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IPR025313 is a Domain of unknown function DUF4217.
<p>This short domain is found at the C terminus of many helicases, including some DEAD box helicases. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: DEAD-box ATP-dependent RNA helicase 27-like [Glycine max] gi|356563121|ref|XP_003549814.1| | 25 | ||
| – | PREDICTED: DEAD-box ATP-dependent RNA helicase 32-like [Glycine max] gi|356501519|ref|XP_003519572.1| | 24 | ||
| – | PREDICTED: DEAD-box ATP-dependent RNA helicase 51-like [Cicer arietinum] gi|502086882|ref|XP_004488356.1| | 24 | ||
| – | PREDICTED: DEAD-box ATP-dependent RNA helicase 18-like isoform 1 [Glycine max] gi|356540003|ref|XP_003538481.1| | 25 | ||
| – | PREDICTED: DEAD-box ATP-dependent RNA helicase 27-like [Glycine max] gi|356513888|ref|XP_003525640.1| | 5 | ||
| – | PREDICTED: DEAD-box ATP-dependent RNA helicase 27-like [Glycine max] gi|356563121|ref|XP_003549814.1| | 25 | ||
| – | PREDICTED: DEAD-box ATP-dependent RNA helicase 18-like [Glycine max] gi|356568033|ref|XP_003552218.1| | 25 | ||
| – | PREDICTED: DEAD-box ATP-dependent RNA helicase 17-like isoform X1 [Cicer arietinum] gi|502086117|ref|XP_004488114.1| | 22 | ||
| – | RNA helicase; TAIR: AT5G54910.1 DEA(D/H)-box RNA helicase family protein; Swiss-Prot: sp|Q9FFT9|RH32_ARATH DEAD-box ATP-dependent RNA helicase 32; TrEMBL-Plants: tr|I1JJ86|I1JJ86_SOYBN RNA helicase; Found in the gene: LotjaGi1g1v0031700 | 24 | ||
| – | RNA helicase; TAIR: AT5G54910.1 DEA(D/H)-box RNA helicase family protein; Swiss-Prot: sp|Q9FFT9|RH32_ARATH DEAD-box ATP-dependent RNA helicase 32; TrEMBL-Plants: tr|I1JJ86|I1JJ86_SOYBN RNA helicase; Found in the gene: LotjaGi1g1v0031700 | 24 | ||
| – | RNA helicase; TAIR: AT3G18600.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9LIH9|RH51_ARATH DEAD-box ATP-dependent RNA helicase 51; TrEMBL-Plants: tr|A0A0B2P7X3|A0A0B2P7X3_GLYSO RNA helicase; Found in the gene: LotjaGi1g1v0206000 | 24 | ||
| – | RNA helicase; TAIR: AT3G18600.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q84T03|RH27_ORYSJ DEAD-box ATP-dependent RNA helicase 27; TrEMBL-Plants: tr|I1N1P3|I1N1P3_SOYBN RNA helicase; Found in the gene: LotjaGi1g1v0206000 | 24 | ||
| – | RNA helicase; TAIR: AT3G18600.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q84T03|RH27_ORYSJ DEAD-box ATP-dependent RNA helicase 27; TrEMBL-Plants: tr|A0A0S3R740|A0A0S3R740_PHAAN RNA helicase; Found in the gene: LotjaGi4g1v0415000 | 25 | ||
| – | ATP-dependent RNA helicase-like protein; TAIR: AT5G05450.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9FLB0|RH18_ARATH DEAD-box ATP-dependent RNA helicase 18; TrEMBL-Plants: tr|I1MYZ5|I1MYZ5_SOYBN RNA helicase; Found in the gene: LotjaGi6g1v0079500 | 25 | ||
| – | ATP-dependent RNA helicase-like protein; TAIR: AT5G05450.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9FLB0|RH18_ARATH DEAD-box ATP-dependent RNA helicase 18; TrEMBL-Plants: tr|G7J2C2|G7J2C2_MEDTR RNA helicase; Found in the gene: LotjaGi6g1v0079500 | 13 | ||
| – | ATP dependent RNA helicase; TAIR: AT2G40700.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q7XJN0|RH17_ARATH DEAD-box ATP-dependent RNA helicase 17; TrEMBL-Plants: tr|A0A0S3RHP0|A0A0S3RHP0_PHAAN RNA helicase; Found in the gene: LotjaGi6g1v0221900 | 23 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| cd18787 | CDD | 1 | 6.25 |