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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR025313
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 16 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.663s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0050249.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 27-like [Glycine max] gi|356563121|ref|XP_003549814.1| chr0 17066995 17071627 -
3 domain predictions
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Lj0g3v0298949.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 32-like [Glycine max] gi|356501519|ref|XP_003519572.1| chr0 155380623 155387217 +
3 domain predictions
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Lj1g3v3022240.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 51-like [Cicer arietinum] gi|502086882|ref|XP_004488356.1| chr1 34325854 34332933 -
3 domain predictions
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Lj2g3v2827810.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 18-like isoform 1 [Glycine max] gi|356540003|ref|XP_003538481.1| chr2 36907270 36912438 -
3 domain predictions
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Lj4g3v1774720.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 27-like [Glycine max] gi|356513888|ref|XP_003525640.1| chr4 25200071 25200974 +
3 domain predictions
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Lj4g3v2846270.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 27-like [Glycine max] gi|356563121|ref|XP_003549814.1| chr4 38097820 38102452 +
3 domain predictions
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Lj6g3v0466820.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 18-like [Glycine max] gi|356568033|ref|XP_003552218.1| chr6 4526458 4531774 +
3 domain predictions
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Lj6g3v1164020.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 17-like isoform X1 [Cicer arietinum] gi|502086117|ref|XP_004488114.1| chr6 14246480 14252361 +
3 domain predictions
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LotjaGi1g1v0031700.1
n.a. RNA helicase; TAIR: AT5G54910.1 DEA(D/H)-box RNA helicase family protein; Swiss-Prot: sp|Q9FFT9|RH32_ARATH DEAD-box ATP-dependent RNA helicase 32; TrEMBL-Plants: tr|I1JJ86|I1JJ86_SOYBN RNA helicase; Found in the gene: LotjaGi1g1v0031700 LjG1.1_chr1 4061731 4068781 +
3 domain predictions
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LotjaGi1g1v0031700.2
n.a. RNA helicase; TAIR: AT5G54910.1 DEA(D/H)-box RNA helicase family protein; Swiss-Prot: sp|Q9FFT9|RH32_ARATH DEAD-box ATP-dependent RNA helicase 32; TrEMBL-Plants: tr|I1JJ86|I1JJ86_SOYBN RNA helicase; Found in the gene: LotjaGi1g1v0031700 LjG1.1_chr1 4061976 4068230 +
3 domain predictions
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LotjaGi1g1v0206000.1
n.a. RNA helicase; TAIR: AT3G18600.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9LIH9|RH51_ARATH DEAD-box ATP-dependent RNA helicase 51; TrEMBL-Plants: tr|A0A0B2P7X3|A0A0B2P7X3_GLYSO RNA helicase; Found in the gene: LotjaGi1g1v0206000 LjG1.1_chr1 44787574 44795634 -
3 domain predictions
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LotjaGi1g1v0206000.2
n.a. RNA helicase; TAIR: AT3G18600.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q84T03|RH27_ORYSJ DEAD-box ATP-dependent RNA helicase 27; TrEMBL-Plants: tr|I1N1P3|I1N1P3_SOYBN RNA helicase; Found in the gene: LotjaGi1g1v0206000 LjG1.1_chr1 44788719 44795490 -
3 domain predictions
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LotjaGi4g1v0415000.1
n.a. RNA helicase; TAIR: AT3G18600.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q84T03|RH27_ORYSJ DEAD-box ATP-dependent RNA helicase 27; TrEMBL-Plants: tr|A0A0S3R740|A0A0S3R740_PHAAN RNA helicase; Found in the gene: LotjaGi4g1v0415000 LjG1.1_chr4 79045648 79051406 +
3 domain predictions
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LotjaGi6g1v0079500.1
n.a. ATP-dependent RNA helicase-like protein; TAIR: AT5G05450.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9FLB0|RH18_ARATH DEAD-box ATP-dependent RNA helicase 18; TrEMBL-Plants: tr|I1MYZ5|I1MYZ5_SOYBN RNA helicase; Found in the gene: LotjaGi6g1v0079500 LjG1.1_chr6 15144554 15150463 -
3 domain predictions
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LotjaGi6g1v0079500.2
n.a. ATP-dependent RNA helicase-like protein; TAIR: AT5G05450.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9FLB0|RH18_ARATH DEAD-box ATP-dependent RNA helicase 18; TrEMBL-Plants: tr|G7J2C2|G7J2C2_MEDTR RNA helicase; Found in the gene: LotjaGi6g1v0079500 LjG1.1_chr6 15145122 15150340 -
3 domain predictions
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LotjaGi6g1v0221900.1
n.a. ATP dependent RNA helicase; TAIR: AT2G40700.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q7XJN0|RH17_ARATH DEAD-box ATP-dependent RNA helicase 17; TrEMBL-Plants: tr|A0A0S3RHP0|A0A0S3RHP0_PHAAN RNA helicase; Found in the gene: LotjaGi6g1v0221900 LjG1.1_chr6 52639339 52645684 +
3 domain predictions
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