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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0084600 |
| Transcript ID | LotjaGi6g1v0084600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ring finger protein, putative; TAIR: AT1G15100.1 RING-H2 finger A2A; Swiss-Prot: sp|Q9ZT50|RHA2A_ARATH E3 ubiquitin-protein ligase RHA2A; TrEMBL-Plants: tr|I3S6G4|I3S6G4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0084600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:16724206..16725450) extracted from Lotus japonicus Gifu genome v1.2.
TCAACAAAGAACATCGCTTTCTCATTAGCTTTTATCTCGTTTATAAATAACACAAATTAAGAAGAGTGTACAAGTTTGAC AAGCATACAGTTAGAGGCGGCTACGCACACCATGGCGTGTTGCATATTTATAAACATTGATTGACAGCAATCTATCTATT ATTCACGAGCAGCAGCCATGAAAGCTCTCACAAAGCTCTTCCAGCAACTTTGCAGCAAAATAATAATCCTATTGACACTC CTGCTAGTAGAGCTCATCGTCCTCCTTTGGAGACTAACATCAGAAAAACGGTCAATCACCACGAAGCAGTACCTTGAGTT CATCGAAGAGAACAACCCCACGATTCGCTACGCGAAAAGGCGGTCGTCATGGTCAGAGCTGGAGCATGTTGTGCCGGATG ATACGGAGTGCAGGGTGTGCTTGTCCGAATTCGAGGAAGGAGAGAAGGTGAGGAGGTTGAAATGCAAGCACACTTTTCAC AAAGATTGCTTGGACAAGTGGTTGCAGGAATGTTGGGCAACATGCCCGCTTTGCAGGAAACAAGTGTTGCCGTGTGATGT CGTATCCAAACATCGTCATTTCCTAAGTCACGAAGAGAATGTGGAGCATCTTCCATATCTGTTATTCGTGTGGCGTGGTG GTAATGGAAGTAACTTCCGTAGATATGTGTGAATCCAAGCCTTCAAGATATGTAGCTAGCTCAAACAACTGCTAAATATA TACCAATTTTCTCTACCTTTTAGTTTATTTATTATTCTTCTTCCTTCAATCAAAAAAGTTTATGTAGATGTATCCTCTGC TTTATGTACATAATTTATATTTAGAAAGTTACTGATAGTATATACCGTTTCAGCTATATAGTATTGGGTTCTGAAGTGGT TGAATTGCTGAAGGGCTGTTTCTGCAATTCTGGCTCTTCTATGCGTGCAACTGGATGTATTTGCTGAGTTTTTACGTCAG TGGATTGGCAGGGTATTGATCTTGTAGCAGCTGTTTTGTTCTAAAGTCTGAGAACTTGATCCTCAATTTAGCTGAATTAT GTAGTAGCATAGCTAGATATATATAGGCTAGTAGATTCAGATTAGTGATCTTTAGATTTGTTTTTGTTGTTCACTCTGTT GCTCTAGTCACTGTATTGTGTCCTTTGGACCTTCTCCTTTTTTCTTGTTCTTCTTCCTTGTAATTACCATGGGTTTGAGG TACCCCTAGTATCTCATCAATACAATTTTACTTACAAAAAAAAAT
CDS sequence (LotjaGi6g1v0084600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGCTCTCACAAAGCTCTTCCAGCAACTTTGCAGCAAAATAATAATCCTATTGACACTCCTGCTAGTAGAGCTCAT CGTCCTCCTTTGGAGACTAACATCAGAAAAACGGTCAATCACCACGAAGCAGTACCTTGAGTTCATCGAAGAGAACAACC CCACGATTCGCTACGCGAAAAGGCGGTCGTCATGGTCAGAGCTGGAGCATGTTGTGCCGGATGATACGGAGTGCAGGGTG TGCTTGTCCGAATTCGAGGAAGGAGAGAAGGTGAGGAGGTTGAAATGCAAGCACACTTTTCACAAAGATTGCTTGGACAA GTGGTTGCAGGAATGTTGGGCAACATGCCCGCTTTGCAGGAAACAAGTGTTGCCGTGTGATGTCGTATCCAAACATCGTC ATTTCCTAAGTCACGAAGAGAATGTGGAGCATCTTCCATATCTGTTATTCGTGTGGCGTGGTGGTAATGGAAGTAACTTC CGTAGATATGTGTGA
Protein sequence (LotjaGi6g1v0084600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKALTKLFQQLCSKIIILLTLLLVELIVLLWRLTSEKRSITTKQYLEFIEENNPTIRYAKRRSSWSELEHVVPDDTECRV CLSEFEEGEKVRRLKCKHTFHKDCLDKWLQECWATCPLCRKQVLPCDVVSKHRHFLSHEENVEHLPYLLFVWRGGNGSNF RRYV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 156 | 156 | 2.7E-64 | – | |
| PANTHER | 1 | 156 | 156 | 2.7E-64 | – | |
| Phobius | 1 | 14 | 14 | - | – | |
| TMHMM | 15 | 34 | 20 | - | – | |
| Phobius | 15 | 33 | 19 | - | – | |
| Gene3D | 34 | 126 | 93 | 7.6E-19 | ||
| Phobius | 34 | 164 | 131 | - | – | |
| SUPERFAMILY | 67 | 126 | 60 | 4.29E-20 | – | |
| Pfam | 77 | 120 | 44 | 9.6E-13 | ||
| CDD | 77 | 120 | 44 | 1.38584E-16 | – | |
| ProSiteProfiles | 78 | 120 | 43 | 12.681 | ||
| SMART | 78 | 119 | 42 | 1.1E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0084600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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