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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0079000 |
| Transcript ID | LotjaGi6g1v0079000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ferritin; TAIR: AT2G40300.1 ferritin 4; Swiss-Prot: sp|Q948P6|FRI3_SOYBN Ferritin-3, chloroplastic; TrEMBL-Plants: tr|I1MYZ8|I1MYZ8_SOYBN Ferritin; Found in the gene: LotjaGi6g1v0079000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:15020549..15023794) extracted from Lotus japonicus Gifu genome v1.2.
TAACATTGACATCTTTTTCCTTTTCCCCAATAATGAAAACATTTGGAAGCCATACCATTTATAACAACAAGCAACCCAAA CACTATAGGATATTTTGCGAGAGATGAACAGAACCAGCTTTAATTTCGTAATTAAGAGAAGAAAGATTTTATTTTTTTAA ATATAAATTTCATTAGATTTTAATTATTATTAAATATGACATAGATTATGTCAGCAAGTGATTGCATACTACTAAATATG ATTGTCGGAGCTCCACCCTCCGGCGAGGATAAAAGCCCCATTTGATATAAACGCTGGAGTATATCACTAATTATTTTTCG ATTGATGGACTAAAATCGAATTCATATACAAATTTGATTTGATGATTAATCCAAAAAAAAAAAAATGTTTTCTCCAACAA AACAAAACGGGTCTTAGATATTTTCGCGGAAAAAGGAGAAGGAGAAGCATCCCGACCACGAATTACGCAACACACGCACA TACACTCCGAACTGAACCCTCTTTCTTCATTCATTCGTTCCCTGTTTTTGCTCAACAACAACCATGCTCCTCAGAGCAGC TTCCTCTTTCTCTCTTCTCAACTCCAATGGCGGCGACCATCTTCTCCCCCCTCTGTTTTCCTCTTCCGTTTCACCCAAAA CCTTTCTCCCCTGCGCCACCAAGGGCTCCAACAACCGCCCCCTAACCGGCGTCGTTTTTGAACCCTTTGAAGAGGTCAAG AAGGAGCTCGACCTTGTTCCCACTGTTCCTCAAGCTTCCCTTGCTCGCCAGAAGTTCGTAGATGAGTGTGAGGCTGCGAT TAACGAGCAGATCAAGTGAGTCCCTCTATAACCCTCTTTCAAAGTTTTCTTCTTTAGTTTCTTTAACTTCAAAAAATCAA ACTTTTTTGTGTTTTTTGAAGTTTTAGTGATAACCCATTTCTAATTTGTCAACAAAATTTAATGGCTATGAGATTCAATG TTTATCTGTTTCTGGGTCTATGTTGTTTTGTTGGGTTTGAATTTTCATTTGCTTGGTTCTAATTTATGTTTTTTTTTTTT TTTGCAGTGTGGAGTACACTGTTTCGTATGTTTACCATGCAATGTTTGCCTACTTCGACAGGGACAATGTTGCGCTTAAG GGTCTTGCCAAGTAATCAATTTATTTGGTTATCTTTGGGTTTTGTTCATTATTTTGATTTGTCTTGTCAGGAGTGGTTAA TGATTGTGATGATTACAGGTTTTTCAAGGAGTCAAGTATGGAGGAAAGGGAGCATGCTGAAAAATTGATGGAGTATCAGG TATAGATTACAGTTTCTAATCACATAGAATATGGTGTATTGATAAAAGATGTCAGCTTTCAGTCTTGGATTTCAAAAAGT ATGTTCAATTCTTTTTCTGTGTGTTAATTTAACTTTCAGAACAAACGGGGTGGGAGAGTGAAGTTGCAGTCTATAGTGAT GCCTCCTTCTGAGTTTGAACATGAGGAAAAGGGAGATGCGCTATATGGTTAGTGTGTCTCTTCATTTTATTTTTTTGCTT GTTTTGTAATGTAAAATAGTATAACTTCTCTTTTGATGCATTTTGGTTTGAATGTTTTAGTTTGTTGAGTCTTAAAAATT TAGAATTTGAAAACATTGGGAGATCATGAGTAACAACTAGCAAGTACATAATAAAATGCCTAAATGAATAAGATTCTCGG CAACTCCTCGATCACTTTATTCCAATTGCATATTTTTTTCAGTATCATGTTCCTTCAATGATGCTTCCTAATCTTCAGCC CGATCACTTTGATGAAATATTCTATAAAATAAAGTCTGTGTGCATTTTACCTTTATCTTGTTTGCTAGATTGTTTGGATC CACGGACAAGCCTCATAGAATCACTTCTCCTTCCACAAAAGCTACTTTTCCTGTACACATCTCTCTCTAACACTACTCAT AGTAGCTTTTCCTTTACTTGCATCTCTTTCAATGATAAATAGGTCAAACCCACTTTCTGTTGGGAAGTACATTGTTTCTG ACTAAAACTTTGAATACAAATAAAGAACTATGCAACACATGATGTAAAACAACCTTGCATTCAAAGCTTTTGCTTTACCT GATGATCTTCTCTGGTGAATTTTTTATATTTGGCACTAAATGTATTTTTCCTTTTCTTTTTTGCTGCAGCAATGGAACTT GCTCTGTCATTGGAGAAGCTAACAAATGAAAAGCTCCTTAACTTGCACAGTGTAAGTCAAGTTTTTATTGTCTTGGCTTT GGATTTACGGCATCTGTCGTATTTCAGTTTGCTTCATTCTGTGTTTACTTCGATGTTGTTATAAAGGAAAACCATTTCTT TGAACTTTTTTGACAGGTTGCCTCAAAGAACAACGATGCGCAGTTGACAGATTTTATTGAAAGCGAGTATTTGGGTGAAC AGGTATATAGTAGTTTGGGGTTGCAATGATGGAAACTTTTTACTTATTGGCTACAAGCAGAAGAGTTGAATGCAATTTGT AGATGGTAGCAAGGAAGATTTTGTGAGGATCTAAACTTTGCACTTCTTTTGTTTTATGGTAGGTGGAATCTATTAAACAA ATCTCGGAGTACGTTGCTCAGCTTAGAAGAGTTGGCAAAGGACATGGTAAGAATTTCTAATTCAGCTATCATAAGCAACT TAGTAGAATTTATGAATATTCTTTGTGCTTTCAAAGAGAGAAATTATAGTCTCTATAAGGATTAAAGAAATCTTGATGTT ATGTTTTACTTCATGGCTTCAACTTTCAGGTACCTGGCACTTCAATCAGATGCTGCTCCAGGACGGAGTTGCTGCTTGAT GATTTACACTTTCGATCTCACCCCTTTCTTGTTAGTCTGTCCGTTTGAGGATTGAACTTTGGTTTAAAAATGTCATCAAT ATCATGTGGTTCATTTATTGGTTGATCATGACTGTTGGTAAATCTTCTAATACAAGCGTCTAATAGAAGAAATATTGTGT TAAAAAGAGAACGTTTCTGCCCGTTCCATTTTATGATAAAAATAAAACGTTTTTAGAGAAACTGTATATTGTGCAATGCG TTTCTATATTTTCGTTGAATTTTTTTAGGAATTTGGAAATTCTCTAACCGAGGTGATCAAAATTTGAGGGAAAAAGATAA GTTAATCATGATTAGAAGTTTCAAGAAGACATTTGAATAGAGGTAATTGAAAGTCAAGGGAAAATGAAGCTATTTCTGTA TGCACTATTTTGTAACATAATTTTAGGCTTAATTGCACATTTGCTC
CDS sequence (LotjaGi6g1v0079000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCCTCAGAGCAGCTTCCTCTTTCTCTCTTCTCAACTCCAATGGCGGCGACCATCTTCTCCCCCCTCTGTTTTCCTC TTCCGTTTCACCCAAAACCTTTCTCCCCTGCGCCACCAAGGGCTCCAACAACCGCCCCCTAACCGGCGTCGTTTTTGAAC CCTTTGAAGAGGTCAAGAAGGAGCTCGACCTTGTTCCCACTGTTCCTCAAGCTTCCCTTGCTCGCCAGAAGTTCGTAGAT GAGTGTGAGGCTGCGATTAACGAGCAGATCAATGTGGAGTACACTGTTTCGTATGTTTACCATGCAATGTTTGCCTACTT CGACAGGGACAATGTTGCGCTTAAGGGTCTTGCCAAGTTTTTCAAGGAGTCAAGTATGGAGGAAAGGGAGCATGCTGAAA AATTGATGGAGTATCAGAACAAACGGGGTGGGAGAGTGAAGTTGCAGTCTATAGTGATGCCTCCTTCTGAGTTTGAACAT GAGGAAAAGGGAGATGCGCTATATGCAATGGAACTTGCTCTGTCATTGGAGAAGCTAACAAATGAAAAGCTCCTTAACTT GCACAGTGTTGCCTCAAAGAACAACGATGCGCAGTTGACAGATTTTATTGAAAGCGAGTATTTGGGTGAACAGGTGGAAT CTATTAAACAAATCTCGGAGTACGTTGCTCAGCTTAGAAGAGTTGGCAAAGGACATGGTACCTGGCACTTCAATCAGATG CTGCTCCAGGACGGAGTTGCTGCTTGA
Protein sequence (LotjaGi6g1v0079000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLRAASSFSLLNSNGGDHLLPPLFSSSVSPKTFLPCATKGSNNRPLTGVVFEPFEEVKKELDLVPTVPQASLARQKFVD ECEAAINEQINVEYTVSYVYHAMFAYFDRDNVALKGLAKFFKESSMEEREHAEKLMEYQNKRGGRVKLQSIVMPPSEFEH EEKGDALYAMELALSLEKLTNEKLLNLHSVASKNNDAQLTDFIESEYLGEQVESIKQISEYVAQLRRVGKGHGTWHFNQM LLQDGVAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 16 | 16 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 2 | 12 | 11 | - | – | |
| Phobius | 13 | 16 | 4 | - | – | |
| Phobius | 17 | 248 | 232 | - | – | |
| PANTHER | 37 | 245 | 209 | 7.3E-136 | ||
| PANTHER | 37 | 245 | 209 | 7.3E-136 | – | |
| Gene3D | 45 | 245 | 201 | 1.6E-89 | ||
| SUPERFAMILY | 70 | 243 | 174 | 2.63E-64 | ||
| ProSiteProfiles | 76 | 229 | 154 | 43.812 | ||
| CDD | 80 | 239 | 160 | 1.05308E-82 | – | |
| Pfam | 84 | 228 | 145 | 2.0E-34 | ||
| ProSitePatterns | 127 | 145 | 19 | - | ||
| ProSitePatterns | 196 | 216 | 21 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Iron ion transport | The directed movement of iron (Fe) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Biological process | Cellular iron ion homeostasis | Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell. | ||
| Molecular function | Ferric iron binding | Interacting selectively and non-covalently with ferric iron, Fe(III). |
Expression pattern of LotjaGi6g1v0079000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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