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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0046800 |
| Transcript ID | LotjaGi6g1v0046800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT3G02820.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|P12451|POL_HV2SB Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A061FHZ8|A0A061FHZ8_THECC DNA/RNA polymerases superfamily protein; Found in the gene: LotjaGi6g1v0046800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:8625299..8632287) extracted from Lotus japonicus Gifu genome v1.2.
GTTCTACATGTGTGACCTTATTAAATTATATTTCTGATTTTTAAATGCTTTCATATGACTGACATGATTTTTATTCAGTT TCATTGAAACAGTTATTTATAAACTTGACAGTTTGATCATCTCTTATTTGAAATGATGCTTACTAATTTTATTAATAATA TATATTTGATCCACTCTGAACTGATAGTGAAAAACTCGTGCTTCATATGTTTCCCCTTTCCTGTTCATGGTGGTTGTTAA ATCCTCACTAAGTCTTTGTGACTTACCCCCTTTATTATTTTATCCACAGATTCTTCAGCAGCTGAGTAGCAAGCTGTTCC TGGATTCAGATTGTCAGTTGTCTTGCTGGTAGGCCTCCATTGGCTGGTGGCCTCATTGCTATTTTATTTTCTTTTGACTC TAGTTATCTGCAGCTATAGGGAGTCATAGGTGATTTTAGTTTGGGGTTGACGACATTGTTTTATTTTAAAAGTTGACGTT GAGCGTTGAATTTTGGTTTTGTACCTTTCCTTGAAATTATGGATTTGAAGGATATTATTTAGCAGGTTATGTTATTTTGA GATTACAGAAATACAGAGGAGACTCTGTCATTTTTTTTTTATAAATTTATGCGGACGTATTTATCATGGTGAATTGGTTA TAAATGGGTTATGTGTAAAAGGGTTGTCGGACTTGGGGTGATAGTCCGTGCGCCGGTCACGGCTTCGGATTTTTGGGTCG TGACAAAGTTGGTATCAGAGCCTTGGCTTTAGGTCCTATTAGCTGCAGACATGAGGTGGTAATAGAATCTTGCTAGTAAA TTGTGAACCGCGGCACAACTTACTTCCAAGATGCTATTAACTCCTCATGATAGTCTTTGTGTCTCTTTCAATTGTTTGCT TCGAGTCTATTCCTTCATTTGAATCAATGTCTTGTCTTACATTCTATGTCTACTCATTCTTAGGTGAGGATGCCACCAAA GACTAGGGGTGCTACTAGAGCGACGACTTCTCGCAATGCTATTCCCCAACCTGATGACCCTCCTCTGAGGGATCTTGTTG GAAGTCGTGGTGGGGGCAGGCGAGGGGGAACCAGGGCTGGTGAGCGCAGGTTTGTTGCTAATGTATTCAATGTTCAAGTT CCTAGACGAAGAAGAGGAACTCTAGGAGCGATAGATCTTTCAGACAATGAGCCAATAACAAATGAGGCTGAGCAAACACT TGGTGATGGATAACAACTTCAGATGGTTACTGGGCAACAGACAGAGGTTGGAGTGAGAGGGCAGCAATTGGTGGGGGCTA CTCAGGGGATTGCAGTCACACTGATTGATTTTATGAAGCTGAAACCCCCTACTTTTAGTGGATCTGGAACAAGCGATGAG CCACAACGATTCATTGATGCTTTGGAGAGGCTATGGAGGGCATTGGGATGCTCAGATACACGGGCAGTGGAGTTGGCATC ATTTCAGCTAGAGGGTGTAGCACGTGATTGGTACAATGTCTTGACTCGTGCGAAACCAGTGGGATCACCTCCATGGACAT GGGCTGATTTTTCGGCGGAATTCATGAACCGCTTCCTTCCACAGAGTGTTAGAGATGGCTTTGTTCGTGATTTTGAGAGG CTAGAACAAGCTGAGGGCATGACAGTTTCTGAGTACAGTGCTCATTTTACCCATCTTTCTAGATATGTTCCCTATCCTCT TCTAGAGGAGGAGCGTGTCAAGAGGTTCGTCAGAGGACTCAAAGAGTATTTGTTTAAATCTGTAGTTGGGTCTAAATCTT CCACTTTATCTGAGGTATTGAGTTTGGCACTTCTGGTTGAGCAGCGACAGAAGGAGAAGGGGAGTGCTACACAGAATTCA CAGAAGAGGCCGCGCTTTGAGGGATCTCATGGTACTCATTCGAGTCAAGGCAGTGGTTTTACACCTCGTCACCAGGGGCA TTCAAGGACAGTGGTATCTGGGAGTGCTTCTAGTGGCCATTCTTCAGGCTTCGTGCAGAATCGCAGATCTGATTTTGGTG GGTCTTCACGGTCTGTTACCCCTCAGAGACATTCTGGTGCTAGAGCTACATCATGCCCTACTTGTGGCAAGTTCCACTCT GGAACTTGCTTTGGAGATAATAGGGTGTGCTATCAGTGCGGTCGTTCAGGTCATGTTAGGAGGGATTGTCCTGCTTTGGC TCCAGCAGGAGCGAATGTAGCATCTTCTCAGGCTCTCACAGCACCTGTGAGGCAGGCTGACTCTTCTTTTGGTCGTGGTC ATGGGGGGTCTCAGCAGAGTGGAAGAGGACCCGGTGGCAGAGGTCAGGGACAGGCAGGGAGAGGTCAAGCTCGAGTCTTT GCTTTGACTCATCAGGATGCTCAGGCATTCAATGCAGTGGTTACAGGTACAATTTCTATATGTTCACGAGCTGCTCATGT TTTGTTTGATCCTGGAGCAACACACTCTTTTGTGTCATTGTTGTTTTCTTCTCAACTTAACAAATGTTCTTCTTTTTTGG AGGAGAAGTTGATTGTCTCTACCCCTCTTGGAGAGTCTATGTTAGCTAATTTTGTGTACCGTTCTTGCGAGATAATTATT GGGGGTAGGAAGCTATCGGTAGACCTGATAGCATTAGACATGGTTGATTTTGATGTAATTTTGGGTATGGATTGGTTAGC CTCACATCATGCTACTGTAGACTGTCATAACAAAATAGTGAGATTTGAGATACCCGGAGAGTCACCTTTCTCGTTTCAAG GAGAGCAAAGTTGGGCACCATATAATCTCATTTCAGCACTTAGAGCTAGCAAGTTACTTAGGAAGGGTTGTCATGGATAC CTGGCTTTGGTGAAGGATACTCAAGCAACTAAGTTAAATCTAGAAGCTGTTCCCGTAGTGTGTGAATTTCCAGATGTTTT CCCTGAAGATCTTCCTGGAGTACCACCTGATAGAGAGATAGAGTTCTCCATAGACTTACCTCCTGACACTCAGCCAATAT CCATACCTCCTTATCGTATGGCTCCAGCTGAGCTTAAGGAATTAAAAGAACAACTGCAGGATCTCATTGACAAAGACTTT ATTCGCCCTAGTACTTCTCCATGGGGAGCACCTGTTCTGTTTGTGAAAAAGAAGGATGGGACAATGCGGTTGTGTGTTGA CTACAGGCAATTAAATAAGGTGACAATAAAGAATAAATATCCTTTACCTCGCATTGATGAACTATTTGATCAGCTGCAAG GAGCTCAATGCTTCTCAAAGATTGACTTGCGTTCCGGATATCACCAGTTGAAGATAAGGAATGAAGATATTCCGAAGACA GCTTTCCGAACGCGTTATGGCCATTATGAGTTTTTGGTCATGTCGTTTGGACTCACAAATGCTCCTGCTGCTTTTATGGA CTTGATGAATCGAGTCTTTAAACCGTTTTTGGATCACTTTGTGATTGTATTTATTGATGACATTCTTATTTATTCGAAGA ATAAAGAGGAGCATGAACAACACCTCAGGTTGGTTTTGCAGACACTAAAAGAGAAGCAGTTGTATGCCAAATACTCCAAA TGTGAATTTTGGCTTGATAGTGTGGCTTTCTTGGGGCATGTGGTGTCAAAATATGGGATCAGTGTTGATCCGAGCAAGAT AGAAGCAGTACAGAAGTGGCCGAGACCTACTACAGTGAAGGAGATTCGGAGTTTTCTTGGTTTGGCCGGATATTATCGTC GCTTTGTAAAAGATTTCTCTAAACTTGCATCCCCGTTGACTAGGCTGACCCAGAAGAAAGTTGAGTTTAAATGGTCTGAT GCATGTGAGGAGAGCTTTCAGAAGTTGAAAGAACGTCTGACTTCAGCGCCTATCTTAGTTCTACCCTCAGGCGATGGAGG TTATACAGTTTATTGTGATGCTTCTAGAGTGGGACTTGGGTGCGTACTTATGCAACATGGCAAGGTCATTGCATACGCTT CTAGGCAACTCAAAAGGCATGAACAGAACTACCCTACACATGATTTGAAAATGGCAGCAGTGGTGTTTGCTCTTAAAATA TGGAGGCATTATCTTTATGGTGAGACTTGTGAGATTTTTACAGATCATAAAAGTCTTAAGTACATTTTTGAGCAGCGAGA CTTGAATTTAAGGCAGAGGAGGTGGATGGAGCTTCTGAAGGACTATGATTGCACAATCTTGTATCATCCAGGCAAGGCAA ATGTGGTTGCTGATGCCTTAAGCAGAAAATCCATGGGTAGTCTTAGTCACTTAGCTGTAGTGAAAAGACCCATAGTTAAA GAGTTCCAAGAACTTGTTGATAGTGGCGTACAATTTGAGGTTGAGAATTCTAATTCATTGTTGGCTCACGTGCAACTTCA CTCCACTTTGATTGATGATGTTAAACAAGCTCAAGGCCAAGATCCGGAGGTGGTGAAGATTGTGGGAGATGTTGCAGGTG GCAAAGTTTCACAATTTTCAGTTGGCTCTAATGGTGTTTTGCGATTTGGAACTCGCTTGTGTGTGCCTAATGTAGATAGT TTGAGAATGAGAATCTTGGAGGAGGCTCATCATTCGTCTTACACTATACACCCAGGTTCTAATAAAATGTATCAAGACTT AAAAGAGTTTTATTGGTGGGAAGAGATGAAGAAAGACGTAGCAGAATTTGTTTCTAAATGCTTGGTGTGTCAGCAAGTGA AGGCGGAGCACCAAAAGCCAGCTGGGTTACTTCAGTCTATTCAGATACCAGAATGGAAGTGGGAGGGTATTGCTATGGAC TTTGTAACAGGTTTGCCTAGAACCTCTAAGGGTCATGATTCTGTTTGGGTGATTATAGATCGGTTGACTAAATCTGCCCA TTTCTTGCCGGTGGAGACTATTTATACTGCGTCTCAATATGCTAAGATTTACCTGGATGAGATTGTTTCCTTGCATGGTG TACCTGTGTCTATAATTTCAGATCGAGGAGCTCAATTCACATCACAATTTTGGAGGTCTTTTCAAACTGCTTTGGGAACT CGATTAAAAATGAGTACCGCTTTCCATCCTCAAACTGATGGTCAATCCGAGAGGACTATTCATATCTTAGAGGATATGCT TCGTGCTTGTGTATTAGACCTCAAAGGGAACTGGGATCAATATTTGTCTTTGATGGAATTCGCTTATAATAATAACTATC AGTCTAGCATTCAGATGGCTCCATTTGAAGCCTTATATGGTAGGAGATGCAGATCACCTATAGGTTGGTTCGAGGTTGGA GAAGCCAAACTAGTAGGTCCAGAACTTATTCATGATGCAATAGAGAAGATTAAGTTGATTCGAGATCGCTTGGTTACAGC TCAAAGTATGCAGAAGTCTTATGCGGATAAGAGGCGACGCCCTTTAGAGTTTGCGGTTGGCGACCATGTCTTTTTACGTG TTTCTCCAATGAAAGGAGTTCTACGGTTTGGTAAAAAGGGAAAACTAAGTCCAAGGTTCATTGGACCGTTTGAGGTGTTA GAGAGGGTTGGCTCTGTATCTTATCGTTTGGCACTTCCGCCAGATCTATCTGCAGTTCATCCAGTTTTTCATGTTTCTAT GCTGCGGAAATACCTATATGATCCTTCTCACGTTATTCGTCATGAGGATGTACAGCTAGATGAACACTTATCCTACACAG AGCATCCGGTAGCTATAGTCGATAGACAAGTGAAGCGTCTACGTTCTAAAGATGTTGGTTCAGTTAAAGTTCTTTGGCGA GGACCATCGGGTGAAGAGGCGACTTGGGAGGCCGAGGATATCATGCGTGAAAAGTATCCTCACTTGTTCGAATCTCAAGG TTAGTATGACTTTAAAATTCGAGGACGAATTTTGTATAAGGGGGGAAGATTGAAACGCACCGTTTAATATTAATTTGGTT TGTTTTAATAAAAAGGAGATTAGAAAAAAAAAGAGAAAAAAAAAACAATTGTTTAATTAAAATTAGATTGCAACGTGCAG CCCCACACACCCCTTTTAGCAAACAGTGAAACCCAATTTCTTTCTCTCTGAATTCGCCGCCATCCTTCTCCTCATGTGCG CTACCTTGTGACAATCTCTTTCCCTTCAACTCCCATTCTTCTTCAAATAAAAGAACCCTACAGTACCCACGTGAGATAGG TGACAGTGAAGGAAGTGTTATTCCACCATATTAGATACACATTCATATTGGAAAGAATTCAAATTGGAAAGCTTTGGCAT TCACGTGGGAGACCTTGGGAATAATATTTGGAAACCAGAGTTGCAGAGAGGAGTACTTGGTATATTTCAAGTTGCATAGT TTAATTTTCTTTAAGGTATATTTCTCAACCCACAAATTTGGAGATTAGCATTGTACTGTATGTTAGATAAAGGTATAAGT AATTAGGGCCTTGGGTATACTGTTGGGGTTTCCATAGTTGCTCTCGGTAATATGACATAAGATTTTGGTTGCTGAAGGTG AAATTTAATTGTGGTGTTCAGATTTACCGGGTGAAGATATGTTGGGTTGTCGCGCATTTGCTGAGGACAGTCCAATTGTT TCGTCATAGCTGTGAGTGATTTTTCAATCACTGTGGCTTATTTTTATAATTATATAATTGTTGATTTGATTATTTTATCA TATCACTATTTATTTAAATTGGGGGAAACATGTTTTACAGTTCTTTAATTATCTGAAAGTTGGTTTTAGGAAGTTGATTT GGAATCTGATTATGAACTGATATGAAAACAATTTATATTGCTTTGATTTTTTGGAAATTATGTGAAACTGAGATTATGAA CTTGGAAAGTTGATTTTAAGACTTTTGATGAGACTTGAACTGATTTGAGAAAACGGTTTTGGGGATCCTTGATAGAACCC CGTAGCCGTTAACGGAGGTAACGGCCTAGGTGCACCTAGTTAGATTGATTCCGGGAGGAGAGGGCTATCCGTTAGATGGA GCCGCCAGTGCACGGAGAGGGCTATCAACGTGATGTAGCTTCCCCCGGTAATACGTTTCGACATGTGATACGAGAGAGGA AAGGGCTATCCGTTAGATGGAGCCGCCCC
CDS sequence (LotjaGi6g1v0046800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTACTGGGCAACAGACAGAGGTTGGAGTGAGAGGGCAGCAATTGGTGGGGGCTACTCAGGGGATTGCAGTCACACT GATTGATTTTATGAAGCTGAAACCCCCTACTTTTAGTGGATCTGGAACAAGCGATGAGCCACAACGATTCATTGATGCTT TGGAGAGGCTATGGAGGGCATTGGGATGCTCAGATACACGGGCAGTGGAGTTGGCATCATTTCAGCTAGAGGGTGTAGCA CGTGATTGGTACAATGTCTTGACTCGTGCGAAACCAGTGGGATCACCTCCATGGACATGGGCTGATTTTTCGGCGGAATT CATGAACCGCTTCCTTCCACAGAGTGTTAGAGATGGCTTTGTTCGTGATTTTGAGAGGCTAGAACAAGCTGAGGGCATGA CAGTTTCTGAGTACAGTGCTCATTTTACCCATCTTTCTAGATATGTTCCCTATCCTCTTCTAGAGGAGGAGCGTGTCAAG AGGTTCGTCAGAGGACTCAAAGAGTATTTGTTTAAATCTGTAGTTGGGTCTAAATCTTCCACTTTATCTGAGGTATTGAG TTTGGCACTTCTGGTTGAGCAGCGACAGAAGGAGAAGGGGAGTGCTACACAGAATTCACAGAAGAGGCCGCGCTTTGAGG GATCTCATGGTACTCATTCGAGTCAAGGCAGTGGTTTTACACCTCGTCACCAGGGGCATTCAAGGACAGTGGTATCTGGG AGTGCTTCTAGTGGCCATTCTTCAGGCTTCGTGCAGAATCGCAGATCTGATTTTGGTGGGTCTTCACGGTCTGTTACCCC TCAGAGACATTCTGGTGCTAGAGCTACATCATGCCCTACTTGTGGCAAGTTCCACTCTGGAACTTGCTTTGGAGATAATA GGGTGTGCTATCAGTGCGGTCGTTCAGGTCATGTTAGGAGGGATTGTCCTGCTTTGGCTCCAGCAGGAGCGAATGTAGCA TCTTCTCAGGCTCTCACAGCACCTGTGAGGCAGGCTGACTCTTCTTTTGGTCGTGGTCATGGGGGGTCTCAGCAGAGTGG AAGAGGACCCGGTGGCAGAGGTCAGGGACAGGCAGGGAGAGGTCAAGCTCGAGTCTTTGCTTTGACTCATCAGGATGCTC AGGCATTCAATGCAGTGGTTACAGATTTACCGGGTGAAGATATGTTGGGTTGTCGCGCATTTGCTGAGGACAGTCCAATT GTTTCGTCATAG
Protein sequence (LotjaGi6g1v0046800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVTGQQTEVGVRGQQLVGATQGIAVTLIDFMKLKPPTFSGSGTSDEPQRFIDALERLWRALGCSDTRAVELASFQLEGVA RDWYNVLTRAKPVGSPPWTWADFSAEFMNRFLPQSVRDGFVRDFERLEQAEGMTVSEYSAHFTHLSRYVPYPLLEEERVK RFVRGLKEYLFKSVVGSKSSTLSEVLSLALLVEQRQKEKGSATQNSQKRPRFEGSHGTHSSQGSGFTPRHQGHSRTVVSG SASSGHSSGFVQNRRSDFGGSSRSVTPQRHSGARATSCPTCGKFHSGTCFGDNRVCYQCGRSGHVRRDCPALAPAGANVA SSQALTAPVRQADSSFGRGHGGSQQSGRGPGGRGQGQAGRGQARVFALTHQDAQAFNAVVTDLPGEDMLGCRAFAEDSPI VSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 24 | 380 | 357 | 4.0E-105 | – | |
| PANTHER | 24 | 380 | 357 | 4.0E-105 | – | |
| Pfam | 71 | 168 | 98 | 7.6E-17 | ||
| MobiDBLite | 196 | 277 | 82 | - | – | |
| MobiDBLite | 197 | 275 | 79 | - | – | |
| Gene3D | 291 | 331 | 41 | 7.4E-6 | – | |
| SUPERFAMILY | 291 | 315 | 25 | 5.41E-6 | ||
| Pfam | 294 | 310 | 17 | 7.0E-6 | ||
| SMART | 295 | 311 | 17 | 5.0E-4 | ||
| ProSiteProfiles | 296 | 310 | 15 | 11.136 | ||
| MobiDBLite | 320 | 362 | 43 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi6g1v0046800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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