Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0062100 |
| Transcript ID | LotjaGi6g1v0062100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Telomere binding protein; TAIR: AT3G12560.1 TRF-like 9; Swiss-Prot: sp|Q9C7B1|TRP3_ARATH Telomere repeat-binding protein 3; TrEMBL-Plants: tr|I1LMF8|I1LMF8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0062100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:11314251..11319576) extracted from Lotus japonicus Gifu genome v1.2.
AAAGGCTTTGCTTCACTTCCACGTGTCACAAGCAATCCATATAGGGGTTGTGTTGAGGGGTTAAGAATGGGTATAGAGAG GGTTTTGGTAGGGATGAAGGTAACCTTCTATAACAAGTAGCAATGCACTTTTACCGGCTATTCAGGTTATGTGGTCAAAA CCAGGTTGGATATAAAGGGTTTAAGGCCACTATTGCGTGGTTTTTGGTTATGGTATTGGTGGGTTTTTGTCCTCTTAAAA ACTCTTCTCTCTATCAACTATTCTATCTATCTATTGTTTCGTTCCATCTCACAAAACAAGAAAGAAAATAAGAGGAAAAG AAAATAAAAAAAATTTCAATATTTTTTCAAAGAGAGAGAAAGTTGAGGAGTTTGGTTTTGTTGATTCAGTTCCTGAATTC CCTTAGATCTTGCATTTTTCGGACAATTTTCATCTGGGTTTTGTTTTGCGCACCAAAAGTTTGCACCTTTTTTCCTCTGT CGGAAAATGGCTTTCCTCGGAAATTCAGTTACTTGATCGTAATTTGGTTCCTCGGATCGTTGCTTGTTCTCGAATGTTGT TCAGGTATGTTGGTTTGAGAGGTTTTGTTGCATGTCAGAGGTTTTGAATTTCGGTTTTTTTGGTGTGATCTCATCATGGG TTCATGGCGGGGATCAATTCTCAACTCTGCATAGTTCTTGTTGAATTTGGGTGATGCAGAGAGGGGAATTGTGGTGGTGT TTTGTGTGCAATTTGGTTTCTGACTTAAAAAGATTCATTTTTGGTTCTTGGAAAATTGTGGGGTGGAGTTCAGAATTGAG ATCCGATCGTGGAAGTTAGGCTTTGTTTGTTGTGTGTGTAACTGGTTTTGGTTTGTTTCAATGTGAAAATTATGAATTTT TAATTCTGGGGTGTGACTTTTTTTTTTTTTCATTTTAGCCTGAATTGTTGCAGTTGAAAGATCACATCAACTTTGATTAT CGGAAATGGTTCAATTTTGGTTGATCTCAGAGAATTAGTACTCATAAATTGGTGCTTTGATGGTGTTGAATTTTATGATC CTTCCACCCTTAAACGTGTGTGTGTGTCTTTTTGGTTTGATCATGGAGTTACATGCGGTTATTTCATAATTGTTTCATAC AGTTTCATGAAATTCATCTGAATCCATTTTATAACCGTTTTTGTAACTGCCGTGATGTGGATTCAGCTTTCAATCCCTTC CTTCTATGTGTAGTCAGTTTATTCATTGTTATGTCCAGTTCAATGAAATTGAATCTGTGAATCAAGTGGGGTAGTATTTG GAATTGTTTTAAATCTGATCTTGATCTTTCCTTATGTATTCATTTGTGAATGCTCCTTTTGCCTTCATGCTGTACAATTG GCAAACAAAATTGTAAAGGATGTCTTAATTAATCACCTCCTATATAAATCCATATTAATTGAAATTGTCCCTGTTAATTG AAGATTAGATCATTCAACTTGCATTCATTGGTAGTGTGTGAAGAAGAACCGCCAACTGTTTGGCGATATGTGTGTATGTG TGTGTAGTAATTGCTGATTTAAAGTAGTTGCAAATGTTTCAGTGGTAGTGTGATGTTGCATTCTCAATTTGCATAAAGCA ATAAAGTGAGAATTAACTTGATATGTGGGTTTTCTTTCAATCTTTATGACAGTAAAGAGGATCTGGTGAATTGATGCTTC CGGCTATTTGACGAGCTTATAAATATATGTTTAAACTATGGTGTTCAAGAAGAAGGCAGATTATGGATTCAACGGCTTTC GAGTCCCTGTTATTCCTAAAGCTCCTAGATCTGCGAGAGTAAGTACTAGCTGCACTTATGGGAATGGTTTTATGTTCCAT TTTTTGTTTTTGTTTTGAACTCTATTTAATCCCTTTAATTTTGACAATTGTTCAGAGGAGGGGTCCATTTAGAAATTCCG TTGAGGATGGTCAAGCATGTGCTTTCGACCTATTGGCATCTTTAGCTGGAAAGTTGTTACAGGAGAGTGAAAGCTCTGCT GCTAGCAATGCATCTGAAGGAAATCTTCAGCCTGCTGTTAAACCATTGACAATGGAGGGAATTTGTCAGGGAAATTGTGC AGAGAGTGTTGTTAAGAATGAGGTAGCCTCTCAAAACAGTAGTCAGAAACCTCTTCTGCATTCCAAGCCTGATTGTTTAG TAGGATATGTTTCTGTAAATAATAGTTCTGACTGTTTGGAAAAAGTCGAAACTGGTGTGAAGACTGAGGCTTTCGACCGG GATAAAAAATATGTGCATTATTCTAATAGATTAGTGGAAATACATGAAAAATTTAAGGATTCTTGTGATGGTATAATAAA GAATGGATTTAGACAGGGAAAAGAAGCTGGCAGTTCAGACTTTCAGGGATCAACTTTGGGTGATAAATATGGTTTGAAGG ACCAATTAGATTTGTATGCTACTCCTGCACTAATTGACTCAAAAGTTAATGTTAAATATCCACGTAAATCTTTTCCCAGT GCTTCTTTTTCCAAGCTAGGGAATGGTAGTAAGTTAGAATTTAGAGATGATGACGAAAACCTTTTAAGGTGCAAAAGACT TTGCACAAAATCAAAGGCCTTTAGGTCTCCACGACGCATTGCCCACCGAAGAATCAAGAATCTGCTGTCGTCCAAATACT GGAAGGTTGCTCCAAAGCTGAAGGAATGTGATCTTCCTGTATCTGGTAAGATGCCTTTAAAAGTGTTCTACCAAATGCTT CAACATCTGATGCCTATACTATGTCTATTTGAGTGATTGTCATTTCCACTGACAGTAATATAGAATTTGCAGATCTAGGA GTACCTCTTTATCGGAAGAGGAAGGCTTGTTACGGATTTGAAAGATCCCAGCGCAGCACTATTGCTAAGAGGAGGAAATT CTTTGACCACGTTTCGGGGGTAACTTCTGATGGAGGATTCAGCAGTGAGAGTGTGTCTAATTCACCTATGAAAGGAGTGG ATGGAGACAAACCTTGCTCATCTGCAAAACTTCTTGTCCCACAGGATTCTCATGGTAACTCATTCCCTTATGTTTATTCA TTTTGCTTATCTTTATTGTTCATTACACTAAATAGTAACTTATGTGCTGTGTGTAACTTGTGAACAGTGAAATTTAGCAT TAAGTCATTCAAGATACCAGAGCTTTATATTGAGGTTCCTGAAACTGCAACTGTCGGTTCACTAAAGGTATAAATGTTAA TAATGAAATGTATCGACAGCATTAGTATTTCTTTTCAGAAAAAATATTATTGTTGTTAAAGCTTCATCGATGCTTGTCAT CTGTGTTTTTTCAAGCCAATGTATCTTCTACTTATCCCACATGTGACTGTCTTTCTCTGACTCTAACCTTTGCAGTGTGT ATTTTTCAAATTTTTGTAGAGGTCGGTCATGGAATCTGTGATGGCTATACTCGGAGGTGGTGTGCATGTTGGTGTAATTC TTCAGGGGAAAAAAGTTAGAGAGGACAATAGAACACTTATGCAGACTGGTATATCTTGCAAAGAAAATCTCGATACCCTT AGTTTCACGTTGGAGCCCAGTTCTCTTCTAGCTTCTCCAGCTGTTTGTGTTGGTGGCGGTCCTTCTTCCCAATGCGAAAC ATTCGAACCTATTGGGTGAGCCAAACTTGATGACATAGTTTCTTTCCATGATCATTTGACAAAAAAAGTAAATGAATTTT GCTTATGAATCAGCACTATTCAGTTGAATTTAATAAATTGTTCATTTGATTTTTCTAGGTCCCCCGAAACTCCTGTCCTA GATTCAGGGATTACTGGTACCTTACTTGACCCGTCCTTGCTGACAAATCCGAGCAACCTAGTTGAAAGTAACCATGAGTC CACTTCTTCCCCCACTGACACAACAGTTGACAATATAACACCAGATTCCAGAGCGATAGTTGCCGTTCCAACTAGTGCTG AAGCATTAGCTGTGGTTCCTGCAAGTCAGAAGACCAAGCGCGCTGATTATGCACAGCGTCGGACCAGGAGGCCATTTACT GTGTATGAGGTAGAAGCACTTGTTCACGCAGTTGAAGAACTTGGAACTGGAAGGTACTACAATGTTATCAATATCAGCTT TACCTCAAGATACACAGCAGAACAGGATTGCTTATATGTTTACATTATGTAGGTGGCGTGATGTTAAGTTGCGATCTTTT GAGAATGCAGACCACAGGACTTATGTAGACTTAAAGGTACATTTTTTTCTCTCCTTCCCTCCAGACAGTTGCTTTTAACT TTAGATATAACTTTACATGGTTAATGGCAATCTAAGTTTCTTATAATTAATTTGGATTTGGCCCTTGTCGGATCCTGTTT CCTGCTTGATTCTGAAGAGATTTTCAAGTAAGATTTGTTACCTAGGAGAAAATGATTGGCTTAATTATCCAACTTTAATT TCTGTTTCGTGGTTGTCATTGTATTGGTTTTTGTATGGCTGATGGCATAAATATTGTCCTGAGCATTATGCATATTTTCT TAAGATGATAAAGTCCCCATATATTAGCTGCATTTTAGAAATCCTTCTACAATTGATTCTGCATCTGAAATCAATTCATG AGGAGAAATTCTTATGAGTAGTTTGTCTGCCAGAATTGATTCTGAGTAAAGAGAAAATTGATTTAAACATGTCATTAGAT GCTTTAGAACCTGAGTTAGGCCTAGCTCTACCCTAAAAGCTAGCTTAGAGGTGACGGTTTCTCTACCCTTTATAAGAACT CTTCTGGTCATATCTTTGTAATGCTACTGGCATTGCTTGATTGCTAAATGATGAAACCTATTGGTGTGTTGTGCAGGATA AATGGAAGACATTAGTGCACACTGCAAGCATCTCCCCTCAACAAAGGAGAGGAGAGCCAGTACCCCAGGAGCTATTAGAT AGGGTTTTGGCGGCACACTCTTACTGGTCTCAGCACCAAGCCAAGCAACATGGCAAGCCCCAAGTTGGACCTGGCACCTT GAAGATTGCAGAAGCTGCACCTGAAAGATCATGTTTGTTGAAGGTGTAGAAAGGACTACTTGTGTTGCTGACAGGAAAAG AAAAAGAAGAAGAACATAAGAAGACTCAACTTGTACATTTTGTTTCAAATTCATGTAATATTCTCACACCAAATTCTTTG CCTGCCCCAAATTGCATGCAGGTTGGCATTTGTAAATGATTTGATGCAATAAGGTTGTTAATTCCATTGTTCTTTTATTT TTTGTTAATTTCAATTTCATTTATGAATGTATCTAGAAATGTCAACACGACATGACATAGGAAAAAGGAAAAACTCCTTG TTAAATTTTCTTCATTTCTATTCAATGAATTTCATATTTTTACCTA
CDS sequence (LotjaGi6g1v0062100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTTCAAGAAGAAGGCAGATTATGGATTCAACGGCTTTCGAGTCCCTGTTATTCCTAAAGCTCCTAGATCTGCGAG AAGGAGGGGTCCATTTAGAAATTCCGTTGAGGATGGTCAAGCATGTGCTTTCGACCTATTGGCATCTTTAGCTGGAAAGT TGTTACAGGAGAGTGAAAGCTCTGCTGCTAGCAATGCATCTGAAGGAAATCTTCAGCCTGCTGTTAAACCATTGACAATG GAGGGAATTTGTCAGGGAAATTGTGCAGAGAGTGTTGTTAAGAATGAGGTAGCCTCTCAAAACAGTAGTCAGAAACCTCT TCTGCATTCCAAGCCTGATTGTTTAGTAGGATATGTTTCTGTAAATAATAGTTCTGACTGTTTGGAAAAAGTCGAAACTG GTGTGAAGACTGAGGCTTTCGACCGGGATAAAAAATATGTGCATTATTCTAATAGATTAGTGGAAATACATGAAAAATTT AAGGATTCTTGTGATGGTATAATAAAGAATGGATTTAGACAGGGAAAAGAAGCTGGCAGTTCAGACTTTCAGGGATCAAC TTTGGGTGATAAATATGGTTTGAAGGACCAATTAGATTTGTATGCTACTCCTGCACTAATTGACTCAAAAGTTAATGTTA AATATCCACGTAAATCTTTTCCCAGTGCTTCTTTTTCCAAGCTAGGGAATGGTAGTAAGTTAGAATTTAGAGATGATGAC GAAAACCTTTTAAGGTGCAAAAGACTTTGCACAAAATCAAAGGCCTTTAGGTCTCCACGACGCATTGCCCACCGAAGAAT CAAGAATCTGCTGTCGTCCAAATACTGGAAGGTTGCTCCAAAGCTGAAGGAATGTGATCTTCCTGTATCTGATCTAGGAG TACCTCTTTATCGGAAGAGGAAGGCTTGTTACGGATTTGAAAGATCCCAGCGCAGCACTATTGCTAAGAGGAGGAAATTC TTTGACCACGTTTCGGGGGTAACTTCTGATGGAGGATTCAGCAGTGAGAGTGTGTCTAATTCACCTATGAAAGGAGTGGA TGGAGACAAACCTTGCTCATCTGCAAAACTTCTTGTCCCACAGGATTCTCATGTGAAATTTAGCATTAAGTCATTCAAGA TACCAGAGCTTTATATTGAGGTTCCTGAAACTGCAACTGTCGGTTCACTAAAGAGGTCGGTCATGGAATCTGTGATGGCT ATACTCGGAGGTGGTGTGCATGTTGGTGTAATTCTTCAGGGGAAAAAAGTTAGAGAGGACAATAGAACACTTATGCAGAC TGGTATATCTTGCAAAGAAAATCTCGATACCCTTAGTTTCACGTTGGAGCCCAGTTCTCTTCTAGCTTCTCCAGCTGTTT GTGTTGGTGGCGGTCCTTCTTCCCAATGCGAAACATTCGAACCTATTGGGTCCCCCGAAACTCCTGTCCTAGATTCAGGG ATTACTGGTACCTTACTTGACCCGTCCTTGCTGACAAATCCGAGCAACCTAGTTGAAAGTAACCATGAGTCCACTTCTTC CCCCACTGACACAACAGTTGACAATATAACACCAGATTCCAGAGCGATAGTTGCCGTTCCAACTAGTGCTGAAGCATTAG CTGTGGTTCCTGCAAGTCAGAAGACCAAGCGCGCTGATTATGCACAGCGTCGGACCAGGAGGCCATTTACTGTGTATGAG GTAGAAGCACTTGTTCACGCAGTTGAAGAACTTGGAACTGGAAGGTGGCGTGATGTTAAGTTGCGATCTTTTGAGAATGC AGACCACAGGACTTATGTAGACTTAAAGGATAAATGGAAGACATTAGTGCACACTGCAAGCATCTCCCCTCAACAAAGGA GAGGAGAGCCAGTACCCCAGGAGCTATTAGATAGGGTTTTGGCGGCACACTCTTACTGGTCTCAGCACCAAGCCAAGCAA CATGGCAAGCCCCAAGTTGGACCTGGCACCTTGAAGATTGCAGAAGCTGCACCTGAAAGATCATGTTTGTTGAAGGTGTA G
Protein sequence (LotjaGi6g1v0062100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVFKKKADYGFNGFRVPVIPKAPRSARRRGPFRNSVEDGQACAFDLLASLAGKLLQESESSAASNASEGNLQPAVKPLTM EGICQGNCAESVVKNEVASQNSSQKPLLHSKPDCLVGYVSVNNSSDCLEKVETGVKTEAFDRDKKYVHYSNRLVEIHEKF KDSCDGIIKNGFRQGKEAGSSDFQGSTLGDKYGLKDQLDLYATPALIDSKVNVKYPRKSFPSASFSKLGNGSKLEFRDDD ENLLRCKRLCTKSKAFRSPRRIAHRRIKNLLSSKYWKVAPKLKECDLPVSDLGVPLYRKRKACYGFERSQRSTIAKRRKF FDHVSGVTSDGGFSSESVSNSPMKGVDGDKPCSSAKLLVPQDSHVKFSIKSFKIPELYIEVPETATVGSLKRSVMESVMA ILGGGVHVGVILQGKKVREDNRTLMQTGISCKENLDTLSFTLEPSSLLASPAVCVGGGPSSQCETFEPIGSPETPVLDSG ITGTLLDPSLLTNPSNLVESNHESTSSPTDTTVDNITPDSRAIVAVPTSAEALAVVPASQKTKRADYAQRRTRRPFTVYE VEALVHAVEELGTGRWRDVKLRSFENADHRTYVDLKDKWKTLVHTASISPQQRRGEPVPQELLDRVLAAHSYWSQHQAKQ HGKPQVGPGTLKIAEAAPERSCLLKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 663 | 663 | 0.0 | – | |
| PANTHER | 1 | 663 | 663 | 0.0 | – | |
| MobiDBLite | 494 | 515 | 22 | - | – | |
| Gene3D | 541 | 645 | 105 | 3.3E-43 | – | |
| ProSiteProfiles | 548 | 607 | 60 | 15.631 | ||
| SMART | 552 | 605 | 54 | 8.7E-6 | ||
| CDD | 554 | 604 | 51 | 1.14763E-16 | – | |
| SUPERFAMILY | 554 | 635 | 82 | 7.36E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi6g1v0062100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…