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LotjaGi6g1v0091000.1

Overview

Field Value
Gene ID LotjaGi6g1v0091000
Transcript ID LotjaGi6g1v0091000.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SRG7|B6SRG7_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0091000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:19592591..19593611) extracted from Lotus japonicus Gifu genome v1.2.

GCTCGTACCAAGTAAACTGCTCGTATGTCAACCGGTGGAAAAGTTCCCAGGAAGCAGCTTGCAACCAAGGTTTGTTCTGG AATCATCACCTCAATCCTTATTCTCTTAATTTGTATTGGGTGCTTGAAATTTTGGCCAATGGTTTCATGATTTTGTTTTT TCTACTTTAGGCTGGTCGTAAGTCTGTATCAACCATCGGTGGGATCAAGAAGCCGCATCGTTACCGTCCTGGAACCGTTG CTCTTCGGTCAGTGATCCTTTTCTAGAATCCTTTATATTTTATTGTTTTACTGGGGTTTCCATTTTATTGATTTTTTTAT GTTTACTAATAATTAAATTGTTGTTGATGGAACAGTGAGATTAGGAAGTACCAGAAGAGTACTGATGTGCTGATCAGGAA ACTCCCTTTCCAGAGGTTGGTTCGTGAAATTGCTCAGGACTTCAAGGTAATGTGTAATTACTGATGTGAGATTCAGGTCT TATGTGTTTTTTTTCTTAATCATTGTGACTAAAGTTATGTATTTTTTTCTGTGGTTGCAGACTGACCTGCGTTTCCAGAG TCATGTTGTCCTTGCATTGCAAGAAGCTGCTGAGGCATACCTCGTTGGACTCTTTGAGGACACCAACTTATGTGCCATCC ATCCTAAGCGTGTCACTATCATGCCTAAGGATATCCTGTTAGCAAGGAGGATTCGTGGTGAGCATACTTGATGTGGTACG TTTGGTGCTGGTCATATGGGGTGGCTGTGGAAGTGTTTTGTTATTTAGATTTCTTTTTGTTGAAGCTTATTAGTGGTATA GTTGTTTACTAGTAGTCTCATCAATTGTGGTAGGAACATACTGCCATAATTTGTGAAGCTCGGATTATTAGTAATTGTGG AGTTTGGTTCTCTGGTTCTGTGAATTGCTATCGTAATTTCTGGACATGCAGGCATTTGGTAATTGTATCTGACAATCTTT TGTTGCCATCTAAGATAGCGGACCTAGTTTATTATGATGCTTGATTGTTCATGTTTTGGGA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0091000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCAACCGGTGGAAAAGTTCCCAGGAAGCAGCTTGCAACCAAGGCTGGTCGTAAGTCTGTATCAACCATCGGTGGGAT CAAGAAGCCGCATCGTTACCGTCCTGGAACCGTTGCTCTTCGTGAGATTAGGAAGTACCAGAAGAGTACTGATGTGCTGA TCAGGAAACTCCCTTTCCAGAGGTTGGTTCGTGAAATTGCTCAGGACTTCAAGACTGACCTGCGTTTCCAGAGTCATGTT GTCCTTGCATTGCAAGAAGCTGCTGAGGCATACCTCGTTGGACTCTTTGAGGACACCAACTTATGTGCCATCCATCCTAA GCGTGTCACTATCATGCCTAAGGATATCCTGTTAGCAAGGAGGATTCGTGGTGAGCATACTTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0091000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSTGGKVPRKQLATKAGRKSVSTIGGIKKPHRYRPGTVALREIRKYQKSTDVLIRKLPFQRLVREIAQDFKTDLRFQSHV VLALQEAAEAYLVGLFEDTNLCAIHPKRVTIMPKDILLARRIRGEHT
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:1.10.20.10
1 127 127 2.1E-67
IPR009072
PANTHER
PTHR11426:SF211
2 126 125 6.0E-87 –
Pfam
PF00125
2 123 122 3.6E-46
IPR007125
PANTHER
PTHR11426
2 126 125 6.0E-87
IPR000164
SUPERFAMILY
SSF47113
2 125 124 1.45E-48
IPR009072
PRINTS
PR00622
8 22 15 3.5E-67
IPR000164
PRINTS
PR00622
25 46 22 3.5E-67
IPR000164
SMART
SM00428
25 127 103 1.4E-68
IPR000164
PRINTS
PR00622
49 66 18 3.5E-67
IPR000164
ProSitePatterns
PS00959
58 66 9 -
IPR000164
PRINTS
PR00622
71 89 19 3.5E-67
IPR000164
PRINTS
PR00622
89 105 17 3.5E-67
IPR000164
PRINTS
PR00622
105 126 22 3.5E-67
IPR000164

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000786
Cellular component Nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Subterm of
Part of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0046982
Molecular function Protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0091000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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