Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0070800 |
| Transcript ID | LotjaGi6g1v0070800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Eukaryotic translation initiation factor 3 subunit F; TAIR: AT5G05780.1 RP non-ATPase subunit 8A; Swiss-Prot: sp|O24412|PSD7A_ARATH 26S proteasome non-ATPase regulatory subunit 7 homolog A; TrEMBL-Plants: tr|I3S3L3|I3S3L3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0070800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:13481131..13485840) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTGGGCTTATCATTTTATTCTTATAAAAATGTTCTACCTTGTTGGGCCTTATATTGAACACCGAGGCCTGGGCCGCT AAAATAACTTGATCTGCGACGTCTCGTGTTCGTGTCCAACACGAAAAGAGAATAGAAGAGCGGTGAAGCAGAGTGAGAGA GAGAGAGAAATAGAGAATTGAATTGAGAAAGAAGCAAAGTGTGTTTGTTTGTTCAGTTGAATAGTTGATAATCTCTGAGG GGAAACTGCAACAATGGATGTGATAAAGACTCAGCAAGTATCATCTCGACCGATCGAGAAGGTGGTGGTTCACCCGCTAG TGCTTCTGAGCATCGTCGACAACTACAACAGAGTCGCCAAGGACACACGGAAGCGCGTCGTCGGCGTCTTGCTCGGTTCC ACTTTCAAAGGCACCGTCGACGTTTCCAACAGCTACGCCGGTTCGGATCTTCTTTTCCTTCCCTAAACCACCACCGCTTT ATGTTTTGTTTGTTTATTTCAGTTATTAATGGCAATGCACTGTGGTTTTGTGCCCTAAATTGGATAGAATTGTGTTCGTT CGAATTGAGCTGGATAGGGCTTTCTTTGAGTTAGTGATTCAGAGTGAACTCACCAGATTTCTGATTTAGGAGTATTATTA TGTGTGTAACTTTCAATATTTGATGTGATTGTGATGTGATAATCATTACTTGCTTATGCTTGACATACTGATACTATACT CTCATGTTGATTGATTCATGTAATGCAAATAGGTTTAAGAAGTTTTTGAGTTAGGGATTAGTATGAGAGATGGCTCAATT CACCTTGACTTATTTGTGAAGAATCTTGGATTTTAAGTTCTTAAATAGATGAGTTTTGTGTGACGGTCGAAAACTTGTAA GTGCTATTTTTGATTTCATTTGTGATATCTATGGTGTCAAAAGAATTCTGACTAAGTGGTTACTGAAGTTGTGACTTTTT AATAAGTTAGCATGTTTGTTATATGGTATGTCCAAGGGATAATCTTGATGTTTCCCATTACACGACTTGCTTGACTCTAT GTTGGACATCCTATTGAATTGAATGTGTAAGATCATTACTTTGGATGAAGATTTTGTTCACATGGTTTCTTTCAAATTTT AGATATATCATCAGCTATTAGGTTTTAGTGTGAGATGCCTCAATTCCACCTTGACTTATTTGTGAAGATCTTAGCTTTTA AGTTTTTCATAGATTAGTTTTGTGTGATGGCTGATGTGTTATTTAAGCTTTCATTTTGTGATATCTATCATATCAATATA GTTCTAACAGACAGCTTACCAAAGTTGTGACTTTTTATTAAATTAGGATGTTTATTATATGGTATGTTTGAGGGATAACC TCCAGTTTCCTGTGACACTAGTTGTTCCTCTCTATGTTAGGCATCCTATTGAATTGAATGTATAAGATCATTACTTCAGA TGTAGATTTTGTTCACATGGTATTTCTGTGCATATTTTAGAAATATCATAAGCTTTTAGTTTTAGCTGAATTGTCTGTCT CTTACTAATTGGTTAACTAATCTGTCACACCCCACAGTTCCCTTTGAAGAAGATGACAAGGATCCAAGCATCTGGTTTCT TGACCATAATTACCATGAATCAATGTTCTCCATGTTTAAGAGAATAAATGGTATGAGTTACCATAACAAAAATTCTTTTG TTATTCTTATTTTCTTTCTTTAGAATATTCAATCTAATCAGACATGGATATTTTTTTGTTCACAGCTAAGGAGCATGTCG TCGGGTGGTATAGCACTGGTCCAAAACTGCGTGAAAATGACCTTGACATTCATGGACTATTCAATGAGTATGTTTATTGA ACTGAAATCCTGTGTAGAATGACATTTGACTACCTTGACATTTTTACTTCATCAAAGCATTAATTTATTCCCAAATATTT TTTTTCCTTAAATGATTTTTGGGACTTATAGATTCTTTACCCCTTTATCCTCATTAGTATAATTTTCATGATTTGATTGA AACTTTATAAGACATTTTATATGTTGCTCTCATACTCTGCCTCTTTACTGGCTTACTGTCTTCATCTGTGCTTTTGTTTT ACCTATTAATCTTTCCCCAAATTGATCATTCTTAAAACCCTCGCAGCTATGTACCAAATCCTGTTTTGGTTATAATTGAT GTTGAACCTAAGGAGTTGGGAATTCCAACAAAAGCATACTATGCTGTGGAAGAGGTTAAAGAGGTAATACTTAAATCCTT TATATCTTTGATAAAATTGTACACAGTATTATTGCAAAAGTGATTCTGTTCTCTGTGATAGTGGGAGGGTAGCTAGTATT TGCTTGTCACTTAATCAGTAGGCATAGGAACTGACAGATAGTTTTTTTCTGAATACAGAATGCTACCCAGAAAAGCCAAA AGGTCTTTGTGCATGTGCAATCAGAAATTGCTGCTCATGAAGTTGAGGAGATAGGTATGCCATTGAAAGTAAAACTGCTG CAATTTTTCTATGCTTCATTTCTCTTTTCTTTGTTATCACTGATACTTTTTCAATTTCATCCACACAGTTGCCTAAACAA TTTCTACTGTTTCACATTTTTCTCACCCTTGTGCAGGAGTGGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGC ACCCTTGCAACAGAGGTTTTCTCCCCCTATCTTATTATTCTTTTCCCTTTATTTTTTCTTCTTTTTGGATCTATATGTTG TTTCCCCTTTAATATTTTGTGGTTCTTTTCAGCCAAATATTGAATGCATATGTTGACAATCTAGTCTTTTTACGTAGGTA AGTGCAAAACTTACAGCCTTGAAGGGTTTGGATGCAAGACTTAAAGAAATAAGGGGTTACCTTGACCTTGTTATTGATGG AAAGCTTCCACTAAACCATGAGATCTTGTACCACTTGCAGGTTTGTTTATCATTTTATTACTTACTATATAATGCTGATC CCTTGGCTTTGTCATCAATGGTTTATGGATTTAGATTCAAGTGTCTTCTGCCAATCCACATCTTTTAATTTACTTCAAAA TATGATTTTAACCATGGTAGTAAGTATCGTACGATACACCGATACCATACGATAGGTTTTTGAGGTCTGGCAATACAAAT AGCATGTGTGAATCGATTTCTCCGTGAATCGCACTTGAATCGTTTGTATCGTATCATGAATCGCTTGTATCATATCATGA ATCGCTGAATTGCGATTTCTCCCCTGATTATTTTGAACTTTGAAGTTTATTAAGTTGTAGGATCAAAGCATAGTTTAGCA AGTATGAAAGTACTTTGCATTTGTCATGTTATTGATGATTTTGAAGGGGATGAACATCTGCACTTTGTCATCTTTCGATT AATTATATGATACATACCATATATTTTTCATTTATTTCTTATTTTCGTGTGTGTTTGTATCATACGATACATAAGACGAT ATGATTCATGAGTCAAAAAATAGGTCTTCAGATTCACGATTCAACTACCATGATTTTGACAACACAACTAATCAACCATG TGCGTATGGGAATAATAGAACTTGATTTTTCTTTGGTTCCTATGCCCCGCCCCATTAATGTATTTCACCATTTAATTGCT TATGGATTTTGTTAGGATGTGTTCAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCAGGTTAAGA TTTGCAGTATGTTTTTGTATATCATGTTTTTCAGTAATGTCCTTCTAGATTGTTGATCTCTGTTCTACATGTGCAGTGAA AACCAATGATATGATGTTGGTAATATACCTATCGTCTCTCATTAGAAGTGTGATTGCACTTCACAACTTGATTAACAACA AGGTTAGATACACTATCCTGATCTTGCAACAATTATTTTCTTATTTTTCTGATTTTGGCTTTATCTTTATGGTTCATTTT TATATTATAAAAAATCAAATTTAGCAAGGTCGGATAAAACACTATGTTAGTCCTCCATTAAGTAGATTAAAGTTTAGTGA GCTGGGCATTTGAAGTGCATCATGCATGTATTTAAGCTTATCAAGTGAAAGATGTTAAATCATCACTGATTTACTGTGAA TCATGACTTCCAATGTTGGAATATAATTTCAGATGCTCAACAAAGAACATGAAAGGGAAGAAGACTCGAAAACGGTACCA GTGCCAAGTGCAGCTGCGTAAGTTTGAGGGGTTGTATGTTTGCAGCACGAGTAGCCATGCAATTGAATACATGGACTGAT ATTGTTGCTCCTCCATCACTTTTGTTGATCTTCTTTAACTTCACTACATGGGTTAGAGAAAAACGCATAACATGGAATGA TGATCCTTTATACACTCTTCCCGTTCTTTATTCTTGTATTTTATTCACTATGCAATACTCTGCTCATTTTCTTTGTTTGG TAGCTTTGTTAACAAGCATTTGAGGACTAATTATTGAAAACAAATTGATTAGGATATCAGAAATGAAATCTTTGTCACGG TTTTTTCTGTTTATCTTCTCACCTCTCGACCGAGTAACCGTTTAGATGGTTAACTAAAACAAGTCCTGTGGTGTAAGTTG CAACTCAGGATAAATCATACTAAATTACTAATGCCACCGTGTAATTCTGAACGAATAGAGTGAACTCTAACGGAAGGAAA GGATTTGGTCCAGCTTGAGAAAATTAATATATTGGTATCGTTATTGTACATATAAGTACATGTTTTAGAC
CDS sequence (LotjaGi6g1v0070800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGTGATAAAGACTCAGCAAGTATCATCTCGACCGATCGAGAAGGTGGTGGTTCACCCGCTAGTGCTTCTGAGCAT CGTCGACAACTACAACAGAGTCGCCAAGGACACACGGAAGCGCGTCGTCGGCGTCTTGCTCGGTTCCACTTTCAAAGGCA CCGTCGACGTTTCCAACAGCTACGCCGTTCCCTTTGAAGAAGATGACAAGGATCCAAGCATCTGGTTTCTTGACCATAAT TACCATGAATCAATGTTCTCCATGTTTAAGAGAATAAATGCTAAGGAGCATGTCGTCGGGTGGTATAGCACTGGTCCAAA ACTGCGTGAAAATGACCTTGACATTCATGGACTATTCAATGACTATGTACCAAATCCTGTTTTGGTTATAATTGATGTTG AACCTAAGGAGTTGGGAATTCCAACAAAAGCATACTATGCTGTGGAAGAGGTTAAAGAGAATGCTACCCAGAAAAGCCAA AAGGTCTTTGTGCATGTGCAATCAGAAATTGCTGCTCATGAAGTTGAGGAGATAGGAGTGGAGCACTTGCTTAGGGATGT GAAGGATACAACCATTAGCACCCTTGCAACAGAGGTAAGTGCAAAACTTACAGCCTTGAAGGGTTTGGATGCAAGACTTA AAGAAATAAGGGGTTACCTTGACCTTGTTATTGATGGAAAGCTTCCACTAAACCATGAGATCTTGTACCACTTGCAGGAT GTGTTCAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCAGTGAAAACCAATGATATGATGTTGGT AATATACCTATCGTCTCTCATTAGAAGTGTGATTGCACTTCACAACTTGATTAACAACAAGATGCTCAACAAAGAACATG AAAGGGAAGAAGACTCGAAAACGGTACCAGTGCCAAGTGCAGCTGCGTAA
Protein sequence (LotjaGi6g1v0070800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDVIKTQQVSSRPIEKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSTFKGTVDVSNSYAVPFEEDDKDPSIWFLDHN YHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHGLFNDYVPNPVLVIIDVEPKELGIPTKAYYAVEEVKENATQKSQ KVFVHVQSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSAKLTALKGLDARLKEIRGYLDLVIDGKLPLNHEILYHLQD VFNLLPNLNVADLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHEREEDSKTVPVPSAAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 263 | 263 | - | – | |
| PANTHER | 2 | 309 | 308 | 2.9E-200 | – | |
| PANTHER | 2 | 309 | 308 | 2.9E-200 | – | |
| Gene3D | 9 | 193 | 185 | 4.0E-75 | – | |
| CDD | 15 | 295 | 281 | 0.0 | ||
| Pfam | 15 | 124 | 110 | 9.3E-30 | ||
| SMART | 16 | 150 | 135 | 3.2E-27 | ||
| ProSiteProfiles | 17 | 154 | 138 | 19.275 | ||
| Pfam | 174 | 285 | 112 | 5.8E-37 | ||
| Phobius | 264 | 284 | 21 | - | – | |
| Phobius | 285 | 309 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Proteasome regulatory particle | A multisubunit complex, which caps one or both ends of the proteasome core complex. This complex recognizes and unfolds ubiquitinated proteins, and translocates them to the proteasome core complex. |
Expression pattern of LotjaGi6g1v0070800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…