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LotjaGi6g1v0055300.2

Overview

Field Value
Gene ID LotjaGi6g1v0055300
Transcript ID LotjaGi6g1v0055300.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Glutamine synthetase; TAIR: AT5G37600.1 hypothetical protein; Swiss-Prot: sp|Q42899|GLNA1_LOTJA Glutamine synthetase cytosolic isozyme; TrEMBL-Plants: tr|Q84L17|Q84L17_9FABA Glutamine synthetase; Found in the gene: LotjaGi6g1v0055300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:9968134..9972503) extracted from Lotus japonicus Gifu genome v1.2.

GTCATCTGTAAAAAGACCCCACCAACCATTTTCCAATTAGAATCCACTCAATCCAGCTAGGCGAAGCCACTATAAAAGCT TTACCGGAGTTCACGTTTTCCTCAATATATTGAATCTGACGAGGATTCGAAGAGAAAGAGAGAGAAAGAAGAAGAAGAAG AAGAAGAGTCTTCGTTTTTGAAGATGTCGCTGCTTTCAGATCTCATCAACCTCAACCTCTCTGAAACCACAGACAAGATT ATCGCTGAGTACATATGGTTAGTCTCTCTCTCAAAGACTCGTTGTTGTTGTTGTTGTTTTTGTTCTGTACGTACAAGCAA ACATAGCATGGATTTTACGTGTGTTGGAACGTTTTTGTTGAATGATTATCATGATGATGATGTCTTTTTGTGATTGATTT TGTTCTTTTGATTCATCACTCTGTTTTGTTGATATGAGAGTCTTGAAATTCATACTATCTCACTATTATGAGTATAATCA CATGAGAAATCACTGATTTCCTCTGTTTTGACTCTGGCTTTTGGTGGTGTTTATGGTTTGATTTCAGTATTTTTTCAATC AAAAGGCTACTTTGCTTGTTTGTATGCAATAAATTGAAAAAAGGAAGACCCTTTTTCCCTTTTTTGTTTTTTGCCTGTTA GCTGTTTGCTTTATATCCAATACTACTCAATCCCAAATGATTTTTTTAGCTTCTTGTACCTAACTTTTTTATATCAGATT TTTCTCTCTTGATTAATTCTAACTTGCTTTACTTTCACTATGGTAGGATTGGTGGATCAGGTTTGGACATGAGGAGCAAA GCAAGGGTAGTTATTTGATTCACTACTTGTAGCAAACTAGAAAATAAGTGTTTTTTTTTTTCATTTTGACTAATGGGACC CTATAATGTTTTTGGTGTATAGACCCTCCCAGGACCAGTGAGCGACCCTTCACAACTGCCCAAGTGGAATTATGATGGTT CCAGCACAGGTCAAGCTCCTGGAGAAGATAGTGAAGTGATCTTATAGTATGACTCTTAAATTTTAATCTTTTTTTAGTTT TCCTCTTAACCTGTACAAGTATGTATGTGAATCTTTGTTTTCCATTTTCTTGGATATTGAATTCTGTGCTTATTTGGGCT TGTTTCAATACAGCCCACAGGCCATTTTCAGAGATCCATTCAGAAGGGGCAGCAATATCCTGGTGAGATTTTTGGTCTAA TGTGCCATCTCTGTTTAATACAACCTGTAGCATGTTTAGTTTTGGAATTTCTTCCGTCAGAGAATTCCTAAATTTACACC GTCATAGAATCTGACATGTTAGATCAAGATCAGAGTTCAAATATATGAGCCGACTGTTCTTGATCAAACAGTTAAAATTT ACTTTACTAAAATGTAGGATTGCCCAAACTGCAAGAAGCTGAAATCCTTAAAATCATTTCTGATTAGAAGCTATTGAGTA TTGGCTTCTAAGTGTCTTGGATTATGAGCAAATCGCGAAACCAAACATGTACTTTGGTTTTCCTCATGTTTATGCATGTG AACCTTTTTACATTGTGTAATCCTATTTTGTTTTTGAAACCCAATTTCTTTTAGGTTATCTGTGATGCATACACTCCTGC TGGAGAACCCATTCCCACTAACAAGAGACATGCTGCTGCCAAGGTTTTCAGCCATCCTGATGTTGTAGCTGAAGTACCCT GGTATTTATCTTTTGTTGCTTCATTGCTGATTGTAATAACCTTTTTGCCACTAGTTTCTGCTTTCATGACTAAGAACTGC TTTGTGATTGTGTTATTAGGTATGGTATTGAGCAGGAATATACCTTGTTGCAGAAAGAGGTCAACTGGCCTGTTGGGTGG CCTATTGGTGGTTTCCCTGGACCACAGGTGAAAACTCATATTCACAGTTTCACCTTTGTTCTTATTTTTTTAACAGTTTT GTTACTTTACCCATACAAACTCATGTGGTCCATTTCACACATCTACCAAAGCAAACAGTCTGGTTTTTTTTATTGTATCA TCATATGTGGATGAGTTGTCTTTTGCCACATTTGGGGTGTTAGTGCATATTTATAAATCATTCTATAATCAATTTTTGTA TTTTATGGTTTTTAGAATTGATTATGTAAAAAGAGAAGTCGATCCAAACATGTTACTAGCATCAAATTTTACTCATATTG AGACTCTGGTTAGTAGCCACTTAAAAATATCAGTACATATCACTTAACCTGAGTTGTTTCAATTTTGTTTGCCCCATAAC ATTTTTTATGATTGATGATGACGATAAAATCCTCTTTTTCTACAAAGTGAGATTGGCTATATGAATCGCTTGACCTAAGA TACACCTTGGTTTTACCTTGGTTGCCGCAAGTCTAACAAAATCCTCCATCTTTTCCCGGGCTTGAGACCGGCTAACCATC AGCACAGGGGTAGATTTTTTTATTTTTTATGATAGATGAGATGACTAACCCAATTTAAGCTTTTCTTTTGAGTGATTTTC TTCAAGAGTCATTGTTTTCTTTTGTTATAGCTTACATGCATTCAATTTTATTTGGAAATAACATCTTTCTTTTTCTTACT TGATGAGCAGGGACCATACTACTGTGGTATTGGAGCTGATAAGGCTTTTGGCCGTGATATTGTGGACGCACATTACAAAG CCTGCCTTTATGCCGGTGTGAACATCAGTGGAATCAATGGAGAAGTGATGCCTGGCCAGGTAAGTTGGAACAGCTTAGCA CTTAGTTTTGTGCTCATAATTATTTACCCGCTAGCAACACTCACTTTCCAACACTTACTTATTGGTTCGTTGAAATTTAT ATAGGGCCCACTAAACATATGGGTCTGGCGTCCAAATTTATGGGGCTCACTTAAATTTCAATTAATCTAAGTGTTGGAAA AGATGATATTACAGTGAGTGTTACTAGCACTCGTCTTACCCTACCCTAGTATTCTAATTTTTACTTTTGTTACAAATATT TTTTAATCAACACATACTTGTTGCAGTGGGAATTCCAAGTTGGCCCTTCAGTAGGTATCTCAGCTGGTGATGAGGTGTGG GTTGCTCGTTACATTTTGGAGGTAGGTGGCACATGACTACTGCTATTGTCAGCATCACCTATTTAAACTAATTGTATGAT TCTCCACCTAACTTTCTTTTGTTTCTGTTTAAACAGAGAATCACTGAGATTGCTGGGGTGGTCCTTTCCTTTGACCCCAA GCCAATTAAGGTTGACATTTCTTCCACCTTTTAACATCAAGTTACATTTTTTCCAACCCCTTTACTCTCTCATTGGCTGA ATCTATCAGAAAGTCTTAAGGAATTTAAAATTTTGAAAAATTAAATTGATGTGTTCCCCTCCACAAATACATAACCTTAT TAAAATCGATTATTCAAACACACTTTGTTTTTGCTGTTGAATTGGTGTTGACTTGGGTTATTATTACAAAACCAGGGTGA TTGGAATGGTGCTGGTGCTCACACAAATTACAGGTAATCTTTGTTACTTTTTAACAAAAAGACCAAATTTAACCCTTTTT TGCTTTCATGCTTGACAAGTGCTTAATAATGTTCCAGCACTAAGACCATGAGAGAGGATGGTGGCTATGAAGTGATCAAG AAAGCAATTGATAAGTTGGGGTTGAGACACAAGGAGCACATTGCTGCTTATGGAGAAGGCAACGAGCGTCGTTTGACAGG AAGACACGAGACAGCTGACATCAACACTTTCTTATGGGTAAGCAAGAAAATGGAATTTTCGATTCCTTGCGGGTAAACAT TGATTTTCTCATTGTTGACTTAATGCCGAGTTTTCACGGTTTGTGTTATTTGACTTGTGTAGGGAGTTGCAAACCGTGGT GCTTCTATTAGAGTTGGGAGGGACACAGAGAAAGAAGGGAAGGGTTACTTTGAGGACAGAAGGCCTGCATCTAACATGGA CCCATATGTTGTCACTTCCATGATTGCAGACACAACCATTCTCTGGAAACCATGAGCCAATGTTACAGGACCATTTGCTG CATGCCTATGAAAGTCATGGTTGTTTCTATTTCCTGATTAGGATTTGGTCATTGGTTTTTATTGTCTTTTCCATAATTTT ACTTTTGTGTTCTTGTTATGGCTGGCACATGGTGTGAGGCCTTGTTTGTTGGTACCAACTACCAAGGCTAGTTCATTGCT TGCTATTTCTCTCCCTCATTTTCTGATTTAAGCATCAAAATAATAATGTTATGGTTATCAATGAAAAAGATGATTGTCGA GTATATGAATAATATATGAAATTGACATGTTCATGGTTTGGTGTTGATATTTTTGTTGATCGAGGATTCATTGAATAGAG TCAGTTCGGATGATTGTTAGAAAGTATGAAAACAAGAAAATAATACATTT
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0055300.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCGCTGCTTTCAGATCTCATCAACCTCAACCTCTCTGAAACCACAGACAAGATTATCGCTGAGTACATATGGATTGG TGGATCAGGTTTGGACATGAGGAGCAAAGCAAGGACCCTCCCAGGACCAGTGAGCGACCCTTCACAACTGCCCAAGTGGA ATTATGATGGTTCCAGCACAGGTCAAGCTCCTGGAGAAGATAGTGAAGTGATCTTATACCCACAGGCCATTTTCAGAGAT CCATTCAGAAGGGGCAGCAATATCCTGGTTATCTGTGATGCATACACTCCTGCTGGAGAACCCATTCCCACTAACAAGAG ACATGCTGCTGCCAAGGTTTTCAGCCATCCTGATGTTGTAGCTGAAGTACCCTGGTATGGTATTGAGCAGGAATATACCT TGTTGCAGAAAGAGGTCAACTGGCCTGTTGGGTGGCCTATTGGTGGTTTCCCTGGACCACAGGGACCATACTACTGTGGT ATTGGAGCTGATAAGGCTTTTGGCCGTGATATTGTGGACGCACATTACAAAGCCTGCCTTTATGCCGGTGTGAACATCAG TGGAATCAATGGAGAAGTGATGCCTGGCCAGTGGGAATTCCAAGTTGGCCCTTCAGTAGGTATCTCAGCTGGTGATGAGG TGTGGGTTGCTCGTTACATTTTGGAGAGAATCACTGAGATTGCTGGGGTGGTCCTTTCCTTTGACCCCAAGCCAATTAAG GGTGATTGGAATGGTGCTGGTGCTCACACAAATTACAGCACTAAGACCATGAGAGAGGATGGTGGCTATGAAGTGATCAA GAAAGCAATTGATAAGTTGGGGTTGAGACACAAGGAGCACATTGCTGCTTATGGAGAAGGCAACGAGCGTCGTTTGACAG GAAGACACGAGACAGCTGACATCAACACTTTCTTATGGGGAGTTGCAAACCGTGGTGCTTCTATTAGAGTTGGGAGGGAC ACAGAGAAAGAAGGGAAGGGTTACTTTGAGGACAGAAGGCCTGCATCTAACATGGACCCATATGTTGTCACTTCCATGAT TGCAGACACAACCATTCTCTGGAAACCATGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0055300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSLLSDLINLNLSETTDKIIAEYIWIGGSGLDMRSKARTLPGPVSDPSQLPKWNYDGSSTGQAPGEDSEVILYPQAIFRD PFRRGSNILVICDAYTPAGEPIPTNKRHAAAKVFSHPDVVAEVPWYGIEQEYTLLQKEVNWPVGWPIGGFPGPQGPYYCG IGADKAFGRDIVDAHYKACLYAGVNISGINGEVMPGQWEFQVGPSVGISAGDEVWVARYILERITEIAGVVLSFDPKPIK GDWNGAGAHTNYSTKTMREDGGYEVIKKAIDKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRD TEKEGKGYFEDRRPASNMDPYVVTSMIADTTILWKP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR20852
1 356 356 4.0E-248 –
Gene3D
G3DSA:3.10.20.70
1 103 103 2.7E-45
IPR036651
PANTHER
PTHR20852:SF83
1 356 356 4.0E-248 –
SUPERFAMILY
SSF54368
12 102 91 9.81E-18
IPR036651
Pfam
PF03951
23 97 75 4.5E-10
IPR008147
MobiDBLite
mobidb-lite
37 64 28 - –
ProSitePatterns
PS00180
55 72 18 -
IPR027302
SMART
SM01230
103 351 249 2.1E-58
IPR008146
SUPERFAMILY
SSF55931
103 351 249 3.83E-68
IPR014746
Gene3D
G3DSA:3.30.590.40
104 356 253 1.0E-133 –
Pfam
PF00120
126 346 221 2.4E-14
IPR008146
ProSitePatterns
PS00181
237 253 17 -
IPR027303

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004356
Molecular function Glutamate-ammonia ligase activity Catalysis of the reaction: L-glutamate + ATP + NH(3) = L-glutamine + ADP + 2 H(+) + phosphate.
Subterm of
GO:0006542
Biological process Glutamine biosynthetic process The chemical reactions and pathways resulting in the formation of glutamine, 2-amino-4-carbamoylbutanoic acid.
Subterm of
GO:0006807
Biological process Nitrogen compound metabolic process The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0055300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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