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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0058600 |
| Transcript ID | LotjaGi6g1v0058600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GAI-like protein 1; TAIR: AT3G03450.1 RGA-like 2; Swiss-Prot: sp|Q84TQ7|GAI_GOSHI DELLA protein GAI; TrEMBL-Plants: tr|A0A0L9U8W1|A0A0L9U8W1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0058600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:10704691..10706451) extracted from Lotus japonicus Gifu genome v1.2.
CAAAGGAGGGAACACTGGGAGTGTGAGGAACAGTGTTGGTGCTGTGAAAGGTGAATGCTCGTCAATGCCGACCGGCAAGG CCAAGATGTGGGAGGAAGAACACGGCGGCGCCGCCGGAGTTGATGAGCTTCTGGCGGCTTTAGGTTACAAGGTGCGTTCC TCTGACATGGCTGATGTTGCCCAGAAGATGGAACAGCTTGAGATGGTGATGGGTATTGCACAGGAAGATGGAATCTCACA CCTTGCTTCTGATACCGTTCACTACGACCCTACCGATCTGTATTCATGGGTTCAAACCATACTCACCGAGCTCAACCCTC CTCCAACCACCACCACCACCTTGCTTGATCCATCTTCTCTCTTGGAAAATCACCAAATCAACGACCCTTTAAACCCTTCT TCAATTCTTCTCAACAACAACGCTTCAAGGGTCTTCAACGATGATTCTGAATACGATCTCAGAGCTATCCCCGGCATCGC CGCATACCCACCAACCCAAGACAACAGCAACGACGAAACCGAACCCAAGCGATTGAAGACATGGTCAATCAAATCTGATT CAGCTCTTTCACCGCCGGCGCAAGTTCCAGAGACGGCGAGGCCGGTGGTTCTGGTGGACACGCAGGAAACAGGGGTTCGT CTGGTTCACGCGCTGATGGCCTGCGCTGAAGCAGTTCAGAAGGAGAATCACAAGCTCGCGGACACGCTCGTGAAGCACAT AGGGGTGCTCGCTGCGTCGCAAGCCGGCGCGATGAGGAAGGTTGCTTCCTATTTCGCACAAGCTCTTGCTCGGAGAATCT ATGGAATCTTCCCTGACACCGTCGATTCCTCCCTCAACGACGTGCTTCACATGCACTTCTACGAGTCCTGTCCCTACCTG AAGTTCGCACACTTCACCGCCAACCAGGCCATTCTTGAGGCTTTCGCCACCGCCGGAAGAGTCCACGTCGTCGATTTCGG CCTGAAACAGGGGATGCAGTGGCCGGCGCTCATGCAGGCACTCGCATTGCGCCCCGGCGGACCACCCACTTTCCGCCTCA CCGGAATCGGACCACCGCAGCCGGACAACTCCGACGCCTTGCAGCAGGTGGGTTGGAAGCTCGCTCAGCTTGCTCAAACC ATCGGCGTCCAGTTCGAGTTCCGCGGCTTCGTCTGCAACAGCCTCGCCGATCTCGACCCGAACATGCTCGAGATCCGACC CGGGGAAGCCGTCGCTGTCAACTCAGTCTTCGAGCTCCACCGCATGTTAGCCCGACCCGGATCCATTGACAAGGTCATGG GCACAATCAAGAAGCTAAACCCCAAGATCGTGACCATCGTTGAACAGGAAGCGAACCACAACGGACCGGTTTTCGTGGAC CGGTTCACGGAGGCGCTGCATTACTATTCAAGCCTGTTTGATTCTCTGGAAGGCGCGGCGTCAACCGGGTCGGATTCGTC GGGTCAGGACGTCGTGATGACCGAGGTTTACCTAGGGGAGCAGATATGCAACGTGGTGGCGTGCGAAGGGGTGGACCGGG TCGAGCGGCACGAGACCCTGGTCCAATGGAGGACCAGGATGGGCTCGGCCGGATTCGACCCGGTCCATCTCGGGTCGAAC GCCTTCAAGCAAGCGAGCATGTTGCTCGCATTGTTTGCCGGCGGTGACGGTTACAGGGTGGAGGAGAACAATGGGTGCCT CATGCTTGGGTGGCACACTAGGCCACTCATTGCCACCTCCGCGTGGAAGCTTCCACAACCCAGTGAGTCGTAGTGAGTTG A
CDS sequence (LotjaGi6g1v0058600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCTCACACCTTGCTTCTGATACCGTTCACTACGACCCTACCGATCTGTATTCATGGGTTCAAACCATACTCACC GAGCTCAACCCTCCTCCAACCACCACCACCACCTTACCCTTCTTCAATTCTTCTCAACAACAACGCTTCAAGGGTCTTCA ACGATGATTCTGAATACGATCTCAGAGCTATCCCCGGCATCGCCGCATACCCACCAACCCAAGACAACAGCAACGACGAA ACCGAACCCAAGCGATTGAAGACATGGTCAATCAAATCTGATTCAGCTCTTTCACCGCCGGCGCAAGTTCCAGAGACGGC GAGGCCGGTGGTTCTGGTGGACACGCAGGAAACAGGGGTTCGTCTGGTTCACGCGCTGATGGCCTGCGCTGAAGCAGTTC AGAAGGAGAATCACAAGCTCGCGGACACGCTCGTGAAGCACATAGGGGTGCTCGCTGCGTCGCAAGCCGGCGCGATGAGG AAGGTTGCTTCCTATTTCGCACAAGCTCTTGCTCGGAGAATCTATGGAATCTTCCCTGACACCGTCGATTCCTCCCTCAA CGACGTGCTTCACATGCACTTCTACGAGTCCTGTCCCTACCTGAAGTTCGCACACTTCACCGCCAACCAGGCCATTCTTG AGGCTTTCGCCACCGCCGGAAGAGTCCACGTCGTCGATTTCGGCCTGAAACAGGGGATGCAGTGGCCGGCGCTCATGCAG GCACTCGCATTGCGCCCCGGCGGACCACCCACTTTCCGCCTCACCGGAATCGGACCACCGCAGCCGGACAACTCCGACGC CTTGCAGCAGGTGGGTTGGAAGCTCGCTCAGCTTGCTCAAACCATCGGCGTCCAGTTCGAGTTCCGCGGCTTCGTCTGCA ACAGCCTCGCCGATCTCGACCCGAACATGCTCGAGATCCGACCCGGGGAAGCCGTCGCTGTCAACTCAGTCTTCGAGCTC CACCGCATGTTAGCCCGACCCGGATCCATTGACAAGGTCATGGGCACAATCAAGAAGCTAAACCCCAAGATCGTGACCAT CGTTGAACAGGAAGCGAACCACAACGGACCGGTTTTCGTGGACCGGTTCACGGAGGCGCTGCATTACTATTCAAGCCTGT TTGATTCTCTGGAAGGCGCGGCGTCAACCGGGTCGGATTCGTCGGGTCAGGACGTCGTGATGACCGAGGTTTACCTAGGG GAGCAGATATGCAACGTGGTGGCGTGCGAAGGGGTGGACCGGGTCGAGCGGCACGAGACCCTGGTCCAATGGAGGACCAG GATGGGCTCGGCCGGATTCGACCCGGTCCATCTCGGGTCGAACGCCTTCAAGCAAGCGAGCATGTTGCTCGCATTGTTTG CCGGCGGTGACGGTTACAGGGTGGAGGAGAACAATGGGTGCCTCATGCTTGGGTGGCACACTAGGCCACTCATTGCCACC TCCGCGTGGAAGCTTCCACAACCCAGTGAGTCGTAG
Protein sequence (LotjaGi6g1v0058600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESHTLLLIPFTTTLPICIHGFKPYSPSSTLLQPPPPPYPSSILLNNNASRVFNDDSEYDLRAIPGIAAYPPTQDNSNDE TEPKRLKTWSIKSDSALSPPAQVPETARPVVLVDTQETGVRLVHALMACAEAVQKENHKLADTLVKHIGVLAASQAGAMR KVASYFAQALARRIYGIFPDTVDSSLNDVLHMHFYESCPYLKFAHFTANQAILEAFATAGRVHVVDFGLKQGMQWPALMQ ALALRPGGPPTFRLTGIGPPQPDNSDALQQVGWKLAQLAQTIGVQFEFRGFVCNSLADLDPNMLEIRPGEAVAVNSVFEL HRMLARPGSIDKVMGTIKKLNPKIVTIVEQEANHNGPVFVDRFTEALHYYSSLFDSLEGAASTGSDSSGQDVVMTEVYLG EQICNVVACEGVDRVERHETLVQWRTRMGSAGFDPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIAT SAWKLPQPSES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 84 | 486 | 403 | 4.6E-189 | – | |
| PANTHER | 84 | 486 | 403 | 4.6E-189 | ||
| ProSiteProfiles | 113 | 484 | 372 | 106.107 | ||
| Pfam | 122 | 484 | 363 | 3.0E-139 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transcription coregulator activity | A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to either activate or repress the transcription of specific genes. Coregulators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class modulates interactions of DNA-binding transcription factor with other transcription coregulators. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi6g1v0058600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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