Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi6g1v0091300.4

Overview

Field Value
Gene ID LotjaGi6g1v0091300
Transcript ID LotjaGi6g1v0091300.4
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0091300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:19698606..19699319) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCTCGTACCAAGCAAACTGCTCGTATGTCAACCGGTGGAAAAGTTCCCAGGAAGCAGCTTGCAACCAAGGTTTGTTC TGGAATCATCACCTCAATCCTTATTCTCTTAATTTGTATTGGGTGCTTGAAATTTTGGCCAACGGTTTCATGATTTTGTT TTTTCTACTTTAGGCTGGTCGTAAGTCTGTATCAACCATCGGTGGGATCAAGAAGCCGCATCGTTACCGTCCTGGAACTG TTGCTCTTCGGTCAGTGATCCTTTTCTAGAATCCTTTATATTTTATTGTTTTACTGGGGTTTCCATTTTATTGATTTTTT TATGTTTACTAATTATTAAATTGTTGTTGATGGAACAGTGAGATTAGGAAGTACCAAAAGAGTACTGATGTGCTGATCAG GAAACTCCCTTTCCAGAGGTTGGTTCGTGAAATTGCTCAGGACTTCAAGGTAATGTGTAATTACTGATGTGAGATTCAGG TCTTATGTGTTTTTTTTCTTAATCATTGTGACTCAAGTTATGTATTTTTTCCTGTGGTTGCAGACTGACCTGCGTTTCCA GAGTCATGCTGTCCTTGTATTGCAAGAAGCTGCTGAGGCATACCTCGTTGGACTCTTTGAGGACACCAACTTGTGTGCCA TCCATGCTAAGCGTGTCACTATCATGCCTAAGGATATCCAGTTAGCAAGGAGGATTCGTGGTGAGCATACTTGA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0091300.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTCGTACCAAGCAAACTGCTCGTATGTCAACCGGTGGAAAAGTTCCCAGGAAGCAGCTTGCAACCAAGGTTTGTTC TGGAATCATCACCTCAGCTGGTCGTAAGTCTGTATCAACCATCGGTGGGATCAAGAAGCCGCATCGTTACCGTCCTGGAA CTGTTGCTCTTCGTGAGATTAGGAAGTACCAAAAGAGTACTGATGTGCTGATCAGGAAACTCCCTTTCCAGAGGTTGGTT CGTGAAATTGCTCAGGACTTCAAGACTGACCTGCGTTTCCAGAGTCATGCTGTCCTTGTATTGCAAGAAGCTGCTGAGGC ATACCTCGTTGGACTCTTTGAGGACACCAACTTGTGTGCCATCCATGCTAAGCGTGTCACTATCATGCCTAAGGATATCC AGTTAGCAAGGAGGATTCGTGGTGAGCATACTTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0091300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MARTKQTARMSTGGKVPRKQLATKVCSGIITSAGRKSVSTIGGIKKPHRYRPGTVALREIRKYQKSTDVLIRKLPFQRLV REIAQDFKTDLRFQSHAVLVLQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGEHT
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11426:SF224
1 143 143 7.5E-92 –
PANTHER
PTHR11426
1 143 143 7.5E-92
IPR000164
Pfam
PF00125
1 140 140 4.6E-50
IPR007125
Gene3D
G3DSA:1.10.20.10
2 144 143 1.5E-71
IPR009072
SUPERFAMILY
SSF47113
2 142 141 5.97E-50
IPR009072
PRINTS
PR00622
3 17 15 4.0E-54
IPR000164
SMART
SM00428
42 144 103 3.1E-72
IPR000164
PRINTS
PR00622
66 83 18 4.0E-54
IPR000164
ProSitePatterns
PS00959
75 83 9 -
IPR000164
PRINTS
PR00622
88 106 19 4.0E-54
IPR000164
PRINTS
PR00622
106 122 17 4.0E-54
IPR000164
PRINTS
PR00622
122 143 22 4.0E-54
IPR000164

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000786
Cellular component Nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Subterm of
Part of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0046982
Molecular function Protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0091300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…