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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0062100 |
| Transcript ID | LotjaGi6g1v0062100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Telomere binding protein; TAIR: AT3G12560.1 TRF-like 9; Swiss-Prot: sp|Q9C7B1|TRP3_ARATH Telomere repeat-binding protein 3; TrEMBL-Plants: tr|I1LMF8|I1LMF8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0062100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:11314174..11319701) extracted from Lotus japonicus Gifu genome v1.2.
CACACACTCCCTTATAGGAAAAGGCAAATCCCAATGTTTCTAATCTCTCTGCCCCATGATCTCTTTATTTCTCCCACAAA GGCTTTGCTTCACTTCCACGTGTCACAAGCAATCCATATAGGGGTTGTGTTGAGGGGTTAAGAATGGGTATAGAGAGGGT TTTGGTAGGGATGAAGGTAACCTTCTATAACAAGTAGCAATGCACTTTTACCGGCTATTCAGGTTATGTGGTCAAAACCA GGTTGGATATAAAGGGTTTAAGGCCACTATTGCGTGGTTTTTGGTTATGGTATTGGTGGGTTTTTGTCCTCTTAAAAACT CTTCTCTCTATCAACTATTCTATCTATCTATTGTTTCGTTCCATCTCACAAAACAAGAAAGAAAATAAGAGGAAAAGAAA ATAAAAAAAATTTCAATATTTTTTCAAAGAGAGAGAAAGTTGAGGAGTTTGGTTTTGTTGATTCAGTTCCTGAATTCCCT TAGATCTTGCATTTTTCGGACAATTTTCATCTGGGTTTTGTTTTGCGCACCAAAAGTTTGCACCTTTTTTCCTCTGTCGG AAAATGGCTTTCCTCGGAAATTCAGTTACTTGATCGTAATTTGGTTCCTCGGATCGTTGCTTGTTCTCGAATGTTGTTCA GGTATGTTGGTTTGAGAGGTTTTGTTGCATGTCAGAGGTTTTGAATTTCGGTTTTTTTGGTGTGATCTCATCATGGGTTC ATGGCGGGGATCAATTCTCAACTCTGCATAGTTCTTGTTGAATTTGGGTGATGCAGAGAGGGGAATTGTGGTGGTGTTTT GTGTGCAATTTGGTTTCTGACTTAAAAAGATTCATTTTTGGTTCTTGGAAAATTGTGGGGTGGAGTTCAGAATTGAGATC CGATCGTGGAAGTTAGGCTTTGTTTGTTGTGTGTGTAACTGGTTTTGGTTTGTTTCAATGTGAAAATTATGAATTTTTAA TTCTGGGGTGTGACTTTTTTTTTTTTTCATTTTAGCCTGAATTGTTGCAGTTGAAAGATCACATCAACTTTGATTATCGG AAATGGTTCAATTTTGGTTGATCTCAGAGAATTAGTACTCATAAATTGGTGCTTTGATGGTGTTGAATTTTATGATCCTT CCACCCTTAAACGTGTGTGTGTGTCTTTTTGGTTTGATCATGGAGTTACATGCGGTTATTTCATAATTGTTTCATACAGT TTCATGAAATTCATCTGAATCCATTTTATAACCGTTTTTGTAACTGCCGTGATGTGGATTCAGCTTTCAATCCCTTCCTT CTATGTGTAGTCAGTTTATTCATTGTTATGTCCAGTTCAATGAAATTGAATCTGTGAATCAAGTGGGGTAGTATTTGGAA TTGTTTTAAATCTGATCTTGATCTTTCCTTATGTATTCATTTGTGAATGCTCCTTTTGCCTTCATGCTGTACAATTGGCA AACAAAATTGTAAAGGATGTCTTAATTAATCACCTCCTATATAAATCCATATTAATTGAAATTGTCCCTGTTAATTGAAG ATTAGATCATTCAACTTGCATTCATTGGTAGTGTGTGAAGAAGAACCGCCAACTGTTTGGCGATATGTGTGTATGTGTGT GTAGTAATTGCTGATTTAAAGTAGTTGCAAATGTTTCAGTGGTAGTGTGATGTTGCATTCTCAATTTGCATAAAGCAATA AAGTGAGAATTAACTTGATATGTGGGTTTTCTTTCAATCTTTATGACAGTAAAGAGGATCTGGTGAATTGATGCTTCCGG CTATTTGACGAGCTTATAAATATATGTTTAAACTATGGTGTTCAAGAAGAAGGCAGATTATGGATTCAACGGCTTTCGAG TCCCTGTTATTCCTAAAGCTCCTAGATCTGCGAGAGTAAGTACTAGCTGCACTTATGGGAATGGTTTTATGTTCCATTTT TTGTTTTTGTTTTGAACTCTATTTAATCCCTTTAATTTTGACAATTGTTCAGAGGAGGGGTCCATTTAGAAATTCCGTTG AGGATGGTCAAGCATGTGCTTTCGACCTATTGGCATCTTTAGCTGGAAAGTTGTTACAGGAGAGTGAAAGCTCTGCTGCT AGCAATGCATCTGAAGGAAATCTTCAGCCTGCTGTTAAACCATTGACAATGGAGGGAATTTGTCAGGGAAATTGTGCAGA GAGTGTTGTTAAGAATGAGGTAGCCTCTCAAAACAGTAGTCAGAAACCTCTTCTGCATTCCAAGCCTGATTGTTTAGTAG GATATGTTTCTGTAAATAATAGTTCTGACTGTTTGGAAAAAGTCGAAACTGGTGTGAAGACTGAGGCTTTCGACCGGGAT AAAAAATATGTGCATTATTCTAATAGATTAGTGGAAATACATGAAAAATTTAAGGATTCTTGTGATGGTATAATAAAGAA TGGATTTAGACAGGGAAAAGAAGCTGGCAGTTCAGACTTTCAGGGATCAACTTTGGGTGATAAATATGGTTTGAAGGACC AATTAGATTTGTATGCTACTCCTGCACTAATTGACTCAAAAGTTAATGTTAAATATCCACGTAAATCTTTTCCCAGTGCT TCTTTTTCCAAGCTAGGGAATGGTAGTAAGTTAGAATTTAGAGATGATGACGAAAACCTTTTAAGGTGCAAAAGACTTTG CACAAAATCAAAGGCCTTTAGGTCTCCACGACGCATTGCCCACCGAAGAATCAAGAATCTGCTGTCGTCCAAATACTGGA AGGTTGCTCCAAAGCTGAAGGAATGTGATCTTCCTGTATCTGGTAAGATGCCTTTAAAAGTGTTCTACCAAATGCTTCAA CATCTGATGCCTATACTATGTCTATTTGAGTGATTGTCATTTCCACTGACAGTAATATAGAATTTGCAGATCTAGGAGTA CCTCTTTATCGGAAGAGGAAGGCTTGTTACGGATTTGAAAGATCCCAGCGCAGCACTATTGCTAAGAGGAGGAAATTCTT TGACCACGTTTCGGGGGTAACTTCTGATGGAGGATTCAGCAGTGAGAGTGTGTCTAATTCACCTATGAAAGGAGTGGATG GAGACAAACCTTGCTCATCTGCAAAACTTCTTGTCCCACAGGATTCTCATGGTAACTCATTCCCTTATGTTTATTCATTT TGCTTATCTTTATTGTTCATTACACTAAATAGTAACTTATGTGCTGTGTGTAACTTGTGAACAGTGAAATTTAGCATTAA GTCATTCAAGATACCAGAGCTTTATATTGAGGTTCCTGAAACTGCAACTGTCGGTTCACTAAAGGTATAAATGTTAATAA TGAAATGTATCGACAGCATTAGTATTTCTTTTCAGAAAAAATATTATTGTTGTTAAAGCTTCATCGATGCTTGTCATCTG TGTTTTTTCAAGCCAATGTATCTTCTACTTATCCCACATGTGACTGTCTTTCTCTGACTCTAACCTTTGCAGTGTGTATT TTTCAAATTTTTGTAGAGGTCGGTCATGGAATCTGTGATGGCTATACTCGGAGGTGGTGTGCATGTTGGTGTAATTCTTC AGGGGAAAAAAGTTAGAGAGGACAATAGAACACTTATGCAGACTGGTATATCTTGCAAAGAAAATCTCGATACCCTTAGT TTCACGTTGGAGCCCAGTTCTCTTCTAGCTTCTCCAGCTGTTTGTGTTGGTGGCGGTCCTTCTTCCCAATGCGAAACATT CGAACCTATTGGGTGAGCCAAACTTGATGACATAGTTTCTTTCCATGATCATTTGACAAAAAAAGTAAATGAATTTTGCT TATGAATCAGCACTATTCAGTTGAATTTAATAAATTGTTCATTTGATTTTTCTAGGTCCCCCGAAACTCCTGTCCTAGAT TCAGGGATTACTGGTACCTTACTTGACCCGTCCTTGCTGACAAATCCGAGCAACCTAGTTGAAAGTAACCATGAGTCCAC TTCTTCCCCCACTGACACAACAGTTGACAATATAACACCAGATTCCAGAGCGATAGTTGCCGTTCCAACTAGTGCTGAAG CATTAGCTGTGGTTCCTGCAAGTCAGAAGACCAAGCGCGCTGATTATGCACAGCGTCGGACCAGGAGGCCATTTACTGTG TATGAGGTAGAAGCACTTGTTCACGCAGTTGAAGAACTTGGAACTGGAAGGTACTACAATGTTATCAATATCAGCTTTAC CTCAAGATACACAGCAGAACAGGATTGCTTATATGTTTACATTATGTAGGTGGCGTGATGTTAAGTTGCGATCTTTTGAG AATGCAGACCACAGGACTTATGTAGACTTAAAGGTACATTTTTTTCTCTCCTTCCCTCCAGACAGTTGCTTTTAACTTTA GATATAACTTTACATGGTTAATGGCAATCTAAGTTTCTTATAATTAATTTGGATTTGGCCCTTGTCGGATCCTGTTTCCT GCTTGATTCTGAAGAGATTTTCAAGTAAGATTTGTTACCTAGGAGAAAATGATTGGCTTAATTATCCAACTTTAATTTCT GTTTCGTGGTTGTCATTGTATTGGTTTTTGTATGGCTGATGGCATAAATATTGTCCTGAGCATTATGCATATTTTCTTAA GATGATAAAGTCCCCATATATTAGCTGCATTTTAGAAATCCTTCTACAATTGATTCTGCATCTGAAATCAATTCATGAGG AGAAATTCTTATGAGTAGTTTGTCTGCCAGAATTGATTCTGAGTAAAGAGAAAATTGATTTAAACATGTCATTAGATGCT TTAGAACCTGAGTTAGGCCTAGCTCTACCCTAAAAGCTAGCTTAGAGGTGACGGTTTCTCTACCCTTTATAAGAACTCTT CTGGTCATATCTTTGTAATGCTACTGGCATTGCTTGATTGCTAAATGATGAAACCTATTGGTGTGTTGTGCAGGATAAAT GGAAGACATTAGTGCACACTGCAAGCATCTCCCCTCAACAAAGGAGAGGAGAGCCAGTACCCCAGGAGCTATTAGATAGG GTTTTGGCGGCACACTCTTACTGGTCTCAGCACCAAGCCAAGCAACATGGCAAGCCCCAAGTTGGACCTGGCACCTTGAA GATTGCAGAAGCTGCACCTGAAAGATCATGTTTGTTGAAGGTGTAGAAAGGACTACTTGTGTTGCTGACAGGAAAAGAAA AAGAAGAAGAACATAAGAAGACTCAACTTGTACATTTTGTTTCAAATTCATGTAATATTCTCACACCAAATTCTTTGCCT GCCCCAAATTGCATGCAGGTTGGCATTTGTAAATGATTTGATGCAATAAGGTTGTTAATTCCATTGTTCTTTTATTTTTT GTTAATTTCAATTTCATTTATGAATGTATCTAGAAATGTCAACACGACATGACATAGGAAAAAGGAAAAACTCCTTGTTA AATTTTCTTCATTTCTATTCAATGAATTTCATATTTTTACCTACCTTCTTTGTACTATTTTTTTTTTTCTGTTTGTCTTT GGCTTAATTTTTGCTGTTAATGATGAAACAATCAATTGGATTGTTTTAAATCATTAATGATTAAATTACTTCTTTGATTT GGTCTAAT
CDS sequence (LotjaGi6g1v0062100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTTCAAGAAGAAGGCAGATTATGGATTCAACGGCTTTCGAGTCCCTGTTATTCCTAAAGCTCCTAGATCTGCGAG AAGGAGGGGTCCATTTAGAAATTCCGTTGAGGATGGTCAAGCATGTGCTTTCGACCTATTGGCATCTTTAGCTGGAAAGT TGTTACAGGAGAGTGAAAGCTCTGCTGCTAGCAATGCATCTGAAGGAAATCTTCAGCCTGCTGTTAAACCATTGACAATG GAGGGAATTTGTCAGGGAAATTGTGCAGAGAGTGTTGTTAAGAATGAGGTAGCCTCTCAAAACAGTAGTCAGAAACCTCT TCTGCATTCCAAGCCTGATTGTTTAGTAGGATATGTTTCTGTAAATAATAGTTCTGACTGTTTGGAAAAAGTCGAAACTG GTGTGAAGACTGAGGCTTTCGACCGGGATAAAAAATATGTGCATTATTCTAATAGATTAGTGGAAATACATGAAAAATTT AAGGATTCTTGTGATGGTATAATAAAGAATGGATTTAGACAGGGAAAAGAAGCTGGCAGTTCAGACTTTCAGGGATCAAC TTTGGGTGATAAATATGGTTTGAAGGACCAATTAGATTTGTATGCTACTCCTGCACTAATTGACTCAAAAGTTAATGTTA AATATCCACGTAAATCTTTTCCCAGTGCTTCTTTTTCCAAGCTAGGGAATGGTAGTAAGTTAGAATTTAGAGATGATGAC GAAAACCTTTTAAGGTGCAAAAGACTTTGCACAAAATCAAAGGCCTTTAGGTCTCCACGACGCATTGCCCACCGAAGAAT CAAGAATCTGCTGTCGTCCAAATACTGGAAGGTTGCTCCAAAGCTGAAGGAATGTGATCTTCCTGTATCTGATCTAGGAG TACCTCTTTATCGGAAGAGGAAGGCTTGTTACGGATTTGAAAGATCCCAGCGCAGCACTATTGCTAAGAGGAGGAAATTC TTTGACCACGTTTCGGGGGTAACTTCTGATGGAGGATTCAGCAGTGAGAGTGTGTCTAATTCACCTATGAAAGGAGTGGA TGGAGACAAACCTTGCTCATCTGCAAAACTTCTTGTCCCACAGGATTCTCATGTGAAATTTAGCATTAAGTCATTCAAGA TACCAGAGCTTTATATTGAGGTTCCTGAAACTGCAACTGTCGGTTCACTAAAGAGGTCGGTCATGGAATCTGTGATGGCT ATACTCGGAGGTGGTGTGCATGTTGGTGTAATTCTTCAGGGGAAAAAAGTTAGAGAGGACAATAGAACACTTATGCAGAC TGGTATATCTTGCAAAGAAAATCTCGATACCCTTAGTTTCACGTTGGAGCCCAGTTCTCTTCTAGCTTCTCCAGCTGTTT GTGTTGGTGGCGGTCCTTCTTCCCAATGCGAAACATTCGAACCTATTGGGTCCCCCGAAACTCCTGTCCTAGATTCAGGG ATTACTGGTACCTTACTTGACCCGTCCTTGCTGACAAATCCGAGCAACCTAGTTGAAAGTAACCATGAGTCCACTTCTTC CCCCACTGACACAACAGTTGACAATATAACACCAGATTCCAGAGCGATAGTTGCCGTTCCAACTAGTGCTGAAGCATTAG CTGTGGTTCCTGCAAGTCAGAAGACCAAGCGCGCTGATTATGCACAGCGTCGGACCAGGAGGCCATTTACTGTGTATGAG GTAGAAGCACTTGTTCACGCAGTTGAAGAACTTGGAACTGGAAGGTGGCGTGATGTTAAGTTGCGATCTTTTGAGAATGC AGACCACAGGACTTATGTAGACTTAAAGGATAAATGGAAGACATTAGTGCACACTGCAAGCATCTCCCCTCAACAAAGGA GAGGAGAGCCAGTACCCCAGGAGCTATTAGATAGGGTTTTGGCGGCACACTCTTACTGGTCTCAGCACCAAGCCAAGCAA CATGGCAAGCCCCAAGTTGGACCTGGCACCTTGAAGATTGCAGAAGCTGCACCTGAAAGATCATGTTTGTTGAAGGTGTA G
Protein sequence (LotjaGi6g1v0062100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVFKKKADYGFNGFRVPVIPKAPRSARRRGPFRNSVEDGQACAFDLLASLAGKLLQESESSAASNASEGNLQPAVKPLTM EGICQGNCAESVVKNEVASQNSSQKPLLHSKPDCLVGYVSVNNSSDCLEKVETGVKTEAFDRDKKYVHYSNRLVEIHEKF KDSCDGIIKNGFRQGKEAGSSDFQGSTLGDKYGLKDQLDLYATPALIDSKVNVKYPRKSFPSASFSKLGNGSKLEFRDDD ENLLRCKRLCTKSKAFRSPRRIAHRRIKNLLSSKYWKVAPKLKECDLPVSDLGVPLYRKRKACYGFERSQRSTIAKRRKF FDHVSGVTSDGGFSSESVSNSPMKGVDGDKPCSSAKLLVPQDSHVKFSIKSFKIPELYIEVPETATVGSLKRSVMESVMA ILGGGVHVGVILQGKKVREDNRTLMQTGISCKENLDTLSFTLEPSSLLASPAVCVGGGPSSQCETFEPIGSPETPVLDSG ITGTLLDPSLLTNPSNLVESNHESTSSPTDTTVDNITPDSRAIVAVPTSAEALAVVPASQKTKRADYAQRRTRRPFTVYE VEALVHAVEELGTGRWRDVKLRSFENADHRTYVDLKDKWKTLVHTASISPQQRRGEPVPQELLDRVLAAHSYWSQHQAKQ HGKPQVGPGTLKIAEAAPERSCLLKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 663 | 663 | 0.0 | – | |
| PANTHER | 1 | 663 | 663 | 0.0 | – | |
| MobiDBLite | 494 | 515 | 22 | - | – | |
| Gene3D | 541 | 645 | 105 | 3.3E-43 | – | |
| ProSiteProfiles | 548 | 607 | 60 | 15.631 | ||
| SMART | 552 | 605 | 54 | 8.7E-6 | ||
| CDD | 554 | 604 | 51 | 1.14763E-16 | – | |
| SUPERFAMILY | 554 | 635 | 82 | 7.36E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi6g1v0062100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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