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LotjaGi6g1v0053600.2

Overview

Field Value
Gene ID LotjaGi6g1v0053600
Transcript ID LotjaGi6g1v0053600.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Glucan 1,3-beta-glucosidase; TAIR: AT1G13130.1 Cellulase (glycosyl hydrolase family 5) protein; Swiss-Prot: sp|Q5B5X8|EXGA_EMENI Probable glucan 1,3-beta-glucosidase A; TrEMBL-Plants: tr|I3SE04|I3SE04_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0053600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:9606377..9611328) extracted from Lotus japonicus Gifu genome v1.2.

GTGGCTTACAAATGGCAACAGACCTAGTAGGAAGTAGATAATTACTAGAATGCACCTAATATTCAAGTAAACTCTAAGCA AAGACAATTGCACAAAAACAATTTATACAGTACACAAGAGAGAATGTCTCATCACTCCACCGTGCAAGCACTGTGTAATA AGATGGGCAACCAATTCTTCTACACAAATTTGCTATTCATTTTCTACATCTCATGCCATTATTATGTTTCTGTTGCTCAA ACTGAAAATTCCACTTTGTCAATCAAAGCTGTGAATCTTGGAAATTGGCTTGTCATAGAAGGGGCGATGAAACCTTCTCT CTTTGATGGAATAACCAACAAAGATCTTTTGGTACATTGATCTCTTTATTCTATCATATTTGTATCTTTTGGCAATGCCT TCTATTTCCAGTATTTCTATCAATAAATTTTATATTACTAGTGTAGGACTTGTTTATTTTTTTTTATAGTTTAGCCTCCT AGTTCCCTGATGGTAGCATTGATTTGGTCATTTTCAGGATGGAACTCAAGTTCAGTTCATGTCTGCCAAGTTACAGAAGT ATCTCTGCGCAGAACATGGGGGAGGATCCATTGTTGTTGCTAACCGCACCAAAGCTTTGAGTTGGGAAACTTTCAGGGTT CGTTCCTCTTTCATCATGTAGAGGGGAAACTTTCAGCCACTAATATGAGTTTTCATTATCTATTTGTAACATTTATTTTG TGAAACTATGAACAATGCAGTTGTGGAGGGTCAATGAATCAGCCTTCAATTTCAGAGTGTCTAACAAGCAGTTTGTGGGA TTGGGAAATCAAGCTGGAGCAAACAAATTAGTGGCTGGTTCAGACTTACCTGGCAACATGGAAACATTTCAGATTGTGAG AAATGATGGTGATCCAAAAAAGATTCGCATCAGAGCACCAACTGGTCTGTTTTTACAGGTAAATTGACTTTAGTTATGCT ATTGATCAAATGATGTTGCTGAAGATTTAAACCCTCTCGAATCTAATCTTTTGGGACTGGTTGAAATGTAGTAAACTCTC ACTAACCATATTATGAGTTTTATCAGTGGTAATTGCTTCCAGATTTTGTAATGTTATGTTTTTATAATGTATATCAGGCC ATATCAGAGACTCTAGTGACTGCAGATTATGAAGGATCCAGCTGGGAGGATAATGACCCTTCAGTCTTCAAAATGATAAT TTTGAATCACACCATATTAAAAGGCGAATACCAACTTACAAATGGTTATGGCCCAGACAGAGCTCCAACAATCATGCAGG TACAATATCTGCTTTAAAGAGAACAAGCACCAGCAGTTAAATTTATAGCAGATTTTAATTGATTGATAGAGCTATGCTAG ACATGCAGGATCACTGGAATACATATATCACTGAAGATGATTTCAGATTCATATCAACAAATGGCTTAAATGCTGTTAGA ATTCCAGTTGGGTGGTGGATAGCTCAAGACCCAACACCACCAAAGCCATTTGTAGGAGGATCCTTGGAAATACTTGACAA TGCATTCACATGGGCACAGTAAGACTAATTATTTTATACCATGAAATAAAATAGACATTAATCTCTCAATCATCATGACT CATCATAATTAATGTGATTGCAGAAAGTATGGATTGAAGGTAATTGTGGACCTGCATGCTGTTCCAGGTTCACAAAATGG ACAACCTCACAGTGCAACAAGAGATGGATATAGAGAATGGGGAGATTCATACATACCTGATACTGTGGCAACCATAGATT TCCTAGCTGAAAGGTTTAATTTAAATTAAATGTCCCTTTTAATCTTCTATAAAGTTATATTCTATTCATAAACACACTAC ATTAGTTTTTTCTTTTGGTCAATACACTATATTAGTTTTGAATGTTAACTTTATGCCTTATCAGAATTGCTTATAGTAAC TCCTAAGGATTTGTTTGTTTGGAATGTGTCACTATTATCTGACCTCTAAAGATTGCTCCTAAACCCACTAACTCTACAAT TGTTCTTCAGATATGCTGACAGTGAAACACTACTTGCAATAGAGCTGATGAATGAGCCTCAAGGCGTTAATTTGCAAAGC CTTAAAAAGTATTACCAAGCAGGTTATGAAGCAGTAAGAAACCACTCATTGAGTGCTTATGTGATCATGTCTAACCCTCT GGATAGAGATTCAAGAGTGCTCCTGCAATTTGCTGGAGCTTTCAGTGGAGTAGTCATTGATGTGCATTACTACAATTTCT TTTCGGATAAATTCTCCAAAATGAATGTGCAGCAGAACATCGATTATATTAAAAAATACAGAGCTTCAGATCTTAGCTCT CTTACCACATCTTATGGACCCCTCGTATTTGTAGGCAAGTATTGTACTTCTACATAATCAAATGCTTAGATTTTGTTATG GAATTGAGATAAATTAAAGAAATGTATAGAATAACAGATTGAATTGGAATCTGACAGGGGAGTGGAGTGGTGCCTGGAAA GTGCAGAATGCATCAAAGAAAGATTACCAACAATTTTTGCAGATTCAAAAGGAGGTATACTCTCATGCCACGTTTGGATG GGCTTATTGGGCGTACAAATGTGACTCTAACTACTGGAGCCTCAAGTGGATGATTGACAACAATTATGTCAAGTTTTAGT GTGTTATAGATGGCAATTGAAATAGGTGCAAGTGTAATTTAAAAAATAAGATAAGATGCTACTGTCATATATGTAACCTA CACTTGAAAAACATGTAATTTACAACCAACTAGTGCTTTTTAGTTAATGAACTTCTAAACAATCATTGGCTAAATATTAT GTGCAACTTACTGCACTTTCAGCTACTTCATGGAAATATTCATTATTTGTTCACTAGTGACAACATTGAGCATCAGACCT GGATAATTAACATGGCTCCATCATTATTCATGGTCGCTGCTTCAAGCATGTCTAGAAATCCTTCAACATTTATTCTAAAG CCAAAATCGATACTGGGGAGAAGCTTCAGCGAGTAACTTCTGGGCGCCAGAATTGATTCTGAGGAAAAATAAGTTGATCT ATAATGATTTTACAACTATTTACAAAGCAACTGGTTTGAAGCCAATCTCTATGGATTTCCTCACAGCATCAACAACCAGT TGAGTCTTTCTACTAATTTCAGGCCATTTGGAAGAGGGTTTGGACCCGCAATCTCTAATGCTTGTAGCAAGCCTAGCAAG TTCTTGCACCATGAGAGCCTCTTGTGGGAGCTCATTGTCCACATGAACTTCCTCTGGTCTCACATTCCACCCAATGTGAA GGTCCACAAACTTTGCACCAAATGTGAAGTCAAAGGAAGCATCAGTCTCCTGATAGGGGATTATGAAGTCCTTGAGATGC AGGGACCCATTGGAACCACAAAGGCTCAAGTCCATGGATGTGTGAGAAAGAAATGAGCAGTGAACTGTTGCAACTGCTTG GTCTGCTGGTTGTTGGCCTTGGCACCACTGCAGAGAGGCTGTGAAAGACAGTATGACTCCAGCAGCATTTCGGGTGATGT CTGGAAGAGCGGTGACCGTGGTTGGGAGGTTGTAGCTCTTTGCCCACAAAGAAGCACCAATGCAATACCAGCCCAAGTCA CCAAGTGCACCAAGGCCATCCAAGTCTGGCTTTACTCTGATGTTGTTCTCTAAGAATTCGGGTGGTACTGGCATTGTTGA AGTGCTATGGATCTTCAATAAAACATTGTAAATTATGTTATACAATGTAAGATTATAGGTACAAAACCTGAACTAAAACT GAATACAAAGTTACTAAACCAAAAATCAACAGCATTGCTAGTATTTAGTACGGGCCTTGTCTCTACGAATTGTAAGAATT GTATTTTCAACCAATCAGAGATGTTCTTTGCCGGAAATCATGGTGGGTGGTTAATAAAAAACTTTAAATACACCCTTTTG CTTCACTTCATATGTTAACTTCATTTACATAATTGGTGTGCTTGTATTTCTGTGGCGAGAGAAATTTGAATGTGTTTTTA TCAATTCCTGTCTCTTGTTGTTGGAATAACTTGTGTCATTGAAATGAATGTACATTTGACTAATTCTACATAAATATAAT CACATTGTCAATATCATGGATTTCACTCCTCTAAAGAGACTGAACTCACTTTAAACAGTAAAGTAAGTTATTACACCATT AGTAGTGATTATCTAATTTAAAAAGTAAATAAAAACAACTTAATTAAAAAAATCTTAACCAATGTGCTAAAGTGACTGGT TAAAATATAAATTTAACATTATCTTAATTAATTAATTAACTAATTGTGGTTTGTGCCTGATGATAGTGAATTTCAATCAA GTGACGCATGTAACAGGTCCTTACAAACTGAACTGGTCCAACAGTGGTGGAATGAGAAAGAGAGAGCAATTGTTCCATGT GGGCAGTCCTAGGGTGATGAAGCCACATACTCCCATCCATGAACTGTACGCCGTTGGATTCGCACGCTTCTAAGATCAGA TCTAGCTGCGCCACGTCAAGCGCCGCGGGCTTCTCCACCAGCACGTGCTTCCCCTTACTCGCCGCCGCAACCGCCCACCG CACGTGGAGGCTCGTAGGGAGGGGAATGTACACGGCGTCCACGCCGGGGTCCTCCACCACCTCGTCGTAGCTGCCGTAGA TTCTCACGGTGGCTGGTAACTGATTCTCGGCGGCGAAGGTGTTGGCCTTTTGCTTGGAGCGGCTGGCGATGGCGGAGAGT GTGGCGTTGGGGGCGAGAGCAATGGCTCGAGCTAGTTTTCTGGCGATGTTGGCGCAGCCTATGATGCCGAAACGAATCGT TTCGTTCTCGGCCATGTTATGGGTGTCGTAATTTTGGAAGAGCTTAGTTTAAGATAGCAGTAGCACCATGGTTAGCTTCA CGTGTTTGTGGAAAAAGGATAGGATAGTGTTCATTCCGATACCACAAATTAAAAAATGAAATAAAAATTGGG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0053600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTCATCACTCCACCGTGCAAGCACTGTGTAATAAGATGGGCAACCAATTCTTCTACACAAATTTGCTATTCATTTT CTACATCTCATGCCATTATTATGTTTCTGTTGCTCAAACTGAAAATTCCACTTTGTCAATCAAAGCTGTGAATCTTGGAA ATTGGCTTGTCATAGAAGGGGCGATGAAACCTTCTCTCTTTGATGGAATAACCAACAAAGATCTTTTGGATGGAACTCAA GTTCAGTTCATGTCTGCCAAGTTACAGAAGTATCTCTGCGCAGAACATGGGGGAGGATCCATTGTTGTTGCTAACCGCAC CAAAGCTTTGAGTTGGGAAACTTTCAGGTTGTGGAGGGTCAATGAATCAGCCTTCAATTTCAGAGTGTCTAACAAGCAGT TTGTGGGATTGGGAAATCAAGCTGGAGCAAACAAATTAGTGGCTGGTTCAGACTTACCTGGCAACATGGAAACATTTCAG ATTGTGAGAAATGATGGTGATCCAAAAAAGATTCGCATCAGAGCACCAACTGGTCTGTTTTTACAGGCCATATCAGAGAC TCTAGTGACTGCAGATTATGAAGGATCCAGCTGGGAGGATAATGACCCTTCAGTCTTCAAAATGATAATTTTGAATCACA CCATATTAAAAGGCGAATACCAACTTACAAATGGTTATGGCCCAGACAGAGCTCCAACAATCATGCAGGATCACTGGAAT ACATATATCACTGAAGATGATTTCAGATTCATATCAACAAATGGCTTAAATGCTGTTAGAATTCCAGTTGGGTGGTGGAT AGCTCAAGACCCAACACCACCAAAGCCATTTGTAGGAGGATCCTTGGAAATACTTGACAATGCATTCACATGGGCACAAA AGTATGGATTGAAGGTAATTGTGGACCTGCATGCTGTTCCAGGTTCACAAAATGGACAACCTCACAGTGCAACAAGAGAT GGATATAGAGAATGGGGAGATTCATACATACCTGATACTGTGGCAACCATAGATTTCCTAGCTGAAAGATATGCTGACAG TGAAACACTACTTGCAATAGAGCTGATGAATGAGCCTCAAGGCGTTAATTTGCAAAGCCTTAAAAAGTATTACCAAGCAG GTTATGAAGCAGTAAGAAACCACTCATTGAGTGCTTATGTGATCATGTCTAACCCTCTGGATAGAGATTCAAGAGTGCTC CTGCAATTTGCTGGAGCTTTCAGTGGAGTAGTCATTGATGTGCATTACTACAATTTCTTTTCGGATAAATTCTCCAAAAT GAATGTGCAGCAGAACATCGATTATATTAAAAAATACAGAGCTTCAGATCTTAGCTCTCTTACCACATCTTATGGACCCC TCGTATTTGTAGGGGAGTGGAGTGGTGCCTGGAAAGTGCAGAATGCATCAAAGAAAGATTACCAACAATTTTTGCAGATT CAAAAGGAGGTATACTCTCATGCCACGTTTGGATGGGCTTATTGGGCGTACAAATGTGACTCTAACTACTGGAGCCTCAA GTGGATGATTGACAACAATTATGTCAAGTTTTAG
Download CDS Sequence

Protein sequence (LotjaGi6g1v0053600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSHHSTVQALCNKMGNQFFYTNLLFIFYISCHYYVSVAQTENSTLSIKAVNLGNWLVIEGAMKPSLFDGITNKDLLDGTQ VQFMSAKLQKYLCAEHGGGSIVVANRTKALSWETFRLWRVNESAFNFRVSNKQFVGLGNQAGANKLVAGSDLPGNMETFQ IVRNDGDPKKIRIRAPTGLFLQAISETLVTADYEGSSWEDNDPSVFKMIILNHTILKGEYQLTNGYGPDRAPTIMQDHWN TYITEDDFRFISTNGLNAVRIPVGWWIAQDPTPPKPFVGGSLEILDNAFTWAQKYGLKVIVDLHAVPGSQNGQPHSATRD GYREWGDSYIPDTVATIDFLAERYADSETLLAIELMNEPQGVNLQSLKKYYQAGYEAVRNHSLSAYVIMSNPLDRDSRVL LQFAGAFSGVVIDVHYYNFFSDKFSKMNVQQNIDYIKKYRASDLSSLTTSYGPLVFVGEWSGAWKVQNASKKDYQQFLQI QKEVYSHATFGWAYWAYKCDSNYWSLKWMIDNNYVKF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 17 17 - –
PANTHER
PTHR10551:SF26
14 516 503 6.5E-299 –
PANTHER
PTHR10551
14 516 503 6.5E-299
IPR010431
Phobius
TRANSMEMBRANE
18 35 18 - –
TMHMM
TMhelix
19 38 20 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
36 517 482 - –
SUPERFAMILY
SSF51445
44 515 472 2.85E-85
IPR017853
Gene3D
G3DSA:2.80.10.50
69 201 133 6.7E-14 –
SUPERFAMILY
SSF50405
79 196 118 5.63E-17
IPR008999
Gene3D
G3DSA:3.20.20.80
202 516 315 1.6E-81 –
Pfam
PF00150
237 497 261 2.3E-27
IPR001547

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004553
Molecular function Hydrolase activity, hydrolyzing O-glycosyl compounds Catalysis of the hydrolysis of any O-glycosyl bond.
Subterm of
GO:0005975
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Subterm of
GO:0007015
Biological process Actin filament organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments. Includes processes that control the spatial distribution of actin filaments, such as organizing filaments into meshworks, bundles, or other structures, as by cross-linking.
Subterm of
Part of
GO:0051015
Molecular function Actin filament binding Interacting selectively and non-covalently with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0053600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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