAGAATGGAATGTTGCAGAACCAAGGGTTTAGTGACTTT GATAGATTGCAAGTCTTAAGCCCCGGTCATATGACTTCTTCAGAGTTAACGCCAAACTTCTCAGGATGGAACAGCCTGTC TCATGAAAGGTTGGCTGGAGCACAGGGACTAAACATGGATTGGCAAGCACCACCAGCTGTTCCAAGTTCTCACATAGTGA AGAAGATATTGCGCTTGGATATTCCTATGGAAAGCTACTCAAATCTTAATTTTGTTGGGCGGCTTCTTGGTCCTAGGGGT AATTCACTGAAGCGAGTTGAAGCTACCACGGGTTGCCGTGTATATATCAGAGGGAAAGGTTCAATTAAGGACCTAGACAA GGAAGACTTGTTAAGGGGAAGGCCGGGCTATGAGCACCTGAGTGAACCGCTTCACATTTTGATTGAAGCTGAACTACCTG CCAATATTGTTGATGTAAGGTTGAGGCAAGCACAGGAAATCATCGAAGAGATACTTAAGCCCGTGGATGAATCACAGGAC TTTTACAAGAGACAGCAACTAAGAGAGCGTGCAATGCTCAATTCCAATTTTAGAGAAGAGAGCCCTCAACTTAGCGGTAG TGTCTCTCCATTCACTTCTAATGAAATAAAACGGGCAAAAACGGATCAATAA
Protein sequence (LotjaGi6g1v0045700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNMYNQISSPSSQRANSPNINMRSNFDVDSQYLAELLAEHQKLRPFMQVLPLCSRLLNQEILRASGKNGMLQNQGFSDF DRLQVLSPGHMTSSELTPNFSGWNSLSHERLAGAQGLNMDWQAPPAVPSSHIVKKILRLDIPMESYSNLNFVGRLLGPRG NSLKRVEATTGCRVYIRGKGSIKDLDKEDLLRGRPGYEHLSEPLHILIEAELPANIVDVRLRQAQEIIEEILKPVDESQD FYKRQQLRERAMLNSNFREESPQLSGSVSPFTSNEIKRAKTDQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 282 | 282 | 3.0E-169 | – | |
| PANTHER | 1 | 282 | 282 | 3.0E-169 | – | |
| MobiDBLite | 1 | 22 | 22 | - | – | |
| Pfam | 30 | 66 | 37 | 8.6E-10 | ||
| SMART | 133 | 233 | 101 | 1.6E-4 | ||
| CDD | 138 | 258 | 121 | 5.26931E-49 | – | |
| SUPERFAMILY | 139 | 258 | 120 | 2.23E-29 | ||
| Pfam | 150 | 182 | 33 | 5.0E-5 | ||
| MobiDBLite | 256 | 283 | 28 | - | – | |
| MobiDBLite | 256 | 276 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi6g1v0045700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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