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LotjaGi6g1v0058600.2

Overview

Field Value
Gene ID LotjaGi6g1v0058600
Transcript ID LotjaGi6g1v0058600.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description GAI-like protein 1; TAIR: AT2G01570.1 GRAS family transcription factor family protein; Swiss-Prot: sp|Q84TQ7|GAI_GOSHI DELLA protein GAI; TrEMBL-Plants: tr|A0A0L9U8W1|A0A0L9U8W1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0058600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:10704665..10706603) extracted from Lotus japonicus Gifu genome v1.2.

ATGAAGAGAGATCACCAAGATAGCTGCAAAGGAGGGAACACTGGGAGTGTGAGGAACAGTGTTGGTGCTGTGAAAGGTGA ATGCTCGTCAATGCCGACCGGCAAGGCCAAGATGTGGGAGGAAGAACACGGCGGCGCCGCCGGAGTTGATGAGCTTCTGG CGGCTTTAGGTTACAAGGTGCGTTCCTCTGACATGGCTGATGTTGCCCAGAAGATGGAACAGCTTGAGATGGTGATGGGT ATTGCACAGGAAGATGGAATCTCACACCTTGCTTCTGATACCGTTCACTACGACCCTACCGATCTGTATTCATGGGTTCA AACCATACTCACCGAGCTCAACCCTCCTCCAACCACCACCACCACCTTGCTTGATCCATCTTCTCTCTTGGAAAATCACC AAATCAACGACCCTTTAAACCCTTCTTCAATTCTTCTCAACAACAACGCTTCAAGGGTCTTCAACGATGATTCTGAATAC GATCTCAGAGCTATCCCCGGCATCGCCGCATACCCACCAACCCAAGACAACAGCAACGACGAAACCGAACCCAAGCGATT GAAGACATGGTCAATCAAATCTGATTCAGCTCTTTCACCGCCGGCGCAAGTTCCAGAGACGGCGAGGCCGGTGGTTCTGG TGGACACGCAGGAAACAGGGGTTCGTCTGGTTCACGCGCTGATGGCCTGCGCTGAAGCAGTTCAGAAGGAGAATCACAAG CTCGCGGACACGCTCGTGAAGCACATAGGGGTGCTCGCTGCGTCGCAAGCCGGCGCGATGAGGAAGGTTGCTTCCTATTT CGCACAAGCTCTTGCTCGGAGAATCTATGGAATCTTCCCTGACACCGTCGATTCCTCCCTCAACGACGTGCTTCACATGC ACTTCTACGAGTCCTGTCCCTACCTGAAGTTCGCACACTTCACCGCCAACCAGGCCATTCTTGAGGCTTTCGCCACCGCC GGAAGAGTCCACGTCGTCGATTTCGGCCTGAAACAGGGGATGCAGTGGCCGGCGCTCATGCAGGCACTCGCATTGCGCCC CGGCGGACCACCCACTTTCCGCCTCACCGGAATCGGACCACCGCAGCCGGACAACTCCGACGCCTTGCAGCAGGTGGGTT GGAAGCTCGCTCAGCTTGCTCAAACCATCGGCGTCCAGTTCGAGTTCCGCGGCTTCGTCTGCAACAGCCTCGCCGATCTC GACCCGAACATGCTCGAGATCCGACCCGGGGAAGCCGTCGCTGTCAACTCAGTCTTCGAGCTCCACCGCATGTTAGCCCG ACCCGGATCCATTGACAAGGTCATGGGCACAATCAAGAAGCTAAACCCCAAGATCGTGACCATCGTTGAACAGGAAGCGA ACCACAACGGACCGGTTTTCGTGGACCGGTTCACGGAGGCGCTGCATTACTATTCAAGCCTGTTTGATTCTCTGGAAGGC GCGGCGTCAACCGGGTCGGATTCGTCGGGTCAGGACGTCGTGATGACCGAGGTTTACCTAGGGGAGCAGATATGCAACGT GGTGGCGTGCGAAGGGGTGGACCGGGTCGAGCGGCACGAGACCCTGGTCCAATGGAGGACCAGGATGGGCTCGGCCGGAT TCGACCCGGTCCATCTCGGGTCGAACGCCTTCAAGCAAGCGAGCATGTTGCTCGCATTGTTTGCCGGCGGTGACGGTTAC AGGGTGGAGGAGAACAATGGGTGCCTCATGCTTGGGTGGCACACTAGGCCACTCATTGCCACCTCCGCGTGGAAGCTTCC ACAACCCAGTGAGTCGTAGTGAGTTGACTCGGTTTGGGCCCTACTGAGTTAGGAGATGATAAGAAGAAAGAAATGACTCT CCGATGTAGATTTTAATTGGGATGATTATTATGAGAATGGCCCAATGGGATCAATGGTTTGATTGATGTTGAATGAGTGA GTCAGTAGCTACTGAGTGA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0058600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAGAGAGATCACCAAGATAGCTGCAAAGGAGGGAACACTGGGAGTGTGAGGAACAGTGTTGGTGCTGTGAAAGGTGA ATGCTCGTCAATGCCGACCGGCAAGGCCAAGATGTGGGAGGAAGAACACGGCGGCGCCGCCGGAGTTGATGAGCTTCTGG CGGCTTTAGGTTACAAGGTGCGTTCCTCTGACATGGCTGATGTTGCCCAGAAGATGGAACAGCTTGAGATGGTGATGGGT ATTGCACAGGAAGATGGAATCTCACACCTTGCTTCTGATACCGTTCACTACGACCCTACCGATCTGTATTCATGGGTTCA AACCATACTCACCGAGCTCAACCCTCCTCCAACCACCACCACCACCTTGCTTGATCCATCTTCTCTCTTGGAAAATCACC AAATCAACGACCCTTTAAACCCTTCTTCAATTCTTCTCAACAACAACGCTTCAAGGGTCTTCAACGATGATTCTGAATAC GATCTCAGAGCTATCCCCGGCATCGCCGCATACCCACCAACCCAAGACAACAGCAACGACGAAACCGAACCCAAGCGATT GAAGACATGGTCAATCAAATCTGATTCAGCTCTTTCACCGCCGGCGCAAGTTCCAGAGACGGCGAGGCCGGTGGTTCTGG TGGACACGCAGGAAACAGGGGTTCGTCTGGTTCACGCGCTGATGGCCTGCGCTGAAGCAGTTCAGAAGGAGAATCACAAG CTCGCGGACACGCTCGTGAAGCACATAGGGGTGCTCGCTGCGTCGCAAGCCGGCGCGATGAGGAAGGTTGCTTCCTATTT CGCACAAGCTCTTGCTCGGAGAATCTATGGAATCTTCCCTGACACCGTCGATTCCTCCCTCAACGACGTGCTTCACATGC ACTTCTACGAGTCCTGTCCCTACCTGAAGTTCGCACACTTCACCGCCAACCAGGCCATTCTTGAGGCTTTCGCCACCGCC GGAAGAGTCCACGTCGTCGATTTCGGCCTGAAACAGGGGATGCAGTGGCCGGCGCTCATGCAGGCACTCGCATTGCGCCC CGGCGGACCACCCACTTTCCGCCTCACCGGAATCGGACCACCGCAGCCGGACAACTCCGACGCCTTGCAGCAGGTGGGTT GGAAGCTCGCTCAGCTTGCTCAAACCATCGGCGTCCAGTTCGAGTTCCGCGGCTTCGTCTGCAACAGCCTCGCCGATCTC GACCCGAACATGCTCGAGATCCGACCCGGGGAAGCCGTCGCTGTCAACTCAGTCTTCGAGCTCCACCGCATGTTAGCCCG ACCCGGATCCATTGACAAGGTCATGGGCACAATCAAGAAGCTAAACCCCAAGATCGTGACCATCGTTGAACAGGAAGCGA ACCACAACGGACCGGTTTTCGTGGACCGGTTCACGGAGGCGCTGCATTACTATTCAAGCCTGTTTGATTCTCTGGAAGGC GCGGCGTCAACCGGGTCGGATTCGTCGGGTCAGGACGTCGTGATGACCGAGGTTTACCTAGGGGAGCAGATATGCAACGT GGTGGCGTGCGAAGGGGTGGACCGGGTCGAGCGGCACGAGACCCTGGTCCAATGGAGGACCAGGATGGGCTCGGCCGGAT TCGACCCGGTCCATCTCGGGTCGAACGCCTTCAAGCAAGCGAGCATGTTGCTCGCATTGTTTGCCGGCGGTGACGGTTAC AGGGTGGAGGAGAACAATGGGTGCCTCATGCTTGGGTGGCACACTAGGCCACTCATTGCCACCTCCGCGTGGAAGCTTCC ACAACCCAGTGATGAGTCAGTAGCTACTGAGTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0058600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKRDHQDSCKGGNTGSVRNSVGAVKGECSSMPTGKAKMWEEEHGGAAGVDELLAALGYKVRSSDMADVAQKMEQLEMVMG IAQEDGISHLASDTVHYDPTDLYSWVQTILTELNPPPTTTTTLLDPSSLLENHQINDPLNPSSILLNNNASRVFNDDSEY DLRAIPGIAAYPPTQDNSNDETEPKRLKTWSIKSDSALSPPAQVPETARPVVLVDTQETGVRLVHALMACAEAVQKENHK LADTLVKHIGVLAASQAGAMRKVASYFAQALARRIYGIFPDTVDSSLNDVLHMHFYESCPYLKFAHFTANQAILEAFATA GRVHVVDFGLKQGMQWPALMQALALRPGGPPTFRLTGIGPPQPDNSDALQQVGWKLAQLAQTIGVQFEFRGFVCNSLADL DPNMLEIRPGEAVAVNSVFELHRMLARPGSIDKVMGTIKKLNPKIVTIVEQEANHNGPVFVDRFTEALHYYSSLFDSLEG AASTGSDSSGQDVVMTEVYLGEQICNVVACEGVDRVERHETLVQWRTRMGSAGFDPVHLGSNAFKQASMLLALFAGGDGY RVEENNGCLMLGWHTRPLIATSAWKLPQPSDESVATE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 31 31 - –
Gene3D
G3DSA:1.10.10.1290
48 113 66 2.3E-34
IPR038088
SMART
SM01129
50 123 74 7.1E-34 –
Pfam
PF12041
50 117 68 9.1E-37
IPR021914
PANTHER
PTHR31636
184 587 404 2.2E-191 –
PANTHER
PTHR31636:SF190
184 587 404 2.2E-191
IPR030006
ProSiteProfiles
PS50985
214 585 372 106.107
IPR005202
Pfam
PF03514
223 585 363 5.5E-139
IPR005202

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003712
Molecular function Transcription coregulator activity A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to either activate or repress the transcription of specific genes. Coregulators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class modulates interactions of DNA-binding transcription factor with other transcription coregulators.
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0058600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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