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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0096900 |
| Transcript ID | LotjaGi6g1v0096900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectate lyase; TAIR: AT1G67750.1 Pectate lyase family protein; Swiss-Prot: sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5; TrEMBL-Plants: tr|H2DL22|H2DL22_LOTJA Pectate lyase; Found in the gene: LotjaGi6g1v0096900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:21008454..21011906) extracted from Lotus japonicus Gifu genome v1.2.
ATTACTAATCAGTGTAATTTGCTTATTAAAGTAATGGAATAGAAGCCCCCTAATAGTGTGTAATTGACTTTAGAAGAAAG ATTCCTCGTAGGGAAGCATTTCTAGGCTCTAAACCCACAAATCATGGTTAGTTAAGAAGCATGTTTTTTAATCAAGAAGA ATTCAGGACCTTTCAGTTTACTACCTATATAACCTTGATTTCCATCACTTTTGGAAAACAAGTTCTATAGTTGTATATTT TCCTGCTTATTAACATTCCTCTTAGAAATCATGGCATTTCCGATCATACTGATGTTCTTGCTTCTTACACCAACTTTGAT CTTTTCTTCCCCAGTCCAAGATCCTGAATCAGTTGTCCAGGAAGTTCAGAAGTATGTTATCTTTCATATATCATTCACCC CACAATTGGACCCTGTCTTATTCTACGAAAAATCTTGTGTTGGAAAGCAAGAAGTTCCCCTGTCTTTTCTTTTATTTCTT TTCTCATATCAATTGGTTTATACTATTCTTTTAGTAGAAAATAGCGACATAATTATGGTATTTACAGATAACATTTGTTG TATAAAACATGGTATTTTTTCAAAAAGCTCCTATGCCTATGCTTTGTTGAATTTGATAGTGCACAAACCCACCTGGGGAC CCAAAAAACAAGGCTTTTAGACTTCTAATACCCAAACATGTATCTCTCTTTTTTCCTCTTAATCCCACTAATGTGAGGCC TTATAGTTTCAAAACACTCTCTTGAATAACTCGAATATCATATTTAACAAGTAAAATTATTTTAAAGAATAATACACCAG TTATTAAATTTAAATTTGTAAGTCAATTATGCTTTTCATCTTTCTAACTTTTGACATTTTCTCTTGGTTAATTGAGTTCA TTATACAAATCTATTTCTTTATTACATTTTTTAGAAAACACATGTAAAAATGTGCAATCAAAGAATTACTGCAAGAAAGT ATGTTGCATGATGCATTAACATTGGGGAATAAATTAGAATAGAAAAGGTTACATGTAAGCATCCAAAGTGAGGAATAAAG AGAGAAAACGAAGTAAAAAGATGTCTTAATATAAATAAAAATTTGGTTCACATAGTGTCTATTCTTTTGAGTGTCAAGAG TGATTTAAAATATTCTCATGAATTTCATCTAATAGTCCCGATTATAAACACCCTAATAGCAACATCCCACATACACGTCA ATTTTTCACTATCTCTCTTCTTATCACATCGTATCATATATCACATCTATATTTATGATTTATCCCTTCATTTCTCTCAC TATTATTTGGGTTTTAGACATCCAATACTATCTACCAAACATTGTTCATCACCTAAATAGATGCAGTGCAACATGAGTCC TTGACCACATTGCATTTATATTATTTGGTTTTTCTTTTTCACAGGAGCATCATTGAGCATAGGAGAAAATTGGGTTTTTA TTCATGTGGAACAGGCAACCCCATTGATGATTGTTGGAGGTGCGACCCCAATTGGGAAAACAACCGCAAACGGCTAGCAG AATGTGCAATCGGGTTTGGCAGACATGCCATTGGAGGAAGGGATGGCAAGTTTTATCTGGTCACGGACCCCAGTGACCAC GCAGTGAACCCCAAGCCAGGAACTCTAAGACACGCTGCAATCCAACAAGAGCCCTTGTGGATCATATTCAAGCATGACAT GGTGATCAAGCTCGAGATGGATCTCGTTATGAACTCTTACAAGACCATTGATGGTAGAGGAGCTAATGTCCACATTGCTG GAGGGCCTTGCATCAAGGTGCAGAGAAAGACCAACATCATAATCCATGGCATTAGTATCCATGACTGCAAACGCGGTGGC AGTGGGTACGTGAGCGACTCTCCTAACCATCAGAGCTGGAGAGGACGATCAGACGGTGATGGGGTCACGATTTATGATTC GAGCAATGTTTGGGTGGACCATTGTTCTTTGTCGAACTGTTTTGATGGGTTGATTGATGTTGTTCATGGATCAACGGCTA TTACCATTTCGAACAATTACATGACGCACCATAACAAGGTCATGCTCTTGGGTCATAGTGATTCCAATAAAGAGGATAAA AAGATGCAGGTTACGATTGCTTTCAACCATTTTGGAGAAGGACTTGGGGGAAGAATGCCCAGGTAGGTGGTAGTTGTTCA ATATACAAAAATAAGCCTAACATCCTGATTTAAATTGACTATGAGCTCATTCCAATGCGGATCAAAAAGTATTTATTGGA GGCTATCTAGTGCATTTTTAATAAAGAACTCCAATAAATGTTTTTTACTTTGTATGTAGATAGGCTACATGTCCAAAAAC ACATGACAACACATGAATTGTAAACTTGGCTTGTTATGCATTTTTTTTCTTGGAAAAAGGCAACAACTTGAATACTTCTA CCCAAATTTGCAGGTGCAGGTTCGGATATTTCCACGTGGTGAACAATGATTACACACATTGGCAGAAGTACGCAATAGGT GGGAGTTCATCCCCAACTATTTTCAGCCAAGGCAACAGATTTCTTGCTCCAAATGATGAAGAACACAAAGAGGTCAGAGA TACATGTAAAGAAATGTGGATTTTTTATTGGTTAAAATTCACATGGTTTTCACTAAATTAGAATTGATACTCATACTTTT GGTGGATCTTACATGAATTTCAATTAATCAATGAGAGAGGGTTGGAAATAGAGTGTTAAAGTGAGTGTTGTTAGCATTTT TCATAAACTGAATCATTTTGAAACCGTGATAATATATTTGCATGTATTAACCAAATTATGGTATTCTTTAAATTTTGAAG AAATAATTTATCAATTAACGGTGATGACTTATTTTATGGGTGGCTTCAGATCACCAAACATTTTGGATCATCGGAGAATG AATGGAAGAACTGGAACTGGAGGTCTGAAGGGGATTTAATGCTGAATGGCGCCTTCTTCAGTCCGTCCGGAGCCGGTGCA ACTTCTACATATGCTAGGGCGTCAAGCATGGAAGCAAGACCACCAATGCTTGTGGCTTCAATGACAGCAGGGGCTGGAGC TCTTAGATGCAAGAAAGACTACATGTGCTACTAGATTACTACTACACTATGCTAAGAGAACTATTAAGTATGGTCCAGAT TTTAGGCATGCCAAAATTTAGTTTACTAGTGCAAAATGTGTAGCTAGCTATATCAGTTGTGACTTCATTCCCTTGAAGGG ACAATGAAGAGTATAAGGGTTCTGTAAAGTTGAAATTTGAATATAGAATATTAGAAATGTTTGTTATGTTGTCTCTATTG GCAAATATGCAATGACCTCCATAGTCCATACTACATGCCTTAAATTCCTGTTGATTAAAAGGTAAAAAATGGCCCTCCGT ATTTACCATGAAAAGGGAGGGATAACCTATAATGTTGGGTCTAAAAAAATTGTTGCAAAATATAATAAGAAGTCAGGCCA TTGTCGTTTCATC
CDS sequence (LotjaGi6g1v0096900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATTTCCGATCATACTGATGTTCTTGCTTCTTACACCAACTTTGATCTTTTCTTCCCCAGTCCAAGATCCTGAATC AGTTGTCCAGGAAGTTCAGAAGAGCATCATTGAGCATAGGAGAAAATTGGGTTTTTATTCATGTGGAACAGGCAACCCCA TTGATGATTGTTGGAGGTGCGACCCCAATTGGGAAAACAACCGCAAACGGCTAGCAGAATGTGCAATCGGGTTTGGCAGA CATGCCATTGGAGGAAGGGATGGCAAGTTTTATCTGGTCACGGACCCCAGTGACCACGCAGTGAACCCCAAGCCAGGAAC TCTAAGACACGCTGCAATCCAACAAGAGCCCTTGTGGATCATATTCAAGCATGACATGGTGATCAAGCTCGAGATGGATC TCGTTATGAACTCTTACAAGACCATTGATGGTAGAGGAGCTAATGTCCACATTGCTGGAGGGCCTTGCATCAAGGTGCAG AGAAAGACCAACATCATAATCCATGGCATTAGTATCCATGACTGCAAACGCGGTGGCAGTGGGTACGTGAGCGACTCTCC TAACCATCAGAGCTGGAGAGGACGATCAGACGGTGATGGGGTCACGATTTATGATTCGAGCAATGTTTGGGTGGACCATT GTTCTTTGTCGAACTGTTTTGATGGGTTGATTGATGTTGTTCATGGATCAACGGCTATTACCATTTCGAACAATTACATG ACGCACCATAACAAGGTCATGCTCTTGGGTCATAGTGATTCCAATAAAGAGGATAAAAAGATGCAGGTTACGATTGCTTT CAACCATTTTGGAGAAGGACTTGGGGGAAGAATGCCCAGGTGCAGGTTCGGATATTTCCACGTGGTGAACAATGATTACA CACATTGGCAGAAGTACGCAATAGGTGGGAGTTCATCCCCAACTATTTTCAGCCAAGGCAACAGATTTCTTGCTCCAAAT GATGAAGAACACAAAGAGATCACCAAACATTTTGGATCATCGGAGAATGAATGGAAGAACTGGAACTGGAGGTCTGAAGG GGATTTAATGCTGAATGGCGCCTTCTTCAGTCCGTCCGGAGCCGGTGCAACTTCTACATATGCTAGGGCGTCAAGCATGG AAGCAAGACCACCAATGCTTGTGGCTTCAATGACAGCAGGGGCTGGAGCTCTTAGATGCAAGAAAGACTACATGTGCTAC TAG
Protein sequence (LotjaGi6g1v0096900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFPIILMFLLLTPTLIFSSPVQDPESVVQEVQKSIIEHRRKLGFYSCGTGNPIDDCWRCDPNWENNRKRLAECAIGFGR HAIGGRDGKFYLVTDPSDHAVNPKPGTLRHAAIQQEPLWIIFKHDMVIKLEMDLVMNSYKTIDGRGANVHIAGGPCIKVQ RKTNIIIHGISIHDCKRGGSGYVSDSPNHQSWRGRSDGDGVTIYDSSNVWVDHCSLSNCFDGLIDVVHGSTAITISNNYM THHNKVMLLGHSDSNKEDKKMQVTIAFNHFGEGLGGRMPRCRFGYFHVVNNDYTHWQKYAIGGSSSPTIFSQGNRFLAPN DEEHKEITKHFGSSENEWKNWNWRSEGDLMLNGAFFSPSGAGATSTYARASSMEARPPMLVASMTAGAGALRCKKDYMCY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 19 | 19 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 2 | 13 | 12 | - | – | |
| PANTHER | 2 | 399 | 398 | 1.4E-238 | – | |
| PANTHER | 2 | 399 | 398 | 1.4E-238 | – | |
| Phobius | 14 | 19 | 6 | - | – | |
| Phobius | 20 | 400 | 381 | - | – | |
| Gene3D | 51 | 392 | 342 | 4.7E-123 | ||
| SUPERFAMILY | 52 | 390 | 339 | 2.2E-99 | ||
| PRINTS | 74 | 91 | 18 | 2.4E-81 | ||
| PRINTS | 97 | 122 | 26 | 2.4E-81 | ||
| SMART | 125 | 322 | 198 | 3.1E-99 | ||
| PRINTS | 133 | 149 | 17 | 2.4E-81 | ||
| Pfam | 134 | 316 | 183 | 1.1E-25 | ||
| PRINTS | 197 | 218 | 22 | 2.4E-81 | ||
| PRINTS | 277 | 296 | 20 | 2.4E-81 | ||
| PRINTS | 299 | 318 | 20 | 2.4E-81 | ||
| PRINTS | 341 | 365 | 25 | 2.4E-81 | ||
| PRINTS | 370 | 393 | 24 | 2.4E-81 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0096900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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