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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0067100 |
| Transcript ID | LotjaGi6g1v0067100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Regulator of chromosome condensation (RCC1) family protein; TAIR: AT3G55580.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|I1LMJ3|I1LMJ3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0067100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:12745813..12752201) extracted from Lotus japonicus Gifu genome v1.2.
ATGAATGGCGATGGGAATAATGAAGCAATGCAAGTGGCCAAAGAGAGGATGGTGTATATGTGGGGTTACTTGCCCGGAGC ACTGCCGCAGAGAACGCCGCTGTTGACGCCGGTGATGGTTAGGGCTCCGGCGTCGGGGTATTCCTGGAAAGATGTTTGCG GTGGTGGTTGTGGATTCGCCATGGCTATCTCTGGTGCTTTACCTTTTTTTCCAATTCCCTTCTATCCTTGGTTGCTGGTT TTTTTTTTTTGTTTTTTTTTTGTTTTTGGAAATTCCCATTAGCTTTTTGTTTAAATTTCCTTTTTTGTTTATTTAATTTT AGAATCAAGTTGATTTTGGGTGGAAATTTTTGTTCTTGGGGTTCTGAATCAAAGGAATTGCTAGCTTCTTCATTACATTT GTTCTGTTTCTTTTTGTGTAGATTAGTAGCTTGAAATGATAACTTTGACTTTTTGGATTTGTTTTCTCATTTCCCTGTTA ATGGAGTGTGAAACTCAGTTGCTTTATCTTCACACTGATGTTTTGCTCAGTGAAGTCTTTATTGCTTTGTGTGATTTTTT TGGAATTGGTCAGTTACAAGGAGAATAGTTTGAGAGGTTTCTATATGTTTGTTAAGCTTTCAGTGCTAGCTAGTGGTTTT TAACTGGTTTTACTTGTTTTCATCAACCCCTAGTCCATTCACTTGAATGGAATTTTTGTTGTCCTTAGGTCTATTTATGT TTAATGTCAGTATGCCAGGGTAAGGAAATGTCTTCAGTATGAGTGTAGCTGTTGTTTGTTTTCTTGTTTAAATGATTGTA TTTGTGATTGTGCTTCTAGCATTTTCTTTTTCACATTTTATTAACTCAGAGTTTTTCATTGTTGGTCACACTTTCTTCCT TAATCAGAGCCAGGAAAGCTCATAACATGGGGTTCAACAGATGATTTAGGTCAAAGCTATGTGACGTCTGGCAAGCACGG GGTAATGCATGACCTCATTGAGTGACAATGTTTTCTGTTTGTCTCTTCTTTTTGTCAGTCAACTAATGTTTTATAGTTTA TTTGTAAAGGAAATCCCAGAGCCTTTCCCTCTTCCAACTGAAGCAATTGTAAAAGCTACAGCTGGATGGGCACATTGTGT TTCTGTAACGGGTAAGCTTAATTTCCTTATTGCCTACCTGATAAAAAACCCAATATTATGTGATTGAAAGAAGAAAGATA AACTAAAATTGAATATGTTGTAATGTTGTATTGTGTTGCTGGAGAAATTTTCCAAAATTACTTACAGTTAACTCATAATA CAAGCAGTGAATCCGAAACAAATTCAAGAAATTATCATTTAACTAGTCAATAGATTGTCTCTCCATCAACCAAGTTTTGA TCTTACAAGATTGTATCCTATTCCTTTGCAGATTGTGGAGAAGTTTACACATGGGGATGGAAGGAATGTGTTCCATCTGG AAAAGTATTTGGTGAACCGCCAACAGGTGTAAGTCCTGAAGGGCAGAGTTCATTCTTGACGGAGCAAGGTATGTTTGGCC TCTTTACAATGGTCATTTGTCTACAGCTACATGTCCCTCCTTGGAGGTGGTTTGAGCTAGCCAAGATGTACACCATGGAG TTCCCATATGGGGAACGGCTACTATATAGTATAGAATGTTTGAAACCCACAACGAAGGATACTTAGTTAGCCTTTATCTG TCTAACTGATATAGAGTGGTTTTCTACAGTGAGCCCTCATGCTCAAGTCTCAAAATCCACCGGAGGAATTGCATCTAGTA CCAGCGGAGAAGAAAATACAAAGAGAAGGAGAGTATCTTCAGCAAAGCAAACAGCTGAAACCTCATCATCGGGTGATGAT GTTCTGACAGCTTTGCCCTGCCTTGTCACTCTAAATCCGGGGGTGAGGATAACTAGTGTTGCTGCTGGTGGACGCCATAC CCTAGCATTGTCAGGTATTAACTACATTATGGACTATTTATTAACCTAAGCTTATAATTTTATATAATGTGATGTGACGA TCCGTTGTAATGTGACCATCTTTTGGTTGAAGCATGATTTTTTGGGCTATGGAAGATCAGATATGTCACATGCCATTGAT TGTAATTTTGTGGAAGTTTCAGATATAGGACAGGTGTGGGGTTGGGGCTATGGAGGTGAAGGGCAGCTTGGTTTGGGTTC TAGAATACGTATGGTGTCCTCACCCCATCTTGTTCCTTGTATTGATTCCTCTTCTTATGGTAAAGATATACCAGCACCAT TGGCTCGGGGAAACTTGAGGTCAGAGGGGCACAATGTTAGAGTTCCTGGAAGTTATGTAAAAGCGATTGCCTGTGGAGGT CGACACAGTGCAGTAGTCACAGGTATGTATGTGTCAGTCTATCAGTATTACCCGGTGAATATCTTTCAGGACAGCCTGCA TTAGTTTATTTGGGGAACCAAAAGTGAGAATATCCCTGTGCTTCATTTATAATGCGATTAACCTAAGTAGTACAGGGTTG AAAGTTTATGGTGTTTGTAAAGAGGTATACTCCTCATTATATGGTACAATCAGCACAGAATTGTTTGATTTGATGAGAGG GAGAAACAAAATGCTTAATATAGGGTCCATAAATTTGTTAAAATGTCTATAAATAGTGTCTTTCTGGATGCTAGATTTGG AATTGATAGTTAGGATATAGAAAATTGCTCTACATCCAAGGTTGCTAAATACTTCCTTATATTCTTATCTATTTATGATC AATTTCACAAGTCATGAATACTGATTTTCCATTATCTCCCTGTTGAAATGACAGATGCTGGAGCTGTGCTTGCATTTGGA TGGGGACTTTATGGACAGGTAATTGAAGGTGAATTAGGGATAACTTTGAAACTTTCTGTCTACCTACCTATCCTATTTGG AATTGTAAATTATATTCCGTTACCTACCTAAGGATATTGTTTACCAGCATTACACATGTAGAGCTCCCCTTTTCAGCAAA TTTCGCCAGTATTCATTGTTAAAAGGGATATTCTAGTGCTGAATCCCTTCTGGGGTAGACCATGCAATTGACCTCCTGGG GATCTCAATAAGATACAAAGATAAAATGAAAATTTATCAGTTGTTCTACATGTTATTTCTTGATATGGGATGTGTTTTCC ATGTATTGTACTTGGACCTTTACTCGAGTAGCAGCTCCTTTTAGGTGCTTACTTTATTGCTTAAGTTTTCATGTCAGCTA CATCTTGTTTATTTCACTAGCTAATGCTTCCTTGGTACTGTATATTTGCTGCATGCACATATTCAAAATTATGTGCTGAT TTGCCCAAAATTGCTTGACTTGAGGCTTTATCACATACTTCATGAATTTTCTTTGCTTAGCTAAATTATACTTTGATCAG TTGCAATATATATTGACCTACAACAATGCCTCAATACTATGGAATGTTTATCATTCTTTAGGATCAACATGTTGGTAAAG TCGAATATGGGGACAAAAACAATGTAGATGTTGAATATGAGGTCCACTCTAACAAGGGATCTTCTGTTCTTTCCTTTACA GTATTTTTCTTTCTAATCACTGTCTTGGTTGATGCATGCTTATTCTTGTTATACTAAATGTTATCTTGTTATGGAATAGT GTGGGCAAGGAAGTACAGATGATGAACTGAGCCCAACTTGCGTATCATCCTTATTGGGTATCCGAATAGAAGGAGTTGCT GCAGGACTGTGGCATACTGTCTGTACATCTTCTGATGGTGATGTATATGCATTTGGTGGAAACCAGTTTGGGCAACTGGG AACTGGTGCTGAACAAGCTGAGGTACGCCCTAGACATTCACCATAGAAGTCCGATGCTCCCGCTTTTTTGTCACTAAAAC ATAAAATGAAACATGACATGACTGTATTAGCATCCAATGTACTATAACTACATTATGGCAGTCAACTAAAAGTCTAAAAC TCCAAATGCATGTCATTGTTCTTAAGTAGGAATAACAATGAGTAATGACTGGGTAGGGTACTACACTCATTTCTATATCC ACATTTTAATAAGGTAGTTGTATCTGGACCCACACCCGGTTGGGTACTAAGAGCATCTCCAATGCAAGGTTGGTAGTTGG GTTGCTTAAACACTATTCTGCTGGACCCAGACTGCCACATAGGATTTAAGCAATCCAAGCAGAATTCGCTCCAACCATGG TTGCTTATTTTACTCTTGTTTAGGTCCCACTATACTTCATATAATTATATTATTTCAAGATCATGACACGTTCATGAATG AAAGAGAAAGTATAATTTTTTAATCAAAAAGCAAGAAGAAAGAGAATAAGCAACCCTTGCTTAAATTTAAGCAACCCGAG TGCCACGTCATACTGCACCAATGGTGCTCCAAAATAAGCAACGTTGCTTAAGTGCTCTTGGCATCTCCAATGGGGGTTGC TTAAACTAGTTGGCGCAGTTAAGCAACGTTGCTTATTTTGGAGCGCCATTGGAGCAACAAACATGACATGACAGTTCTGG TTGCTTAAATTTTAGCAACGTGGCTTATTTAAGCAACGGTTGCTTATTCTCTTTCTTCCTACTTTTGACTAAAAAATTAT ATTTTCTCTTTCATTCATGAACTTGAATAGTGCCATGGCCTTGAAATGATATAAATATATAGGTATAGTGGGACCCAACC AAAAGTAAAATAAGCAACCGTGGTTGGAGCGAATTCTGCTTGGGTTGCTTAAATCATATGTGGCAGTTTGGGCCCACCAG AATAGTGTTTAACAACCCAACTAGCAACCCTGCATTGGAGATGCTCTAATAACTCTAATATTTGTACCCTAACCCTTTGA ATACCAATACACCGGCATCAGATCCATTACCCACATTTTAGTTAATGTGAATATGACCTTCCATAATGTGTTTCTTTCAT AAAGTTGTAAAATATGAACCCTAATTTATACTAAAATCAAGGGTGGAAATCATCAAAATAAAAAAGCACTAATTATAAGA TAACATATAATTCAAATTGAAAAACATATAAAGATCATTCAATTCCTAGATATAAAATACTACGTCCAAAAATATTTAGC ATGATTGGAAAGTTGTTAAAAATCTTTTAACTTCTAATCAAAGATTTGATGAAATATTTGTGGGTATTGGTAGATTAGGT GCCATAATACCCATATGTGCCCCATACCCACAAAATTTTGTAAGTATTAGACATTTTTGGACCTAGACACATTTGATGGG TAAAAACCCTCCATTATGGGTTATTTTTATAGGTACCTATTGAGTGTGAGTCTGATTATCATTCCTATTCATAAGTTCAA TTAGGCATTCTGTGATATTAGTTTTAAATGTTAACTTGAATTTTGAAGCAGACTCTTCCAAGACTACTGGATTGTCCGAG CTTGGAAAATATGAATGTAAAGAGCATATCATGTGGGGCTCGTCACACTGCTCTAATGACAGGTATACCATAATAACCAG ACCTGCTTAGGCATTTTCATAACTGCATAGCTGTCCTTCCATGATTGAAGTCACTTTAATATATCCTTAACAACTGTTGG ATTTGAATACCTGTTTGATTTCTCAACAACCCTTTTTTTCTCCTAATTAATTATAAAGATAGTTTAGACCAAAAGTTATG GCACAGGCATTTTTCCTCAAGTTTGGTTGAAGTACCATATGCCAAGGCACTGATTAGAGCCACAGAAAATAATGAAACGA ACAGTTTTCTTTTTTGTTTTGAAAAATGTGGGGTGTCTGCTACTATGAAATGGCGTTGAGGTGAAAATATTCTTTATTCT AGGGAAGTCCATAATTACATAGGTGCTACTAAAATTTGAATAATCTTTGGAGAGGGTTGGCTATGAATTATTTCATGTAA TCTCTGTCAAATTAAGATAGCACATTGCTGTTTTTTTTTTTTTACTTTCACAATAATCATGCATGTTCTTTTTGCCTTAG TCATACTGATACATAATTGAGGGGCCAGTTTCTCATCATTATGCACATCAATGTTGTATTTTAAAATTTGAACAGATTCT CATTAGTTCTTTTGTTTTCATTTCTTCAAGACAATGGAAAAGTATTCTGCTGGGGATGGAACAAGTACGGACAGGTGCGT GCATTGCACTACCATTTATATGTGTATCATTTTCAAATTTTAAAGGAGCAATATTTTTGAAACTTCTATCTGACCACATG TTATTTAAGTGATAAAGTTATAGACTTATAGTTATTATGTGAATTAGTGGCATCTTCCTTGGTACTAAATCATTCTGTTG TAAGTTGTAATTTCTGGGTGTGGCAGCTTGGCCTCGGCGACGTGATTGACCGTAACGTTCCTTCTGAAGTCACCATCGAA GGTTGTGTAGCTAAAAACGTTGCCTGCGGTTGGTGGCATACTCTTCTTCTGGCAGAGTCACCCACTTGA
CDS sequence (LotjaGi6g1v0067100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTCCTCACCCCATCTTGTTCCTTGTATTGATTCCTCTTCTTATGGTAAAGATATACCAGCACCATTGGCTCGGGG AAACTTGAGGTCAGAGGGGCACAATGTTAGAGTTCCTGGAAGTTATGTAAAAGCGATTGCCTGTGGAGGTCGACACAGTG CAGTAGTCACAGATGCTGGAGCTGTGCTTGCATTTGGATGGGGACTTTATGGACAGTGTGGGCAAGGAAGTACAGATGAT GAACTGAGCCCAACTTGCGTATCATCCTTATTGGGTATCCGAATAGAAGGAGTTGCTGCAGGACTGTGGCATACTGTCTG TACATCTTCTGATGGTGATGTATATGCATTTGGTGGAAACCAGTTTGGGCAACTGGGAACTGGTGCTGAACAAGCTGAGC AGACTCTTCCAAGACTACTGGATTGTCCGAGCTTGGAAAATATGAATGTAAAGAGCATATCATGTGGGGCTCGTCACACT GCTCTAATGACAGACAATGGAAAAGTATTCTGCTGGGGATGGAACAAGTACGGACAGCTTGGCCTCGGCGACGTGATTGA CCGTAACGTTCCTTCTGAAGTCACCATCGAAGGTTGTGTAGCTAAAAACGTTGCCTGCGGTTGGTGGCATACTCTTCTTC TGGCAGAGTCACCCACTTGA
Protein sequence (LotjaGi6g1v0067100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSSPHLVPCIDSSSYGKDIPAPLARGNLRSEGHNVRVPGSYVKAIACGGRHSAVVTDAGAVLAFGWGLYGQCGQGSTDD ELSPTCVSSLLGIRIEGVAAGLWHTVCTSSDGDVYAFGGNQFGQLGTGAEQAEQTLPRLLDCPSLENMNVKSISCGARHT ALMTDNGKVFCWGWNKYGQLGLGDVIDRNVPSEVTIEGCVAKNVACGWWHTLLLAESPT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 219 | 219 | 4.9E-123 | – | |
| PANTHER | 1 | 219 | 219 | 4.9E-123 | – | |
| Gene3D | 14 | 219 | 206 | 3.5E-58 | ||
| SUPERFAMILY | 39 | 217 | 179 | 9.81E-55 | ||
| ProSitePatterns | 46 | 56 | 11 | - | ||
| Pfam | 60 | 107 | 48 | 2.7E-10 | ||
| ProSiteProfiles | 60 | 111 | 52 | 12.393 | ||
| PRINTS | 61 | 77 | 17 | 8.9E-10 | ||
| PRINTS | 95 | 108 | 14 | 8.9E-10 | ||
| Pfam | 111 | 162 | 52 | 2.9E-13 | ||
| ProSiteProfiles | 112 | 166 | 55 | 14.846 | ||
| PRINTS | 114 | 130 | 17 | 8.9E-10 | ||
| ProSitePatterns | 153 | 163 | 11 | - | ||
| Pfam | 166 | 214 | 49 | 1.7E-13 | ||
| ProSiteProfiles | 167 | 217 | 51 | 15.207 | ||
| PRINTS | 167 | 183 | 17 | 8.9E-10 | ||
| PRINTS | 204 | 219 | 16 | 8.9E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0067100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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