Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0052700 |
| Transcript ID | LotjaGi6g1v0052700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glutamate decarboxylase; TAIR: AT5G17330.1 glutamate decarboxylase; Swiss-Prot: sp|Q42521|DCE1_ARATH Glutamate decarboxylase 1; TrEMBL-Plants: tr|V7BM00|V7BM00_PHAVU Glutamate decarboxylase; Found in the gene: LotjaGi6g1v0052700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:9416987..9423633) extracted from Lotus japonicus Gifu genome v1.2.
AGTTATTGAATTTCCCCTACCACTCATTCTACTCATTGGCTGCTTTCATTTTAAAAATCCATCGTGTGAACATCAGAACA TGTTTATATTTTTTTTGATTGAAAAGAACATGTTTATAGTATTCGATTCTTCTTTTCATGAAAATTGATAAATTCCCATT GTTTAATGACTGACTTATTATGGAAAGAAAAGTAAACACTAAATTTATTTTATAATAAGATCGTTTATTGCTCTCACTCT ATTTAATTGTCTCCTTCCCCTGTTTTCAATCCAGCACACTCAGAGAGACCATTTCTCTCTCCACCGTACCTTTCTTTCTC TCTCTCTCTCTCTCTCCACCATGGTTCTGTCCAATACCGCCTCTTCTGGCTCCGAGAGTGACCTTTCCATTCACTCAACC TTTGCTTCCCGCTATGTCAGGACCTCACTTCCCAGGTAGATATTTTTCCGCATTAAATTTTTCATCTACTAATTAACTTT GTTTTATGTTGATGAAAGGTACCTAGATTATTATTATGATGTATAAATTGATATCATAATTCATAAGTGTTTTGATGTAT AAAAACATGGTATTCAGTTTCAATTATATGGATCTGTGTGTGTGAAATCAATTATGTACAAAAACTTCTGTATATAACTT TTGAATGACGTCAGAATTGATTCTGAAAAAGAGAAGTTGATATGAACATGCTATGGTTGGTGTATGTTTCATAGGTTCAA GATGCCTCAAGAGTCAATACCGAAGGAGGCAGCATACCAGATCATAAATGATGAGTTGATGCTGGATGGAAACCCAAGAT TGAATCTAGCATCATTTGTGACCACTTGGATGGAGCCTGAGTGTGACAAGCTCATCATGGCTTCCATTAACAAGAACTAT GTTGACATGGATGAGTACCCTGTTACCACCGAGCTTCAGGCAAGTCTACCCCTCCTTTGTTACTTTTAACTTTTGGTTCT GGCTCTCAAATTCTCAATGCATATAAAGCTTTCATCCTTTAAAACAATAAACCATAATAAAAATCTTAGATACATATGGA TCCATATGTCATTTTGATTGTGTTTTAATAAATTTAAATTTATATGTACCGATAGTGTATGTTACCTGGGATAAAATTTT CTACGAACATCCAATATATTGTCATTTTTATTCTTGATATTTGTTTTACTTTAAGATGTGCTAAAATAGTGAATTTTGAT GAATGTATGTGTAATATTCTAGAACATGACACATAATTGGAATTTTTTTTGAGAAAAGTGATAATATTAATAAAATATTA AGAGAGTGAGTGTCTAACAGACATATACATTTCTCAAATTTTTACTAATAATAATATTAACAAAATATTAACAAATGGCA GCTGGTAAGTTTTGTTCTAAACAAAAAATGGGTGGGTTAAGTTTAGCTAGTTTTTTTTTGTTTGAAAATCTAGTTTAGGT AGTTGACTGTCTTAATTGAGTTTTTAATGCCTTAACTTGTCATTAATTAATTGTCATACCCGTAACTACTACGCGTGAGC TTATAGATTAATTTTTTTTAAAAGGACAAAAAAAGTATATTTAATATTATTTATTTATGACATATACTTATAATTACTCA TAAAACTATTAAAAAGTCTGGTAAAGAGGACGTGTACTTGAAAATGCTGTTATAAATATAATATACAACTCAAAATATCT AATAGAAAATAATATTTAAAATTAATAAATGGAAAACTTAAAAAAAAAACTTCACTTTCAAAGCCGTTTCAATCTGTAAC AAAAAAAAAATCGTTTCAATCTTTTTAGATATAGGCCACCAAGTTGTCCTTACTCGTTAGATTCTTTTTTTTTTCTTTCT TCATCGGAAAACACGTTACATTCTTCTTTGAGTATTCTTTTCTATTTGTGTTTAATGCCTATTATAATCTTAATTTTCTT CTTTACTTTAATTGCAAAATTTAAGCAAACAGCCATCAAGGCATCAACCTTTCATCAAATTTAATCATAATTTAAACAAT AACTATTTGTCCACACCTCTAAAATTGAGGTGGAAAGAGGTGGAGGAGGAGAAAGATAGAAAGAAAAGAAAAGAAAGATA GAGCGAGAAAGTATAAGATGTGATAGATGATAAGAGAAGAGAGATAAAAATAAATATAGGTGGAAATGAAGTGTATAAAT AAGGAGGTGTGTATATATCATTACTCATCAACAAAATATCAGAAACATTCTTAAAAAACTGAAATTCGTAGTTGTACAGT TGGTCCCAAGATTGAAAAGGAAAGCTGTTGAATTGTCGGTGGAAAAATAAATTAAATATGAAAGATAAAGATTTCTTAAA TTAAATTAAATTATATTGTACCAAACTTTTTTGAATAAACTTCTATATGATATGACTTCCTTTTGTAAAAAAAAACTTAT ATATGATATAAGGTAAAAAATAATATTCATTAAAAATCTGACGGTTAAAATTATAATCCTGATGATATGCTGATACGTTT TTCAAAGAGAAGTAAGATATACTACTTTTTTTTATATATATAGTAAGATGTCCTACTTGAACCATCATTTGATGAAAATG GGTATAAATTAAGTATCTGGAAGCACATGCATATAAGTCTATCTTTTCTATTTTTTCCACCCCTCAACTTGCCTTATATA TGAAGCTGTCAACATATTATTAGTTGTGCGTCGACACATGAATTGGGGCCCATAATAAGAAAGGGAGCCTACCTTTAATA AATACTCTCTCCGGTCCTATTTATAAGCAACAAAAAAAAAATTCACATAGTTTAAGAAATGTAGTTAAACTAAATAAAAT GCATTAAATTTGTCTTAAATTAAAATGAACTTCCAAAATTACCCTTTGTTATTAGTGTTGGAAAGTGGAAAAGAAAGAGA ATAATTAATGAGACACATTTTACAAGTTAGAATTAATAAGGGCATCATTGGAAAAAATTAATTAATATAGCTCAAACTTT CATTTGGTTCTTATAAAAAGGACCATGATTTTTCTTCTCTTTCATGCTTATAAATAGGACCGGAGGGAGTAGCAAAAACG ACCGCAAAATACTGTGACCCACGCCTACAGATTATAGAGCGTGATCAAATTTGTCGGAAAAAAAAAAGTTTGTGGGGTTT GTTGGTGTAATTTGTAGGCAAATTTGAAAAAGTAAAAGGTTACCATAGCTTACCAAATTAAATCATAACTGAAGGCAAAA CATTATGACATGTTAGCAATAGCATTATGTAGTGCTTAGCTTTTTCAGTATGCACATCAAGATTGCACTTCTAGCGTGGA GATATCAGTGTCTTTTAGGATGACCTAATTAACATGAGTATACCTACAAATTAATAACCAACAATTCTTATGAGATTTAT TATCAGCACAAATTGACTAAGTTGGAAAAGATGAATCACTTTCTTTAAGAAGGTTGTATTTAATTTCTATTATTAATATG AGACTGTGTTGATGGACGACCTATAAGCAACCAAAGGTTTTAAAGACATACCCTGACTTGTGATGGTGACGAGAGCCAAA GCTACCCGAACAATTTTTAACCGAAAATACTATGACATTAATTATTATTTTTACTTGCTGTTGCTCTGTATAATAAATCC TTCGCAATAATCCATACATGGTGGTACACATACGGAAAAGTTTATCCAGGCCATTGCCGGATGAAGACATAGTAGGCCAT TTCACTAACAAAAATGCTGAAATCTCAATGACCAAGAAATTCTTCCAATTACTTAAACAACAGTAGATGTGTTTTCTTGT GATTTTTACAGTTTTGACTGGTATGTTTGCAGAATCGGTGTGTGAACATGATAGCACATCTTTTTAATGCACCACTTGGA GACTCTGATACTGCAGTTGGTGTTGGCACTGTTGGCTCATCAGAGGCCATAATGTTGGCTGGATTGGCATTCAAAAGAAC GTGGCAGAACAGAAGGAAAGCAGAGGGAAAACCCCATGACAAGCCCAACATTGTCACCGGAGCCAACGTTCAGGTACGTG CTTAAAGATAAAAAGTGAAAGAAACTCTTCTAATGAATTTAATTGAAAGTCAATGCACGTTTTACTCAACTGGTATATAA ACACAGGCTACTAATCATGAGTTCTATTTCTGTTCATGTGAAGGTTTGCTGGGAGAAATTTGCAAGATACTTTGAGGTGG AGTTGAAAGAGGTGAAGCTGAGTGAGGGATACTATGTAATGGACCCTCAAAAGGCTGTGGATTTGGTAGATGAGAACACC ATTTGTGTTGCTGCTATTCTTGGTTCCACATTAAATGGAGAGTTTGAAGATGTCAAGCGCTTAAATGATCTTCTAATTGA AAAGAACAAGGAAACTGGGTATATGTCTCTCTTTTTCTTTCTTGCACCAAGCTTACATTGTTCCTAAACTCAATAAATTG ATTGACATGTGAAATTGTTTGGTAGATGGGACACTCCTATTCATGTTGATGCAGCTAGTGGCGGCTTCATTGCCCCGTTT ATTTATCCAGAGCTTGAGTGGGACTTTCGCTTACCACTAGTGAAGAGCATCAACGTTAGTGGCCACAAGTATGGTCTAGT CTATGCTGGAATTGGTTGGGTTATCTGGAGAAACAAGGAGGACTTGCCTGAGGAACTCATCTTCCATATCAACTATCTCG GAGCTGATCAACCCACCTTCACCCTCAACTTCTCCAAAGGTAACTAATTGCATGTTTGGATCATGTATCTTTTCTCAAAA TCAGTTATGGCACGTATAAGCTACTCACAGTCACATAGGCTTCTACTCATAAATGATTTGGGTTGCAGAATCAATTGTAA GAGAATTTCCAAACATCCACTAATGCATATTCATAGCTTGTTTGGATAAGTTTCTTTTTCAACATAATCAATTTGGCACC GACAAGCTCTTCCTATAATTGATTTTGTTTCAAAATCAATTGTAAGCAAAATCAATTGTAGAAGAATTTCTGATCACTGC AGAATAACAAAGTATATTTACTTACACTTTCTACCAGTCATTTATTAGTTTATTATGCACGAGTGTACTCATTTCTTTCA CAAAATATGCAATGTGCAGGTTCTAGCCAAATCATAGCTCAATACTACCAACTAATTCGCCTTGGTTATGAGGTATTAAA ACCAGTCAGCAAACCCATTTATAATTGCAGTGGTGTTAGTGGTTACTGTTACACACTAATATAACACCTCTAACTCACAC ACCACATCATTTTTTTATAGATTCATGTCGCTTCTTGTTCACATGAAAACTTATTGTGATTGCAGGGCTATAAACATGTG ATGGAAAACTGCAGAGACAACATGTTAGTACTAAAAGAGGGGCTTCAAAAAACTGGTCGCTTTGAAATTGTGTCCAAAGA CAATGGTGTGCCTCTGGTGGCCTTCACACTGAAGGACCACACACACTATAATGAATTCCAAATCTCAGACTCGCTGAGGC GCTTCGGGTGGATAGTGCCGGCATACAGCATGCCCCCAAATACTCAGCACGTGACCGTGGTCCGTGTAGTCATTAGGGAG GACTTCTCAAGGACCCTAGCAGAGCGTCTTGTGGCTGATATTGAGAAAGTGCTGCACGAGCTTGATTCACTCCCTGCAAG GGTGATAAGTAGCACCACTGTGACTGTTACCGGAGAAGAAGATGTGAACAAGAATGGGAAGGTTAAGAAGAGTGCTATTG AGACACAGAGGGAAATCACTACACTTTGGAAGAATTTTGTGTTGGAAAGGAAGAAGCTGAATGACAAGATGAGTGTTGTT TGTTAAGAGAGTTATTCAAATGGAAACATGGGTGTGTGTTGAATCTATGTCTGAGTTAATGGCAGTTAGTACATTGGATT GAGTCGAGCAATTTCTCTGCTTCCAGTTAATTGCTCAATGGAAAAACCAAATTGTGTTTTCATCTCGATGAGAGCATGAC TTGCTTTATTTTTAAAGAGTGAATCATATTTAATAAGGGTTTTGATACATTCATACTTCACTTTCTCTTTTGTCCTATTT CTATTTAATTTCTCTTTTTATCTTTATCTTCTTTTCCGAACACATCACCCTTTATATTGCTCATTTTTGTTTCTAACTCT TTGGATGTGGATAGATTTGGAGTGTCAACATGATTTTTTCCTATTTATCTTACGTGAAATTTGTTCAATTCAACATTCTA GGCATTGCCTTCTAATTTTAGTTTACAAGCCATTACAAAGGTTGTTATGCATTACCTTCTAATTTTAGTAAAGTTGTTGT TCCTGGTGGGAGTCTTCTGTCCTGTTAAGTGTGAACTAAAGAATTTGGTTACTAACTTATTAGAGAAACACATAAAAAAT GGGGTAAAAGATGAGTGAGCACAGAATAGGCATCATAGGAACAGACTTAATTAGCGTATGTTTGGAAAGTACGTCTTCTA TTATTGACTCTACAGTCAGGAACCAATTACATAGAGAAGCTTTTGTGAGTAGCTTCTCGGTTTCAGACTTGATTCTGAGG AAAGAAAAGTTTGATCCAAAGTCCAAACATGCTATTAGTTCTATAACATAATTTACCATCAGCTAAGACAAAGAATAAAA GGAGAAACTCACATGATTAGCATGCCAGTTGTAGAGCTCCTTTTTAAGCTGGCTTTAATTGTTTTTAGGAGCTGATCCAC GAGTTTC
CDS sequence (LotjaGi6g1v0052700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCTGTCCAATACCGCCTCTTCTGGCTCCGAGAGTGACCTTTCCATTCACTCAACCTTTGCTTCCCGCTATGTCAG GACCTCACTTCCCAGGTTCAAGATGCCTCAAGAGTCAATACCGAAGGAGGCAGCATACCAGATCATAAATGATGAGTTGA TGCTGGATGGAAACCCAAGATTGAATCTAGCATCATTTGTGACCACTTGGATGGAGCCTGAGTGTGACAAGCTCATCATG GCTTCCATTAACAAGAACTATGTTGACATGGATGAGTACCCTGTTACCACCGAGCTTCAGAATCGGTGTGTGAACATGAT AGCACATCTTTTTAATGCACCACTTGGAGACTCTGATACTGCAGTTGGTGTTGGCACTGTTGGCTCATCAGAGGCCATAA TGTTGGCTGGATTGGCATTCAAAAGAACGTGGCAGAACAGAAGGAAAGCAGAGGGAAAACCCCATGACAAGCCCAACATT GTCACCGGAGCCAACGTTCAGGTTTGCTGGGAGAAATTTGCAAGATACTTTGAGGTGGAGTTGAAAGAGGTGAAGCTGAG TGAGGGATACTATGTAATGGACCCTCAAAAGGCTGTGGATTTGGTAGATGAGAACACCATTTGTGTTGCTGCTATTCTTG GTTCCACATTAAATGGAGAGTTTGAAGATGTCAAGCGCTTAAATGATCTTCTAATTGAAAAGAACAAGGAAACTGGATGG GACACTCCTATTCATGTTGATGCAGCTAGTGGCGGCTTCATTGCCCCGTTTATTTATCCAGAGCTTGAGTGGGACTTTCG CTTACCACTAGTGAAGAGCATCAACGTTAGTGGCCACAAGTATGGTCTAGTCTATGCTGGAATTGGTTGGGTTATCTGGA GAAACAAGGAGGACTTGCCTGAGGAACTCATCTTCCATATCAACTATCTCGGAGCTGATCAACCCACCTTCACCCTCAAC TTCTCCAAAGGTTCTAGCCAAATCATAGCTCAATACTACCAACTAATTCGCCTTGGTTATGAGGGCTATAAACATGTGAT GGAAAACTGCAGAGACAACATGTTAGTACTAAAAGAGGGGCTTCAAAAAACTGGTCGCTTTGAAATTGTGTCCAAAGACA ATGGTGTGCCTCTGGTGGCCTTCACACTGAAGGACCACACACACTATAATGAATTCCAAATCTCAGACTCGCTGAGGCGC TTCGGGTGGATAGTGCCGGCATACAGCATGCCCCCAAATACTCAGCACGTGACCGTGGTCCGTGTAGTCATTAGGGAGGA CTTCTCAAGGACCCTAGCAGAGCGTCTTGTGGCTGATATTGAGAAAGTGCTGCACGAGCTTGATTCACTCCCTGCAAGGG TGATAAGTAGCACCACTGTGACTGTTACCGGAGAAGAAGATGTGAACAAGAATGGGAAGGTTAAGAAGAGTGCTATTGAG ACACAGAGGGAAATCACTACACTTTGGAAGAATTTTGTGTTGGAAAGGAAGAAGCTGAATGACAAGATGAGTGTTGTTTG TTAA
Protein sequence (LotjaGi6g1v0052700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLSNTASSGSESDLSIHSTFASRYVRTSLPRFKMPQESIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIM ASINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSDTAVGVGTVGSSEAIMLAGLAFKRTWQNRRKAEGKPHDKPNI VTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQKAVDLVDENTICVAAILGSTLNGEFEDVKRLNDLLIEKNKETGW DTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLN FSKGSSQIIAQYYQLIRLGYEGYKHVMENCRDNMLVLKEGLQKTGRFEIVSKDNGVPLVAFTLKDHTHYNEFQISDSLRR FGWIVPAYSMPPNTQHVTVVRVVIREDFSRTLAERLVADIEKVLHELDSLPARVISSTTVTVTGEEDVNKNGKVKKSAIE TQREITTLWKNFVLERKKLNDKMSVVC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 507 | 507 | 0.0 | – | |
| PANTHER | 1 | 507 | 507 | 0.0 | ||
| TIGRFAM | 19 | 447 | 429 | 3.6E-211 | ||
| SUPERFAMILY | 19 | 447 | 429 | 1.66E-135 | ||
| Pfam | 36 | 384 | 349 | 1.8E-107 | ||
| CDD | 62 | 442 | 381 | 1.70978E-105 | – | |
| Gene3D | 69 | 363 | 295 | 8.7E-87 | ||
| Gene3D | 364 | 451 | 88 | 1.8E-35 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Glutamate decarboxylase activity | Catalysis of the reaction: L-glutamate = 4-aminobutanoate + CO2. | ||
| Biological process | Glutamate metabolic process | The chemical reactions and pathways involving glutamate, the anion of 2-aminopentanedioic acid. | ||
| Molecular function | Carboxy-lyase activity | Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound. | ||
| Biological process | Carboxylic acid metabolic process | The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-). | ||
| Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. |
Expression pattern of LotjaGi6g1v0052700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…