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LotjaGi6g1v0052700.2

Overview

Field Value
Gene ID LotjaGi6g1v0052700
Transcript ID LotjaGi6g1v0052700.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Glutamate decarboxylase; TAIR: AT5G17330.1 glutamate decarboxylase; Swiss-Prot: sp|Q42521|DCE1_ARATH Glutamate decarboxylase 1; TrEMBL-Plants: tr|A0A0L9VCS2|A0A0L9VCS2_PHAAN Glutamate decarboxylase; Found in the gene: LotjaGi6g1v0052700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:9420745..9422752) extracted from Lotus japonicus Gifu genome v1.2.

GTGATTTTTACAGTTTTGACTGGTATGTTTGCAGAATCGGTGTGTGAACATGATAGCACATCTTTTTAATGCACCACTTG GAGACTCTGATACTGCAGTTGGTGTTGGCACTGTTGGCTCATCAGAGGCCATAATGTTGGCTGGATTGGCATTCAAAAGA ACGTGGCAGAACAGAAGGAAAGCAGAGGGAAAACCCCATGACAAGCCCAACATTGTCACCGGAGCCAACGTTCAGGTACG TGCTTAAAGATAAAAAGTGAAAGAAACTCTTCTAATGAATTTAATTGAAAGTCAATGCACGTTTTACTCAACTGGTATAT AAACACAGGCTACTAATCATGAGTTCTATTTCTGTTCATGTGAAGGTTTGCTGGGAGAAATTTGCAAGATACTTTGAGGT GGAGTTGAAAGAGGTGAAGCTGAGTGAGGGATACTATGTAATGGACCCTCAAAAGGCTGTGGATTTGGTAGATGAGAACA CCATTTGTGTTGCTGCTATTCTTGGTTCCACATTAAATGGAGAGTTTGAAGATGTCAAGCGCTTAAATGATCTTCTAATT GAAAAGAACAAGGAAACTGGGTATATGTCTCTCTTTTTCTTTCTTGCACCAAGCTTACATTGTTCCTAAACTCAATAAAT TGATTGACATGTGAAATTGTTTGGTAGATGGGACACTCCTATTCATGTTGATGCAGCTAGTGGCGGCTTCATTGCCCCGT TTATTTATCCAGAGCTTGAGTGGGACTTTCGCTTACCACTAGTGAAGAGCATCAACGTTAGTGGCCACAAGTATGGTCTA GTCTATGCTGGAATTGGTTGGGTTATCTGGAGAAACAAGGAGGACTTGCCTGAGGAACTCATCTTCCATATCAACTATCT CGGAGCTGATCAACCCACCTTCACCCTCAACTTCTCCAAAGGTAACTAATTGCATGTTTGGATCATGTATCTTTTCTCAA AATCAGTTATGGCACGTATAAGCTACTCACAGTCACATAGGCTTCTACTCATAAATGATTTGGGTTGCAGAATCAATTGT AAGAGAATTTCCAAACATCCACTAATGCATATTCATAGCTTGTTTGGATAAGTTTCTTTTTCAACATAATCAATTTGGCA CCGACAAGCTCTTCCTATAATTGATTTTGTTTCAAAATCAATTGTAAGCAAAATCAATTGTAGAAGAATTTCTGATCACT GCAGAATAACAAAGTATATTTACTTACACTTTCTACCAGTCATTTATTAGTTTATTATGCACGAGTGTACTCATTTCTTT CACAAAATATGCAATGTGCAGGTTCTAGCCAAATCATAGCTCAATACTACCAACTAATTCGCCTTGGTTATGAGGTATTA AAACCAGTCAGCAAACCCATTTATAATTGCAGTGGTGTTAGTGGTTACTGTTACACACTAATATAACACCTCTAACTCAC ACACCACATCATTTTTTTATAGATTCATGTCGCTTCTTGTTCACATGAAAACTTATTGTGATTGCAGGGCTATAAACATG TGATGGAAAACTGCAGAGACAACATGTTAGTACTAAAAGAGGGGCTTCAAAAAACTGGTCGCTTTGAAATTGTGTCCAAA GACAATGGTGTGCCTCTGGTGGCCTTCACACTGAAGGACCACACACACTATAATGAATTCCAAATCTCAGACTCGCTGAG GCGCTTCGGGTGGATAGTGCCGGCATACAGCATGCCCCCAAATACTCAGCACGTGACCGTGGTCCGTGTAGTCATTAGGG AGGACTTCTCAAGGACCCTAGCAGAGCGTCTTGTGGCTGATATTGAGAAAGTGCTGCACGAGCTTGATTCACTCCCTGCA AGGGTGATAAGTAGCACCACTGTGACTGTTACCGGAGAAGAAGATGTGAACAAGAATGGGAAGGTTAAGAAGAGTGCTAT TGAGACACAGAGGGAAATCACTACACTTTGGAAGAATTTTGTGTTGGAAAGGAAGAAGCTGAATGACAAGATGAGTGTTG TTTGTTAA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0052700.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATAGCACATCTTTTTAATGCACCACTTGGAGACTCTGATACTGCAGTTGGTGTTGGCACTGTTGGCTCATCAGAGGC CATAATGTTGGCTGGATTGGCATTCAAAAGAACGTGGCAGAACAGAAGGAAAGCAGAGGGAAAACCCCATGACAAGCCCA ACATTGTCACCGGAGCCAACGTTCAGGTTTGCTGGGAGAAATTTGCAAGATACTTTGAGGTGGAGTTGAAAGAGGTGAAG CTGAGTGAGGGATACTATGTAATGGACCCTCAAAAGGCTGTGGATTTGGTAGATGAGAACACCATTTGTGTTGCTGCTAT TCTTGGTTCCACATTAAATGGAGAGTTTGAAGATGTCAAGCGCTTAAATGATCTTCTAATTGAAAAGAACAAGGAAACTG GATGGGACACTCCTATTCATGTTGATGCAGCTAGTGGCGGCTTCATTGCCCCGTTTATTTATCCAGAGCTTGAGTGGGAC TTTCGCTTACCACTAGTGAAGAGCATCAACGTTAGTGGCCACAAGTATGGTCTAGTCTATGCTGGAATTGGTTGGGTTAT CTGGAGAAACAAGGAGGACTTGCCTGAGGAACTCATCTTCCATATCAACTATCTCGGAGCTGATCAACCCACCTTCACCC TCAACTTCTCCAAAGGTTCTAGCCAAATCATAGCTCAATACTACCAACTAATTCGCCTTGGTTATGAGGGCTATAAACAT GTGATGGAAAACTGCAGAGACAACATGTTAGTACTAAAAGAGGGGCTTCAAAAAACTGGTCGCTTTGAAATTGTGTCCAA AGACAATGGTGTGCCTCTGGTGGCCTTCACACTGAAGGACCACACACACTATAATGAATTCCAAATCTCAGACTCGCTGA GGCGCTTCGGGTGGATAGTGCCGGCATACAGCATGCCCCCAAATACTCAGCACGTGACCGTGGTCCGTGTAGTCATTAGG GAGGACTTCTCAAGGACCCTAGCAGAGCGTCTTGTGGCTGATATTGAGAAAGTGCTGCACGAGCTTGATTCACTCCCTGC AAGGGTGATAAGTAGCACCACTGTGACTGTTACCGGAGAAGAAGATGTGAACAAGAATGGGAAGGTTAAGAAGAGTGCTA TTGAGACACAGAGGGAAATCACTACACTTTGGAAGAATTTTGTGTTGGAAAGGAAGAAGCTGAATGACAAGATGAGTGTT GTTTGTTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0052700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MIAHLFNAPLGDSDTAVGVGTVGSSEAIMLAGLAFKRTWQNRRKAEGKPHDKPNIVTGANVQVCWEKFARYFEVELKEVK LSEGYYVMDPQKAVDLVDENTICVAAILGSTLNGEFEDVKRLNDLLIEKNKETGWDTPIHVDAASGGFIAPFIYPELEWD FRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGYEGYKH VMENCRDNMLVLKEGLQKTGRFEIVSKDNGVPLVAFTLKDHTHYNEFQISDSLRRFGWIVPAYSMPPNTQHVTVVRVVIR EDFSRTLAERLVADIEKVLHELDSLPARVISSTTVTVTGEEDVNKNGKVKKSAIETQREITTLWKNFVLERKKLNDKMSV VC
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43321:SF20
1 402 402 5.3E-261 –
Pfam
PF00282
1 279 279 4.6E-86
IPR002129
PANTHER
PTHR43321
1 402 402 5.3E-261
IPR010107
TIGRFAM
TIGR01788
1 342 342 2.8E-166
IPR010107
Gene3D
G3DSA:3.40.640.10
1 258 258 2.7E-74
IPR015421
SUPERFAMILY
SSF53383
1 342 342 2.25E-108
IPR015424
Gene3D
G3DSA:3.90.1150.160
259 346 88 1.2E-35 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004351
Molecular function Glutamate decarboxylase activity Catalysis of the reaction: L-glutamate = 4-aminobutanoate + CO2.
Subterm of
GO:0006536
Biological process Glutamate metabolic process The chemical reactions and pathways involving glutamate, the anion of 2-aminopentanedioic acid.
Subterm of
GO:0016831
Molecular function Carboxy-lyase activity Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound.
Subterm of
GO:0019752
Biological process Carboxylic acid metabolic process The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-).
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0052700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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