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LotjaGi6g1v0079500.2

Overview

Field Value
Gene ID LotjaGi6g1v0079500
Transcript ID LotjaGi6g1v0079500.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description ATP-dependent RNA helicase-like protein; TAIR: AT5G05450.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9FLB0|RH18_ARATH DEAD-box ATP-dependent RNA helicase 18; TrEMBL-Plants: tr|G7J2C2|G7J2C2_MEDTR RNA helicase; Found in the gene: LotjaGi6g1v0079500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:15145122..15150340) extracted from Lotus japonicus Gifu genome v1.2.

GATTCTTCCGAGTTCCCAAACAAAGCGTTAACCAGCACGCGTTTCTCCGAGCTGAACCCGCCACTATCTGAGCCGGTTCT CCAAGCCCTAACAGACTCCGGGTTCGACTTCTGCACCCCTGTTCAAGCCGCCACGATTCCTTTGCTATGCAGCTTCAAGG ACGTCGCCGTCGACGCCGCCACCGGTTCCGGCAAAACCCTAGCTTTTGTCCTCCCTCTTGTTGAGATTCTTCGCCGCTCT TCCCCTAAACCCAAGCCTCACCAGGTTCCTTCCTTCATATTCTCATTAGAATTCGAGATTACGATTTTCAATGCACACAC TTGTTGCCCAACTGAAAACCAAACAGGCTCGTAGTGTATGTTAGTCTTTTTTTAATTTTAATGGAGTAGTGTATGCTAAT TCAAAATTATTTTGTTGAGCTTGATTGTGTTTGGGTTAAGAATTTTTATCAAAAATAAATAAAATAATTTGGTTTCTCAT TGTAATGTGTTCAATCATTTTTACCGTTGGTCCGTGTGGAAGAGGCTCGGGTAAGCATGTGATCCTGAGTTCGATTCCTG AATCCATGTGTACGAAAATTCCTGAATCCATGTGTACGAAAAAAACAAAAAAGGTTGGGAGTGGTCCCCACTTTGGTGCC GGGCCGTACCCCGGAGTTTAGTATTTCACCTGTCGGGTGGGAGGATACTTTGATAAACCGAAAAATGTGTTCAATTTTTG TTTATGCTTTTTGTTATTTGTAGGTACTAGGAATAATTATATCTCCTACAAGGGAGCTATCATCCCAGATATATCATGTT GCACAACCTTTCATTTCAACTTTAGTGAATATTAAGTCCATGCTCCTCGTTGGTGGAGTGGATGTAAAAGCAGACATGAA GAAAATTGAGGAAGAAGGAGTGAACATATTGATCGGCACACCTGGGCGGTTACATGACATTATGAATCGGATGGATATCT TGGATTTTAAAGAACTTGAGGTATTGGTTTCGCTATTGACTTCCATGGATGACTTTGGTCATGCTGAAAAAGTAATTTTG AATCCATGCTTTAAGATCCATTGTCTTTGGAATTTATGCATTGGCAGAGGGCTACAGGTTCCCGGCTTCTTGCAGTTATG TTATGGACTAGCTGCAGCTGGAAAGTTTGACTGGAATTGATAATGTCTAACTTGATGTACTTTTTTGCTAAATCAATTAG TTGACATTATTGTGATTATCTTTTCTCTTACAGATATTGATTTTGGATGAGGCTGATAGACTCTTAGATATGGGATTTCA GAAGCAGTTAACTTCCATTATAACTCAGTTGCCCAAGCTTCGTAGAACTGGTTTGTTCTCTGCTACTCAAACTGAGGCTG TAGAAGAGCTTGCTAAAGCAGGATTGAGGAACCCTGTGCGGGTTGAAGTTCGAGCAGAAACTAAAAGAGCAAATGATCCT GCAACAGCAAAACAACTAGAATCTTCCAAGACACCTTCAGGTCTTCACATTGAGGTACCACATACGTGGCATGCCTGTGT GCTGCATATTAGATGTAACTTTGCTATCTGTTGATTCCAAACTTACTCTTTCATAGTAATGTAATTTCTTCAATAATTTT GGGTAATCCTGCAGCTCATCTCGGCCTGGCATTCTTACTCGAATCGATATAATATGTTTCATGTATTTCTATAAGATTCA CTATACGGTTATTGCTCACCCTTTCTTATATATTCATTCTCTTATTTTCCTTGAGATTGCAGTACTTGGAGTGTGAGGCA GATAAGAAGCCATCACAGCTAGTAGATTTCCTTGTTAAGAACCGCTCTAAAAAAATTATAATGTGAGTTTCACTTTATTA ATAATTCATCATGTGATTTGAGTGGTTGAAGAATAGTTTATCAAACTCAAAGCATTGCTTTGGCTCTAATGCAGATATTT CATGACTTGTGCTTGCGTTGACTTTTGGGGAACTGTCCTTCCTCACATTTCTGTTTTAAAAGGCTTCTCATTGATCCCTC TTCATGGAAAGATGAAGCAGGTATAGATTTGGCTGTTAGCATTTGTCAAAATTAAAGTGTACTATTATGCAAATTAACAT TGTGTTTCCAAAAGAACACGGTACCATGTTAAACAACCAATTATTCCAAAAGCTTAAGCTGTTGAGTAAGGGTCACATGA ATGGTTTTATATTATATTCTAACATTACTCATTATTATTGTTGAACCTTATAACTTGTATTAACTGTCTATTTATTTATT CTTTCCGTCTAGACTGTCAGGGAGAAAGCACTTGCTTCATTTACATCCCTTTCAAATGGAATTCTTCTATGTACCGATGT TGCAGCACGTGGACTTGACATACCAGGTGTAGATTGTATAGTGCAGGTAGCTCTGTGACCATATTGATTTTACTGTTGTG TCCACTGATTGTGTTGCATCTTCTTTTGTTCTCTATCTTTTGGTTGGCAAAGTATACTATACTTGGTGGTCCAGTGGTCC ACATATTTTCTTGATATTTACCATTTTAACGCTTATTTGTATAGAATACAATTAATATATGCCCTGTTGTGGCGCAGTAC GATCCTCCTCAAGATCCAAATGTTTTCATACATAGAGTTGGTCGAACAGCTCGGCTGGGTAAACAAGGTCATGCTGTTGT CTTCTTATTACCAAAGGTATGGTCACAAGTATCATGCTGTAATGGCTTTTGATAATCGACAATTCGACATAGGATTTTTA ATTTTTTGAATTTTATGCTAAAGTAATCTATTTAAATGTGTAGGAGGATTCTTACGTAGAATTCCTTCGTATACGAAGAG TTCCTCTTCAAGAGATTAGATGCTCTGATGATGCGCCTGATGTTGTTCCTCAGGTTTGCTTTTGGCCTTTGTAATCTTAA TTTCTTGCATTGTCATAATATTTGTACAGACAGTGTGAGAATGATAGGAAAAGACACTAAAGAAGAAGAAAGACAGAGTT TATTAAAGGGAACTATAGAATTTCCTGAGTAGTCAAGAGACTCAGGGCTCTCCCTGAATTCCCAATTACAACACTAATCA CAAGATAGAATTTATGTTGATTTCCAATCCGAGAAGTCCGACCCTACCCGATTGATTATACATAAAAAAATGTTTGAAGG CTGAATCCAACCTGAACTGACACTGAAGTAGAAAGAAAGGCTGTGTTCATTGAAGTAAACCATAGAATTTGCTGAATATT CGAGAGACTAAGGGCTCAACCCCAAATTGCCAATCGCAATGCTCGTCAAGAGATCAAGTCCTTGTCTAACTTTTTATTTA TAACATTTTCTCTCACTCAAATTAACTAAAATGTTACGAATTAAATTAAGTAACCAAGAAAGAGGTTACCCGTTATATAA TCCCTTTGTTACACTGGTTAGTGGTTAATAATAGTCATTCCACATTAGATATTAACTAAGTTAATCATTAGTTTACTCTA ATCAATATAATAGTAAGTGGAAATAAATTCCCTGAGAGTAATACTAGCTGAGTAGCTGGTTGCTACCTAGGCTCATGCTG ATATATATTGCTCATTCACTATTTTTTTATTGATTATCTAGATCTTATTGCTATCAAACTGCAAACTGTATACGGAAATA TTTTCAATTTTAATAACATCATGAATCAAAACTTGTTTCAGATTCGTTCTGCTGCAAAAAAGGATCGTGATATCATGGAG AAGGGTGTTAAAGCATTTGTTTCTTACATCCGTGCTTATAAAGAGCATCACTGCTCTTATATTTTTAGGTCTGTAATGTT TATGTATAATAATGTTGATGTCACTAATAATGAAACATCATATTATCCTACCGTTCTCACTCTTAATTGCAGGTGGAGAG AACTTGAAATTGGGAAATTGGCTATGGGACATGGTTTACTGAGACTTCCTTTAGTGCCAGAGGTAAAACAAAACTCTCTT TCCACCAAGGGATTTGAACCAGTTGAAGATATCAATTTTGAGGACATTAAGTACAGGTAAAAACATTTTCATATAACCGT TCTACGGTCAAAGCATTGTCAGAATAATTTTTTTTTTGCTGTAAGATGAAAGCTCATGAATTGATTTATATCTAATCATG CCCTAAGAACCCTTAGGCTTGAAGAATCGGCAATACATAGGGCCACTTGACCTTGTATTGAAAATTCAACTTTTTTTGTT TACAAGATTGGTGGCACGATGGATAAATTCCTGATCACTTGGTTATAGACTCTAGTGCAACCTTCTCTCTCAAAGCATCA TACTATTAGGTGAAGACTTATACAAGGGCAGTTTTATATCTGAGGAACATCAGCTGTACCTAAATCATTTTAAGAAATGA AAATCATACCTAGTGAAAAGCATATCTAGCTTACATCGGTGTTACTTTTTCTGTCATATTTGCCTGAATTGCATAACTTC TTGTGCTTTACTTGATTTGGAGCAAGCTAATATCGAGGACTCATGTTGGAATAATATCAAAAGCTCAAATAGTCTTGGCT TGAACAAGATTAATTATACATGATATTTATTATATTTTATTAAAATTAGATTATAATTAAATTAATTGTAGAATATAATT TGATGTTTTAAATTGAGCTTGAGCTTGAGAATTAAAATTAGGTTGGAGCTCAAGTTTTCGTAAAGGCTCTATTAGATCTC CTTAATTATTTTTAATCTAAATCATGTGTGGGAACTTTTTCTTTAAGCTACTCTTGAAGAGCCTCGATTGGGAAGTTGTT TTTTTGTTTACTTAGTGCTATGTCAAGCTGGATTAAGGGAATATTCAATTCCCCTTTTAAGATGTTAGAATGATGGAAAC CAAAGTTCTTGCCACTTGAGATTCACGGTTGAGTTTAACAAGAATGTTCGGGATTTATGTTACGTGTGTTTCTATGGTCC TTCCAAATATAAATATACCTTTCCTTTGTTCTTGTAAACTCACGTTGTTGGCTTAAACTTATATTATACAGGGATAAATC GAGAGAGAAACAACGGAAGAAGAACCTGCAAGTAAAGAAGGAAGCTAAGGAGAAAGAGCCAAGACCTAAAAAACTAAGCA AAACCCCAAATGCACAAACTGACATGAAGAAGAAAACAGCCAAGCAGAGACGTGCTGAGCAGGACGTTGAAGACGAGGAA GAGTTGATGCATGAATACCGATTGTTGAAGAAATTGAAGAAAGGGACCATAGATGAAAATGAATACGCCAAATTGACAGG CACTGAGGAATTACTTTGA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0079500.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACTTGTGCTTGCGTTGACTTTTGGGGAACTGTCCTTCCTCACATTTCTGTTTTAAAAGGCTTCTCATTGATCCCTCT TCATGGAAAGATGAAGCAGACTGTCAGGGAGAAAGCACTTGCTTCATTTACATCCCTTTCAAATGGAATTCTTCTATGTA CCGATGTTGCAGCACGTGGACTTGACATACCAGGTGTAGATTGTATAGTGCAGTACGATCCTCCTCAAGATCCAAATGTT TTCATACATAGAGTTGGTCGAACAGCTCGGCTGGGTAAACAAGGTCATGCTGTTGTCTTCTTATTACCAAAGGAGGATTC TTACGTAGAATTCCTTCGTATACGAAGAGTTCCTCTTCAAGAGATTAGATGCTCTGATGATGCGCCTGATGTTGTTCCTC AGATTCGTTCTGCTGCAAAAAAGGATCGTGATATCATGGAGAAGGGTGTTAAAGCATTTGTTTCTTACATCCGTGCTTAT AAAGAGCATCACTGCTCTTATATTTTTAGGTGGAGAGAACTTGAAATTGGGAAATTGGCTATGGGACATGGTTTACTGAG ACTTCCTTTAGTGCCAGAGGTAAAACAAAACTCTCTTTCCACCAAGGGATTTGAACCAGTTGAAGATATCAATTTTGAGG ACATTAAGTACAGATTGGTGGCACGATGGGGATAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0079500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTCACVDFWGTVLPHISVLKGFSLIPLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNV FIHRVGRTARLGKQGHAVVFLLPKEDSYVEFLRIRRVPLQEIRCSDDAPDVVPQIRSAAKKDRDIMEKGVKAFVSYIRAY KEHHCSYIFRWRELEIGKLAMGHGLLRLPLVPEVKQNSLSTKGFEPVEDINFEDIKYRLVARWG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24031
1 130 130 9.3E-42 –
ProSiteProfiles
PS51194
1 139 139 17.107
IPR001650
Gene3D
G3DSA:3.40.50.300
1 198 198 4.5E-50 –
PANTHER
PTHR24031:SF2
1 130 130 9.3E-42 –
CDD
cd18787
2 101 100 4.4836E-42 –
SMART
SM00490
11 92 82 2.4E-25
IPR001650
SUPERFAMILY
SSF52540
19 120 102 1.92E-29
IPR027417
Pfam
PF00271
20 92 73 1.4E-21
IPR001650
SMART
SM01178
130 193 64 2.2E-25
IPR025313
Pfam
PF13959
133 189 57 4.2E-20
IPR025313

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0079500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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