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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0063700 |
| Transcript ID | LotjaGi6g1v0063700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AT hook motif DNA-binding family protein; TAIR: AT3G55560.1 AT-hook protein of GA feedback 2; Swiss-Prot: sp|Q9M2S3|AHL15_ARATH AT-hook motif nuclear-localized protein 15; TrEMBL-Plants: tr|K7MPQ1|K7MPQ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0063700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:11786230..11789821) extracted from Lotus japonicus Gifu genome v1.2.
TATTGGTAATATAAAAATATTCTTGTACACAAAATCTGAATGCTGCAGCTATTGACGAAGTACATGGGTCAATCCTCGAC AGGGTCATAATTTTCCGTCTGAAGCCCCTCGCGGTGCTCCAGTGAATACCAACCAAGACACAAAGCACGAGGACAACAGA GTAAATTCAAGGTGTAACTCTTACCACTGTTTTGTTATTACATACATACAATACATTCATACACAAACTTAGGAATAGGA AAACGGTTTTTTCTTTCTTTCTCACTCAATTGCGCAAGTTGGTCTCTGTTTCTTTGTCTGTCTAATCTTGTTTTGAACGA AGGTGAGTGAGTAGGTGACACAACAACACCAAGTGGATGGGGCTCTGCTTGCTTGGGAAGTTGAAAACTTTGAACACAAC ACAAGAACCGCTTACCAGGGAGACAACCATTACCCACCCCCACCCTTCCTTTCTGCACAAAACCGCTAAACCACTGTTCC TTCAAATTTCCACTTCATCAACTTCAAATTATTCAAAAGAGAGAGAAACAAAAACAAAAAAGAGTTATATATTATTTCTA TTTGAGCTCATCCTTTAACTCAAAGGACAACTCTCTCATACCCATCAGGCAATAGATAAACATCTCCTTTCAAGGAAAAT AAATAAATAAAAAATAAGAAAAAAGATCTTGCAGCAGCAAGCAGCTAGGGGTCCCCCTCATAGTTAAGGTATAGTACTAT TACCCCACCACCATATATCAATTTTCTCTGACCCCATAAGTGGCATAGATTGAGGTACAGAAAAAGCTATATACCAGAGA GATTTCCTTTCCTTGTAGCTGCTTGTTGTTGAGGGGTTTCCTTTACTTTTGTACTTGAAGCAGTTTTTCCTTAAGCTTTT TGTGTCTTGAGTTGAGTTTCTCTGTTGTTATATATATATAACTGAGTTTTTCTTTTTCTTCTCTGTTTTTCTTTGAATTA GATGGATGTGACTTGTTCAATTTAGAGGGATATTTTATACATGTGGCTAGGGTTTACATGCAAAATTTGAACCCTGATTT CATGCAGTGAGTTGAGGAAAGAAGTCTCTAGATAAGTTTGGATAAGGTTTTCAGCTGCTGCATCATCTATTGGGGTCCAG CTTCAGAGATCTGAGGAAAAATATCCAATTCACAAAATCTTTTCTGGGTTTGATTCAAAGATGGCGAATCGATGGTGGAC TGGGAATGTGGCTATGAGAAGGGAGCAAGAATTCATGGAAAACAACAACAACGCCGCCGGAAACGCTGTTGCTACTCCGA CCAACAGCAGCAACAGCAACACCAACGCGACGGAGGATGAGGAGAACAACAACAACAACCACAACAACGCAGAGGAGCAG AATCCCGGCAGCCATGATGGGTCGGAGCCGGGGAGCAGCGGGAGGAGGCCGAGGGGCAGGCCGCCGGGGTCGAAGAACAA GCCGAAACCTCCGGTTGTGATTACCAAGGAGAGCCCCAACGCGATGCGGAGCCACGTGCTGGAGATCTCCAGTGGCAGCG ACGTGGTGGAGTGCATAGCCGCCTTTGCTAACCGCCGCCACCGCGGCGTGTCGGTTCTCAGCGGGAGCGGCATTGTCACC AACGTGACTCTCCGCCAGCCGGCTGCCCCGGGTGGCATCATTACCCTCCATGGGAGGTTCGAGATACTCTCGCTGTCCGG AGCGTTCCTGCCGTCACCATCACCTCCGGGAGCCACCGGGCTGACAGTGTACTTAGCCGGCGGGCAGGGGCAGGTGGTTG GTGGCGCGGTTGCGGGCTCGCTGGTGGCTTCCGGGCCGGTGATGGTGATTGCAGCAACATTCGCGAATGCTACTTTTGAG AGGCTGCCCTTGGAACCGGAAGAGCAAGGTGAAGAGGAAATGCAGGTTCGGCAGCAACAACAACAATCAGGGGTTAATAA TTCATCAGCAAGTGTTGGAGCTTCTGCTACTGTGGTTTCTCAAGGATTAGGTGAACAGCAACAACAGGTTTCGATGCCAA TGTATAATTTGCCTCCAAATTTGATGCACAATGGTCAGATGCAGCCTCATGATGTGTTCTGGGGACCTCCACCTCGTCCT CCACCTTCTTTCTGAAGGTAGAAACATTGTAGAATTATAGAGGGTTGTTAAATGTTAATGGTGTTTCTTCTTGCTGACTT GTATTACTTGTGCAGTGTGTAGTGTGTTCTGACCGTTTTCTTGTAAGCATATCAAGGTTAGGATGTTTTTATCCCTTTTG TTCATTTGGTTGTTTCTGAGAAACTCACTAGATGTTGATGTTTTTTATATGTTTAGATACTTTTGTGCTGTTTGCTTCTC TTCTTTCTCTTGTGTTGTATTTTGGTAGAGTATATATTTGGATACTTGTTGGCGTCCATGCCAATCGGCATTTGCACTCG ATACTTCGGGGTAAAAAGTGAATGAAACTTATCTTATGGCCGATGAATGTGCTTTCACGTTAATTCAACTGGTATTCAAT CACACATGAGAGTTCAATCGTGATTTTGTTGTTGAGGATAAATGTGAAATGGTCCAGGAATAATTTGCAGACATCAATGT GCATGAATTTGTGGTGAGTGCATGTTGTTGTTGTTTGACTCTATTGCTTGTTTGTGTTGTCCGCTTAGTACTACTTCATT GAGGTGATGAAATTGGTGGAAAGTCATAGCTAGTGAGTAAATGGTGTTGGATTTTAGGGCATTGGATATTTTTGGAGATG CTATTTTGATTTTGATAGTAATTAAGGGGATGGGATAAAGGTGTGTGGTGGGGTTGGTTCATCTCCCTTATCCTTGAATT CATCATGCTGTGTAGACTTTAAGAGTAGACCATGCTGGTTTAACATTATTTTGCTTGTTCTAGCTAGATGATGCCAGGAA AAAGGTTGTCCTGGTGCAAGTCCATCTTGTTTTAGATTTTACTTGTCAGCTTTTTTCAGAATTGTAGGAACTAGGAAGGA CACTTGTTACAGTGTACACCCTCCGGTCACTATTATAAGCAAAAGTTAGCTCTTTAGATTCATTCAATAAATGATGTATG TGGTCATTAAAATGGTCACATACATCATTTATTGAATGAATCTAGAAAGCTAACTTTTGCTTATAATAGTGACCGGAGGG TGTAAATTTCCAGGTTTGGACAAGAAGGATTGATTTTGGAAGAAGGCTACTAGGAGTAGTTTTTGTGAGTAAAGAAGTAA TTCTGGGAGGATTAAAAAGTAAATAATCATGCTGTTAATTTTAGTTCTGGACTTCAGTTTAATTGTATCACTTGTGTTTG GAAAGTAGAGACCTATCTAACCAACATTTTTTTAATGTGAGTTGATAGTTAATATCAACAAGCATGAAGGCTGGGAGGGG TTTCCACAATATGCTCACTATGTTTTAAATGTTTTTTATTGTTCCTTTAAATAATACACTATCTCAACTTTCCTTGTTTT GGATGATGTTGAAACTTGAAAGCAGATGAAGATGCGGATTCCCAACATGTACTTGTCTCCTTGTTATTTTCCTTTTATAG AACTTTGTCATATTTTTGAAAACAACTTTGTCATATTTATTAGAACAAGCAACGCAACATTTGTATTTTCTG
CDS sequence (LotjaGi6g1v0063700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAATCGATGGTGGACTGGGAATGTGGCTATGAGAAGGGAGCAAGAATTCATGGAAAACAACAACAACGCCGCCGG AAACGCTGTTGCTACTCCGACCAACAGCAGCAACAGCAACACCAACGCGACGGAGGATGAGGAGAACAACAACAACAACC ACAACAACGCAGAGGAGCAGAATCCCGGCAGCCATGATGGGTCGGAGCCGGGGAGCAGCGGGAGGAGGCCGAGGGGCAGG CCGCCGGGGTCGAAGAACAAGCCGAAACCTCCGGTTGTGATTACCAAGGAGAGCCCCAACGCGATGCGGAGCCACGTGCT GGAGATCTCCAGTGGCAGCGACGTGGTGGAGTGCATAGCCGCCTTTGCTAACCGCCGCCACCGCGGCGTGTCGGTTCTCA GCGGGAGCGGCATTGTCACCAACGTGACTCTCCGCCAGCCGGCTGCCCCGGGTGGCATCATTACCCTCCATGGGAGGTTC GAGATACTCTCGCTGTCCGGAGCGTTCCTGCCGTCACCATCACCTCCGGGAGCCACCGGGCTGACAGTGTACTTAGCCGG CGGGCAGGGGCAGGTGGTTGGTGGCGCGGTTGCGGGCTCGCTGGTGGCTTCCGGGCCGGTGATGGTGATTGCAGCAACAT TCGCGAATGCTACTTTTGAGAGGCTGCCCTTGGAACCGGAAGAGCAAGGTGAAGAGGAAATGCAGGTTCGGCAGCAACAA CAACAATCAGGGGTTAATAATTCATCAGCAAGTGTTGGAGCTTCTGCTACTGTGGTTTCTCAAGGATTAGGTGAACAGCA ACAACAGGTTTCGATGCCAATGTATAATTTGCCTCCAAATTTGATGCACAATGGTCAGATGCAGCCTCATGATGTGTTCT GGGGACCTCCACCTCGTCCTCCACCTTCTTTCTGA
Protein sequence (LotjaGi6g1v0063700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANRWWTGNVAMRREQEFMENNNNAAGNAVATPTNSSNSNTNATEDEENNNNNHNNAEEQNPGSHDGSEPGSSGRRPRGR PPGSKNKPKPPVVITKESPNAMRSHVLEISSGSDVVECIAAFANRRHRGVSVLSGSGIVTNVTLRQPAAPGGIITLHGRF EILSLSGAFLPSPSPPGATGLTVYLAGGQGQVVGGAVAGSLVASGPVMVIAATFANATFERLPLEPEEQGEEEMQVRQQQ QQSGVNNSSASVGASATVVSQGLGEQQQQVSMPMYNLPPNLMHNGQMQPHDVFWGPPPRPPPSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 304 | 301 | 2.4E-131 | ||
| PANTHER | 4 | 304 | 301 | 2.4E-131 | – | |
| PIRSF | 14 | 304 | 291 | 2.0E-105 | ||
| MobiDBLite | 21 | 100 | 80 | - | – | |
| MobiDBLite | 21 | 68 | 48 | - | – | |
| Coils | 40 | 60 | 21 | - | – | |
| SUPERFAMILY | 99 | 227 | 129 | 6.8E-34 | – | |
| ProSiteProfiles | 99 | 237 | 139 | 41.777 | ||
| Gene3D | 102 | 244 | 143 | 1.3E-10 | – | |
| Pfam | 103 | 215 | 113 | 3.4E-29 | ||
| CDD | 103 | 185 | 83 | 3.8171E-22 | ||
| MobiDBLite | 226 | 304 | 79 | - | – | |
| MobiDBLite | 235 | 275 | 41 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | AT DNA binding | Interacting selectively and non-covalently with oligo(A) and oligo(T) tracts of DNA (AT DNA). |
Expression pattern of LotjaGi6g1v0063700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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